RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 PIPP12273 146 aaPredicted RBP3.91□□□□□ -1.78
VPS41-209ENST00000457055 SMIM11AP58511 58 aa3.91□□□□□ -1.78
VPS41-209ENST00000457055 FGF12P61328 243 aa3.91□□□□□ -1.78
VPS41-209ENST00000457055 HIST1H4AP62805 103 aaKnown RBP3.91□□□□□ -1.78
VPS41-209ENST00000457055 TMEM170BQ5T4T1 132 aa3.91□□□□□ -1.78
VPS41-209ENST00000457055 FAM72AQ5TYM5 149 aa3.91□□□□□ -1.78
VPS41-209ENST00000457055 NOXRED1Q6NXP6 359 aa3.91□□□□□ -1.78
VPS41-209ENST00000457055 C2orf91Q6ZV80 131 aa3.91□□□□□ -1.78
VPS41-209ENST00000457055 TMEM252Q8N6L7 170 aa3.91□□□□□ -1.78
VPS41-209ENST00000457055 FAM216BQ8N7L0 139 aa3.91□□□□□ -1.78
VPS41-209ENST00000457055 DAND5Q8N907 189 aa3.91□□□□□ -1.78
VPS41-209ENST00000457055 LINC01600Q96MT4 127 aa3.91□□□□□ -1.78
VPS41-209ENST00000457055 CXCL16Q9H2A7 254 aa3.91□□□□□ -1.78
VPS41-209ENST00000457055 ARL2-SNX15V9GYD0 113 aa3.91□□□□□ -1.78
VPS41-209ENST00000457055 DNHD1Q96M86 4753 aa3.91□□□□□ -1.78
VPS41-209ENST00000457055 KIF26BQ2KJY2 2108 aa3.91□□□□□ -1.78
VPS41-209ENST00000457055 FER1L5A0AVI2 2057 aa3.9□□□□□ -1.78
VPS41-209ENST00000457055 IGHV7-81A0A0B4J1V7 117 aa3.9□□□□□ -1.79
VPS41-209ENST00000457055 J3QLW9 94 aa3.9□□□□□ -1.79
VPS41-209ENST00000457055 NDUFC1O43677 76 aa3.9□□□□□ -1.79
VPS41-209ENST00000457055 CCKP06307 115 aa3.9□□□□□ -1.79
VPS41-209ENST00000457055 CD28P10747 220 aa3.9□□□□□ -1.79
VPS41-209ENST00000457055 BSPH1Q075Z2 132 aa3.9□□□□□ -1.79
VPS41-209ENST00000457055 RSPO1Q2MKA7 263 aaPredicted RBP3.9□□□□□ -1.79
VPS41-209ENST00000457055 CHCHD2P9Q5T1J5 151 aaPredicted RBP3.9□□□□□ -1.79
VPS41-209ENST00000457055 ADAMTSL4-AS1Q5T5F5 129 aa3.9□□□□□ -1.79
VPS41-209ENST00000457055 C6orf201Q7Z4U5 140 aa3.9□□□□□ -1.79
VPS41-209ENST00000457055 PDPNQ86YL7 162 aa3.9□□□□□ -1.79
VPS41-209ENST00000457055 MED12LQ86YW9 2145 aa3.9□□□□□ -1.79
VPS41-209ENST00000457055 CLDND2Q8NHS1 167 aa3.9□□□□□ -1.79
VPS41-209ENST00000457055 FLVCR1-AS1Q8TAF5 88 aa3.9□□□□□ -1.79
VPS41-209ENST00000457055 ITLN1Q8WWA0 313 aa3.9□□□□□ -1.79
VPS41-209ENST00000457055 ITLN2Q8WWU7 325 aaPredicted RBP3.9□□□□□ -1.79
VPS41-209ENST00000457055 RNASE6Q93091 150 aaKnown RBP3.9□□□□□ -1.79
VPS41-209ENST00000457055 CCL28Q9NRJ3 127 aa3.9□□□□□ -1.79
VPS41-209ENST00000457055 HIGD1BQ9P298 99 aa3.9□□□□□ -1.79
VPS41-209ENST00000457055 SPENQ96T58 3664 aaKnown RBP3.9□□□□□ -1.79
VPS41-209ENST00000457055 EXPH5Q8NEV8 1989 aa3.9□□□□□ -1.79
VPS41-209ENST00000457055 SPG11Q96JI7 2443 aa3.89□□□□□ -1.79
VPS41-209ENST00000457055 NF1P21359 2839 aa3.89□□□□□ -1.79
VPS41-209ENST00000457055 IGHV3-38A0A0C4DH36 116 aa3.89□□□□□ -1.79
VPS41-209ENST00000457055 CRYM-AS1A6NIL9 109 aa3.89□□□□□ -1.79
VPS41-209ENST00000457055 K7EQG2 157 aa3.89□□□□□ -1.79
VPS41-209ENST00000457055 TSHBP01222 138 aa3.89□□□□□ -1.79
VPS41-209ENST00000457055 IGKV3-20P01619 116 aa3.89□□□□□ -1.79
VPS41-209ENST00000457055 APCSP02743 223 aa3.89□□□□□ -1.79
VPS41-209ENST00000457055 SAA1P0DJI8 122 aaPredicted RBP3.89□□□□□ -1.79
VPS41-209ENST00000457055 RNASE2P10153 161 aaKnown RBP3.89□□□□□ -1.79
VPS41-209ENST00000457055 CCL4P13236 92 aa3.89□□□□□ -1.79
VPS41-209ENST00000457055 ZNF32P17041 273 aa3.89□□□□□ -1.79
VPS41-209ENST00000457055 GNB1P62873 340 aa3.89□□□□□ -1.79
VPS41-209ENST00000457055 RBM3P98179 157 aaKnown RBP3.89□□□□□ -1.79
VPS41-209ENST00000457055 RPL18Q07020 188 aaKnown RBP3.89□□□□□ -1.79
VPS41-209ENST00000457055 C17orf58Q2M2W7 97 aa3.89□□□□□ -1.79
VPS41-209ENST00000457055 FAM104BQ5XKR9 115 aa3.89□□□□□ -1.79
VPS41-209ENST00000457055 ZFP2Q6ZN57 461 aa3.89□□□□□ -1.79
VPS41-209ENST00000457055 LINC00643Q86TS7 51 aa3.89□□□□□ -1.79
VPS41-209ENST00000457055 URB1-AS1Q96HZ7 61 aa3.89□□□□□ -1.79
VPS41-209ENST00000457055 FAM103A1Q9BTL3 118 aaKnown RBP3.89□□□□□ -1.79
VPS41-209ENST00000457055 CLEC7AQ9BXN2 247 aa3.89□□□□□ -1.79
VPS41-209ENST00000457055 GABARAPL1Q9H0R8 117 aa3.89□□□□□ -1.79
VPS41-209ENST00000457055 SNRNP200O75643 2136 aaKnown RBP3.89□□□□□ -1.79
VPS41-209ENST00000457055 ANKRD12Q6UB98 2062 aa3.88□□□□□ -1.79
VPS41-209ENST00000457055 A0A1B0GVT2 93 aa3.88□□□□□ -1.79
VPS41-209ENST00000457055 IBA57-AS1B1ANH7 110 aa3.88□□□□□ -1.79
VPS41-209ENST00000457055 FXYD1O00168 92 aa3.88□□□□□ -1.79
VPS41-209ENST00000457055 BMPR1BO00238 502 aa3.88□□□□□ -1.79
VPS41-209ENST00000457055 IGHV3-48P01763 117 aa3.88□□□□□ -1.79
VPS41-209ENST00000457055 BGLAPP02818 100 aa3.88□□□□□ -1.79
VPS41-209ENST00000457055 MDKP21741 143 aaPredicted RBP3.88□□□□□ -1.79
VPS41-209ENST00000457055 COX7A1P24310 79 aa3.88□□□□□ -1.79
VPS41-209ENST00000457055 RPL36AP83881 106 aaKnown RBP3.88□□□□□ -1.79
VPS41-209ENST00000457055 SOSTDC1Q6X4U4 206 aa3.88□□□□□ -1.79
VPS41-209ENST00000457055 MIR17HGQ75NE6 70 aa3.88□□□□□ -1.79
VPS41-209ENST00000457055 NUP37Q8NFH4 326 aa3.88□□□□□ -1.79
VPS41-209ENST00000457055 SMIM4Q8WVI0 70 aa3.88□□□□□ -1.79
VPS41-209ENST00000457055 DPM3Q9P2X0 92 aa3.88□□□□□ -1.79
VPS41-209ENST00000457055 HILPDAQ9Y5L2 63 aa3.88□□□□□ -1.79
VPS41-209ENST00000457055 CELSR1Q9NYQ6 3014 aa3.88□□□□□ -1.79
VPS41-209ENST00000457055 TDRD6O60522 2096 aaKnown RBP3.88□□□□□ -1.79
VPS41-209ENST00000457055 BSNQ9UPA5 3926 aa3.87□□□□□ -1.79
VPS41-209ENST00000457055 IGLV5-52A0A0A0MRZ9 124 aa3.87□□□□□ -1.79
VPS41-209ENST00000457055 IGKV6D-21A0A0A0MT36 114 aa3.87□□□□□ -1.79
VPS41-209ENST00000457055 IGHV1-24A0A0C4DH33 117 aa3.87□□□□□ -1.79
VPS41-209ENST00000457055 IGKV1-12A0A0C4DH73 117 aa3.87□□□□□ -1.79
VPS41-209ENST00000457055 A0A1W2PQD3 144 aa3.87□□□□□ -1.79
VPS41-209ENST00000457055 LEPROTO15243 131 aa3.87□□□□□ -1.79
VPS41-209ENST00000457055 GAS8-AS1O95177 125 aa3.87□□□□□ -1.79
VPS41-209ENST00000457055 IGKV1D-12P01611 117 aa3.87□□□□□ -1.79
VPS41-209ENST00000457055 IGKV1-16P04430 117 aa3.87□□□□□ -1.79
VPS41-209ENST00000457055 ZNF56Q15929 161 aa3.87□□□□□ -1.79
VPS41-209ENST00000457055 KRTAP21-3Q3LHN1 58 aa3.87□□□□□ -1.79
VPS41-209ENST00000457055 CLEC2BQ92478 149 aa3.87□□□□□ -1.79
VPS41-209ENST00000457055 SND1-IT1Q9HBX3 110 aa3.87□□□□□ -1.79
VPS41-209ENST00000457055 CSAG2Q9Y5P2 127 aa3.87□□□□□ -1.79
VPS41-209ENST00000457055 CSMD1Q96PZ7 3565 aa3.87□□□□□ -1.79
VPS41-209ENST00000457055 HIVEP1P15822 2718 aa3.87□□□□□ -1.79
VPS41-209ENST00000457055 TRPM6Q9BX84 2022 aa3.87□□□□□ -1.79
VPS41-209ENST00000457055 ADGRG4Q8IZF6 3080 aa3.86□□□□□ -1.79
VPS41-209ENST00000457055 IGLV5-37A0A075B6J1 123 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 86.5 ms