RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 TMEM35BQ8NCS4 154 aa-0.04□□□□□ -2.42
SCN1A-206ENST00000491429 OR4S1Q8NGB4 309 aa-0.04□□□□□ -2.42
SCN1A-206ENST00000491429 C5orf42Q9H799 3197 aa-0.04□□□□□ -2.42
SCN1A-206ENST00000491429 TRPM7Q96QT4 1865 aa-0.04□□□□□ -2.42
SCN1A-206ENST00000491429 CSMD2Q7Z408 3487 aa-0.04□□□□□ -2.42
SCN1A-206ENST00000491429 NIPBLQ6KC79 2804 aaeCLIP-0.05□□□□□ -2.42
SCN1A-206ENST00000491429 TANC2Q9HCD6 1990 aa-0.05□□□□□ -2.42
SCN1A-206ENST00000491429 SRRM2Q9UQ35 2752 aaKnown RBP-0.05□□□□□ -2.42
SCN1A-206ENST00000491429 LAMA1P25391 3075 aa-0.05□□□□□ -2.42
SCN1A-206ENST00000491429 DNAH12Q6ZR08 3092 aa-0.05□□□□□ -2.42
SCN1A-206ENST00000491429 SDC4P31431 198 aa-0.05□□□□□ -2.42
SCN1A-206ENST00000491429 DSCR8Q96T75 97 aa-0.05□□□□□ -2.42
SCN1A-206ENST00000491429 WDFY3Q8IZQ1 3526 aa-0.05□□□□□ -2.42
SCN1A-206ENST00000491429 NF1P21359 2839 aa-0.05□□□□□ -2.42
SCN1A-206ENST00000491429 ZCCHC11Q5TAX3 1644 aaKnown RBP-0.05□□□□□ -2.42
SCN1A-206ENST00000491429 REV3LO60673 3130 aa-0.06□□□□□ -2.42
SCN1A-206ENST00000491429 TRBV10-1A0A0K0K1A3 114 aa-0.06□□□□□ -2.42
SCN1A-206ENST00000491429 PNMA8CA0A1B0GUJ8 204 aa-0.06□□□□□ -2.42
SCN1A-206ENST00000491429 C9JAW5 83 aa-0.06□□□□□ -2.42
SCN1A-206ENST00000491429 S100GP29377 79 aa-0.06□□□□□ -2.42
SCN1A-206ENST00000491429 PSPHP78330 225 aa-0.06□□□□□ -2.42
SCN1A-206ENST00000491429 Q5BKY6 102 aa-0.06□□□□□ -2.42
SCN1A-206ENST00000491429 TMEM141Q96I45 108 aa-0.06□□□□□ -2.42
SCN1A-206ENST00000491429 SMPXQ9UHP9 88 aa-0.06□□□□□ -2.42
SCN1A-206ENST00000491429 ASPMQ8IZT6 3477 aa-0.06□□□□□ -2.42
SCN1A-206ENST00000491429 BLMP54132 1417 aaPredicted RBP-0.06□□□□□ -2.42
SCN1A-206ENST00000491429 CADP27708 2225 aa-0.06□□□□□ -2.42
SCN1A-206ENST00000491429 UTRNP46939 3433 aa-0.06□□□□□ -2.42
SCN1A-206ENST00000491429 DYNC1H1Q14204 4646 aaKnown RBP-0.06□□□□□ -2.42
SCN1A-206ENST00000491429 FAT1Q14517 4588 aa-0.07□□□□□ -2.42
SCN1A-206ENST00000491429 PRKDCP78527 4128 aaKnown RBP-0.07□□□□□ -2.42
SCN1A-206ENST00000491429 RREB1Q92766 1687 aa-0.07□□□□□ -2.42
SCN1A-206ENST00000491429 CNOT1A5YKK6 2376 aaKnown RBP-0.07□□□□□ -2.42
SCN1A-206ENST00000491429 APOC1P02654 83 aa-0.07□□□□□ -2.42
SCN1A-206ENST00000491429 HSD17B12Q53GQ0 312 aa-0.07□□□□□ -2.42
SCN1A-206ENST00000491429 Q5XG85 94 aa-0.07□□□□□ -2.42
SCN1A-206ENST00000491429 TOMM20LQ6UXN7 152 aa-0.07□□□□□ -2.42
SCN1A-206ENST00000491429 CENPHQ9H3R5 247 aa-0.07□□□□□ -2.42
SCN1A-206ENST00000491429 PTPRGP23470 1445 aa-0.07□□□□□ -2.42
SCN1A-206ENST00000491429 ATG2AQ2TAZ0 1938 aa-0.07□□□□□ -2.42
SCN1A-206ENST00000491429 MED23Q9ULK4 1368 aa-0.07□□□□□ -2.42
SCN1A-206ENST00000491429 WNK1Q9H4A3 2382 aa-0.08□□□□□ -2.42
SCN1A-206ENST00000491429 HMGXB3Q12766 1538 aa-0.08□□□□□ -2.42
SCN1A-206ENST00000491429 FREM2Q5SZK8 3169 aa-0.08□□□□□ -2.42
SCN1A-206ENST00000491429 ALMS1Q8TCU4 4167 aa-0.08□□□□□ -2.42
SCN1A-206ENST00000491429 CSPG4Q6UVK1 2322 aa-0.08□□□□□ -2.42
SCN1A-206ENST00000491429 LRP5O75197 1615 aa-0.08□□□□□ -2.42
SCN1A-206ENST00000491429 CENPFP49454 3210 aa-0.08□□□□□ -2.42
SCN1A-206ENST00000491429 F2Z2F3 143 aa-0.08□□□□□ -2.42
SCN1A-206ENST00000491429 PGRMC1O00264 195 aaKnown RBP-0.08□□□□□ -2.42
SCN1A-206ENST00000491429 OR2H2O95918 312 aa-0.08□□□□□ -2.42
SCN1A-206ENST00000491429 HIST1H1BP16401 226 aaKnown RBP-0.08□□□□□ -2.42
SCN1A-206ENST00000491429 SPRR2DP22532 72 aa-0.08□□□□□ -2.42
SCN1A-206ENST00000491429 TFAMQ00059 246 aaKnown RBP-0.08□□□□□ -2.42
SCN1A-206ENST00000491429 LELP1Q5T871 98 aa-0.08□□□□□ -2.42
SCN1A-206ENST00000491429 PRR15LQ9BU68 103 aa-0.08□□□□□ -2.42
SCN1A-206ENST00000491429 COA4Q9NYJ1 87 aa-0.08□□□□□ -2.42
SCN1A-206ENST00000491429 CALML5Q9NZT1 146 aa-0.08□□□□□ -2.42
SCN1A-206ENST00000491429 METTL1Q9UBP6 276 aaKnown RBP-0.08□□□□□ -2.42
SCN1A-206ENST00000491429 CSMD3Q7Z407 3707 aa-0.08□□□□□ -2.42
SCN1A-206ENST00000491429 AFDNP55196 1824 aaKnown RBP-0.08□□□□□ -2.42
SCN1A-206ENST00000491429 LRBAP50851 2863 aa-0.08□□□□□ -2.42
SCN1A-206ENST00000491429 CHD9Q3L8U1 2897 aa-0.08□□□□□ -2.42
SCN1A-206ENST00000491429 DNAH14Q0VDD8 3507 aa-0.09□□□□□ -2.42
SCN1A-206ENST00000491429 APC2O95996 2303 aa-0.09□□□□□ -2.42
SCN1A-206ENST00000491429 ABCA4P78363 2273 aa-0.09□□□□□ -2.42
SCN1A-206ENST00000491429 TEX49A0A1B0GTD5 131 aa-0.09□□□□□ -2.42
SCN1A-206ENST00000491429 MT-ND4LP03901 98 aa-0.09□□□□□ -2.42
SCN1A-206ENST00000491429 PYYP10082 97 aa-0.09□□□□□ -2.42
SCN1A-206ENST00000491429 SPRR2EP22531 72 aa-0.09□□□□□ -2.42
SCN1A-206ENST00000491429 SPRR2BP35325 72 aa-0.09□□□□□ -2.42
SCN1A-206ENST00000491429 SPRR2AP35326 72 aa-0.09□□□□□ -2.42
SCN1A-206ENST00000491429 NDUFAF1Q9Y375 327 aa-0.09□□□□□ -2.42
SCN1A-206ENST00000491429 ADGRG4Q8IZF6 3080 aa-0.09□□□□□ -2.42
SCN1A-206ENST00000491429 MYO7AQ13402 2215 aa-0.09□□□□□ -2.42
SCN1A-206ENST00000491429 DMXL2Q8TDJ6 3036 aa-0.09□□□□□ -2.42
SCN1A-206ENST00000491429 PTPRZ1P23471 2315 aaPredicted RBP-0.09□□□□□ -2.42
SCN1A-206ENST00000491429 SPENQ96T58 3664 aaKnown RBP-0.09□□□□□ -2.42
SCN1A-206ENST00000491429 FLGP20930 4061 aaPredicted RBP-0.09□□□□□ -2.42
SCN1A-206ENST00000491429 LOC400499M0QZD8 3231 aa-0.09□□□□□ -2.42
SCN1A-206ENST00000491429 FER1L6Q2WGJ9 1857 aa-0.1□□□□□ -2.42
SCN1A-206ENST00000491429 OVOS2A0A0G2JMS6 1433 aa-0.1□□□□□ -2.43
SCN1A-206ENST00000491429 ZNF670-ZNF695F2Z2N8 137 aa-0.1□□□□□ -2.43
SCN1A-206ENST00000491429 J3KT08 172 aa-0.1□□□□□ -2.43
SCN1A-206ENST00000491429 DPM2O94777 84 aa-0.1□□□□□ -2.43
SCN1A-206ENST00000491429 PAEPP09466 180 aa-0.1□□□□□ -2.43
SCN1A-206ENST00000491429 AKR1D1P51857 326 aa-0.1□□□□□ -2.43
SCN1A-206ENST00000491429 ELOF1P60002 83 aaKnown RBP-0.1□□□□□ -2.43
SCN1A-206ENST00000491429 PLGLB1Q02325 96 aa-0.1□□□□□ -2.43
SCN1A-206ENST00000491429 SLC25A26Q70HW3 274 aa-0.1□□□□□ -2.43
SCN1A-206ENST00000491429 OR8I2Q8N0Y5 310 aa-0.1□□□□□ -2.43
SCN1A-206ENST00000491429 PPP1R1CQ8WVI7 109 aa-0.1□□□□□ -2.43
SCN1A-206ENST00000491429 PPDPFLQ8WWR9 84 aa-0.1□□□□□ -2.43
SCN1A-206ENST00000491429 SLC35B3Q9H1N7 401 aa-0.1□□□□□ -2.43
SCN1A-206ENST00000491429 BET1LQ9NYM9 111 aa-0.1□□□□□ -2.43
SCN1A-206ENST00000491429 DNAH1Q9P2D7 4330 aa-0.1□□□□□ -2.43
SCN1A-206ENST00000491429 COL14A1Q05707 1796 aaKnown RBP-0.1□□□□□ -2.43
SCN1A-206ENST00000491429 SPTBN5Q9NRC6 3674 aaKnown RBP-0.1□□□□□ -2.43
SCN1A-206ENST00000491429 VPS13BQ7Z7G8 4022 aa-0.1□□□□□ -2.43
SCN1A-206ENST00000491429 CRYBG3Q68DQ2 2970 aa-0.1□□□□□ -2.43
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms