RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 A0A0G2JLM5 398 aa7.13□□□□□ -1.27
CUX1-206ENST00000437600 ZNF688P0C7X2 276 aa7.13□□□□□ -1.27
CUX1-206ENST00000437600 COX8AP10176 69 aa7.13□□□□□ -1.27
CUX1-206ENST00000437600 DEFB136Q30KP8 78 aa7.13□□□□□ -1.27
CUX1-206ENST00000437600 C9orf47Q6ZRZ4 202 aa7.13□□□□□ -1.27
CUX1-206ENST00000437600 ZFAND2AQ8N6M9 145 aa7.13□□□□□ -1.27
CUX1-206ENST00000437600 RPL39LQ96EH5 51 aaKnown RBP7.13□□□□□ -1.27
CUX1-206ENST00000437600 MS4A6AQ9H2W1 248 aa7.13□□□□□ -1.27
CUX1-206ENST00000437600 VPREB3Q9UKI3 123 aa7.13□□□□□ -1.27
CUX1-206ENST00000437600 C18orf65Q6ZTR6 163 aa7.13□□□□□ -1.27
CUX1-206ENST00000437600 OR10J6PQ8NGY7 276 aa7.13□□□□□ -1.27
CUX1-206ENST00000437600 MRAP2Q96G30 205 aa7.13□□□□□ -1.27
CUX1-206ENST00000437600 MAP1LC3AQ9H492 121 aa7.13□□□□□ -1.27
CUX1-206ENST00000437600 A6NDN8 102 aa7.12□□□□□ -1.27
CUX1-206ENST00000437600 J3QLI3 93 aa7.12□□□□□ -1.27
CUX1-206ENST00000437600 NDUFA4O00483 81 aa7.12□□□□□ -1.27
CUX1-206ENST00000437600 IGLV1-40P01703 118 aa7.12□□□□□ -1.27
CUX1-206ENST00000437600 MGPP08493 103 aa7.12□□□□□ -1.27
CUX1-206ENST00000437600 KHDC1LQ5JSQ8 128 aa7.12□□□□□ -1.27
CUX1-206ENST00000437600 GATD1Q8NB37 220 aa7.12□□□□□ -1.27
CUX1-206ENST00000437600 IGKV2D-26A0A0A0MRZ7 120 aa7.12□□□□□ -1.27
CUX1-206ENST00000437600 TRAV12-3A0A0B4J271 114 aa7.12□□□□□ -1.27
CUX1-206ENST00000437600 CRIP2P52943 208 aaPredicted RBP7.12□□□□□ -1.27
CUX1-206ENST00000437600 SYNJ2BPP57105 145 aa7.12□□□□□ -1.27
CUX1-206ENST00000437600 MTURNQ8N3F0 131 aa7.12□□□□□ -1.27
CUX1-206ENST00000437600 SPCS1Q9Y6A9 102 aa7.12□□□□□ -1.27
CUX1-206ENST00000437600 TRRAPQ9Y4A5 3859 aa7.12□□□□□ -1.27
CUX1-206ENST00000437600 TRAV25A0A0B4J276 109 aa7.11□□□□□ -1.27
CUX1-206ENST00000437600 H3BRM9 83 aa7.11□□□□□ -1.27
CUX1-206ENST00000437600 LY6G6DO95868 133 aa7.11□□□□□ -1.27
CUX1-206ENST00000437600 Q6YL49 198 aa7.11□□□□□ -1.27
CUX1-206ENST00000437600 GTSCR1Q86UQ5 136 aa7.11□□□□□ -1.27
CUX1-206ENST00000437600 TMEM160Q9NX00 188 aa7.11□□□□□ -1.27
CUX1-206ENST00000437600 RBAKDNA6NC62 111 aa7.11□□□□□ -1.27
CUX1-206ENST00000437600 CFHR3Q02985 330 aa7.11□□□□□ -1.27
CUX1-206ENST00000437600 PHLDA3Q9Y5J5 127 aa7.11□□□□□ -1.27
CUX1-206ENST00000437600 A0A087WWL8 130 aa7.11□□□□□ -1.27
CUX1-206ENST00000437600 SOCS3O14543 225 aa7.11□□□□□ -1.27
CUX1-206ENST00000437600 SMIM17P0DL12 118 aa7.11□□□□□ -1.27
CUX1-206ENST00000437600 PSMB8P28062 276 aa7.11□□□□□ -1.27
CUX1-206ENST00000437600 PSMG4Q5JS54 123 aa7.11□□□□□ -1.27
CUX1-206ENST00000437600 USMG5Q96IX5 58 aa7.11□□□□□ -1.27
CUX1-206ENST00000437600 DAZ1Q9NQZ3 744 aaKnown RBP7.11□□□□□ -1.27
CUX1-206ENST00000437600 TEX48A0A1B0GUV7 120 aa7.1□□□□□ -1.27
CUX1-206ENST00000437600 FSHBP01225 129 aa7.1□□□□□ -1.27
CUX1-206ENST00000437600 KLK9Q2XQG4 91 aa7.1□□□□□ -1.27
CUX1-206ENST00000437600 TMEM190Q8WZ59 177 aa7.1□□□□□ -1.27
CUX1-206ENST00000437600 ZNF702PQ9H963 129 aa7.1□□□□□ -1.27
CUX1-206ENST00000437600 KLK9Q9UKQ9 250 aa7.1□□□□□ -1.27
CUX1-206ENST00000437600 C9orf139Q6ZV77 190 aa7.1□□□□□ -1.27
CUX1-206ENST00000437600 CNFNQ9BYD5 112 aa7.1□□□□□ -1.27
CUX1-206ENST00000437600 FBN1P35555 2871 aaKnown RBP7.1□□□□□ -1.27
CUX1-206ENST00000437600 INAFM1C9JVW0 142 aa7.09□□□□□ -1.27
CUX1-206ENST00000437600 ZC2HC1BQ5TFG8 222 aa7.09□□□□□ -1.27
CUX1-206ENST00000437600 FAM74A4Q5TZK3 123 aa7.09□□□□□ -1.27
CUX1-206ENST00000437600 NRACQ8N912 160 aa7.09□□□□□ -1.27
CUX1-206ENST00000437600 LINC00477Q96M19 166 aa7.09□□□□□ -1.27
CUX1-206ENST00000437600 A0A1W2PPM0 123 aa7.09□□□□□ -1.27
CUX1-206ENST00000437600 EMP1P54849 157 aa7.09□□□□□ -1.27
CUX1-206ENST00000437600 STAB1Q9NY15 2570 aa7.09□□□□□ -1.28
CUX1-206ENST00000437600 OR5A1Q8NGJ0 315 aa7.09□□□□□ -1.28
CUX1-206ENST00000437600 ESM1Q9NQ30 184 aa7.09□□□□□ -1.28
CUX1-206ENST00000437600 IGHV4OR15-8A0A075B7B6 117 aa7.08□□□□□ -1.28
CUX1-206ENST00000437600 A0A087WW49 117 aa7.08□□□□□ -1.28
CUX1-206ENST00000437600 F5H697 171 aa7.08□□□□□ -1.28
CUX1-206ENST00000437600 CD7P09564 240 aa7.08□□□□□ -1.28
CUX1-206ENST00000437600 FGF6P10767 208 aa7.08□□□□□ -1.28
CUX1-206ENST00000437600 FABP2P12104 132 aa7.08□□□□□ -1.28
CUX1-206ENST00000437600 RNASE3P12724 160 aaKnown RBP7.08□□□□□ -1.28
CUX1-206ENST00000437600 FCER1GP30273 86 aa7.08□□□□□ -1.28
CUX1-206ENST00000437600 SPINK13Q1W4C9 94 aa7.08□□□□□ -1.28
CUX1-206ENST00000437600 MRPL35Q9NZE8 188 aaKnown RBP7.08□□□□□ -1.28
CUX1-206ENST00000437600 IGLV2-18A0A075B6J9 118 aa7.08□□□□□ -1.28
CUX1-206ENST00000437600 TRAV21A0A0B4J279 112 aa7.08□□□□□ -1.28
CUX1-206ENST00000437600 MDFICQ9P1T7 246 aa7.08□□□□□ -1.28
CUX1-206ENST00000437600 HHLA3Q9XRX5 114 aa7.08□□□□□ -1.28
CUX1-206ENST00000437600 TSSC4Q9Y5U2 329 aaPredicted RBP7.08□□□□□ -1.28
CUX1-206ENST00000437600 NBEAL2Q6ZNJ1 2754 aa7.08□□□□□ -1.28
CUX1-206ENST00000437600 HSD52Q0P140 79 aa7.07□□□□□ -1.28
CUX1-206ENST00000437600 C5orf47Q569G3 176 aa7.07□□□□□ -1.28
CUX1-206ENST00000437600 DCANP1Q8TF63 244 aa7.07□□□□□ -1.28
CUX1-206ENST00000437600 RASL10AQ92737 203 aa7.07□□□□□ -1.28
CUX1-206ENST00000437600 H3BUA1 57 aa7.07□□□□□ -1.28
CUX1-206ENST00000437600 ASIPP42127 132 aa7.07□□□□□ -1.28
CUX1-206ENST00000437600 LGALS9BQ3B8N2 356 aa7.07□□□□□ -1.28
CUX1-206ENST00000437600 LGALS9CQ6DKI2 356 aa7.07□□□□□ -1.28
CUX1-206ENST00000437600 NXT2Q9NPJ8 142 aaKnown RBP7.07□□□□□ -1.28
CUX1-206ENST00000437600 A0A1W2PRX2 142 aa7.06□□□□□ -1.28
CUX1-206ENST00000437600 LAGE3Q14657 143 aa7.06□□□□□ -1.28
CUX1-206ENST00000437600 Q8N8P6 123 aa7.06□□□□□ -1.28
CUX1-206ENST00000437600 OVOL1O14753 267 aa7.06□□□□□ -1.28
CUX1-206ENST00000437600 SLURP1P55000 103 aa7.06□□□□□ -1.28
CUX1-206ENST00000437600 SAMD5Q5TGI4 173 aa7.06□□□□□ -1.28
CUX1-206ENST00000437600 FAM159AQ6UWV7 190 aa7.06□□□□□ -1.28
CUX1-206ENST00000437600 COL6A5A8TX70 2615 aa7.06□□□□□ -1.28
CUX1-206ENST00000437600 IGHV3-73A0A0B4J1V6 119 aa7.06□□□□□ -1.28
CUX1-206ENST00000437600 HOXD3P31249 432 aaPredicted RBP7.06□□□□□ -1.28
CUX1-206ENST00000437600 MYOZ3Q8TDC0 251 aa7.06□□□□□ -1.28
CUX1-206ENST00000437600 GAGE12HA6NDE8 117 aa7.05□□□□□ -1.28
CUX1-206ENST00000437600 DNAJC9-AS1A6NH13 148 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms