RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 RPL39LQ96EH5 51 aaKnown RBP19.35■□□□□ 0.69
LDB1-202ENST00000425280 ZNF747Q9BV97 191 aa19.34■□□□□ 0.69
LDB1-202ENST00000425280 SYS1-DBNDD2H3BUS1 97 aa19.34■□□□□ 0.69
LDB1-202ENST00000425280 HBDP02042 147 aa19.34■□□□□ 0.69
LDB1-202ENST00000425280 ZNF876PQ49A33 203 aa19.34■□□□□ 0.69
LDB1-202ENST00000425280 SPATA3Q8NHX4 192 aa19.34■□□□□ 0.69
LDB1-202ENST00000425280 TSTD3H0UI37 97 aa19.33■□□□□ 0.69
LDB1-202ENST00000425280 LINC00587B1AMM8 73 aa19.32■□□□□ 0.68
LDB1-202ENST00000425280 NUTF2P61970 127 aaKnown RBP19.32■□□□□ 0.68
LDB1-202ENST00000425280 MAP1LC3CQ9BXW4 147 aa19.32■□□□□ 0.68
LDB1-202ENST00000425280 CRYGDP07320 174 aa19.31■□□□□ 0.68
LDB1-202ENST00000425280 C1orf158Q8N1D5 194 aa19.31■□□□□ 0.68
LDB1-202ENST00000425280 C20orf78Q9BR46 151 aa19.31■□□□□ 0.68
LDB1-202ENST00000425280 SUMO2P61956 95 aaKnown RBP19.31■□□□□ 0.68
LDB1-202ENST00000425280 ZNF415Q09FC8 603 aa19.31■□□□□ 0.68
LDB1-202ENST00000425280 SUMO4Q6EEV6 95 aa19.31■□□□□ 0.68
LDB1-202ENST00000425280 SMIM2Q9BVW6 85 aa19.31■□□□□ 0.68
LDB1-202ENST00000425280 FAM74A4Q5TZK3 123 aa19.3■□□□□ 0.68
LDB1-202ENST00000425280 VAMP8Q9BV40 100 aa19.3■□□□□ 0.68
LDB1-202ENST00000425280 C11orf72Q8NBR9 251 aa19.29■□□□□ 0.68
LDB1-202ENST00000425280 FCER1GP30273 86 aa19.29■□□□□ 0.68
LDB1-202ENST00000425280 TENM1Q9UKZ4 2725 aa19.28■□□□□ 0.68
LDB1-202ENST00000425280 KIR2DL5BA0A0G2JN68 375 aa19.28■□□□□ 0.68
LDB1-202ENST00000425280 KIR2DL5BA0A0G2JPC4 375 aa19.28■□□□□ 0.68
LDB1-202ENST00000425280 F5H697 171 aa19.28■□□□□ 0.68
LDB1-202ENST00000425280 PPP1R17O96001 155 aa19.28■□□□□ 0.68
LDB1-202ENST00000425280 KIR2DL5AQ8N109 375 aa19.28■□□□□ 0.68
LDB1-202ENST00000425280 TMEM208Q9BTX3 173 aa19.28■□□□□ 0.68
LDB1-202ENST00000425280 PAM16Q9Y3D7 125 aa19.28■□□□□ 0.68
LDB1-202ENST00000425280 CYSRT1A8MQ03 144 aa19.28■□□□□ 0.68
LDB1-202ENST00000425280 GIG44P09565 113 aaPredicted RBP19.28■□□□□ 0.68
LDB1-202ENST00000425280 INSL3P51460 131 aa19.28■□□□□ 0.68
LDB1-202ENST00000425280 PET117Q6UWS5 81 aa19.28■□□□□ 0.68
LDB1-202ENST00000425280 ATOH7Q8N100 152 aa19.28■□□□□ 0.68
LDB1-202ENST00000425280 JMJD1CQ15652 2540 aa19.27■□□□□ 0.68
LDB1-202ENST00000425280 M0R2P5 195 aa19.27■□□□□ 0.68
LDB1-202ENST00000425280 TCAPO15273 167 aa19.27■□□□□ 0.68
LDB1-202ENST00000425280 RPL35AP18077 110 aaKnown RBP19.26■□□□□ 0.67
LDB1-202ENST00000425280 LAGE3Q14657 143 aa19.26■□□□□ 0.67
LDB1-202ENST00000425280 C9orf66Q5T8R8 295 aa19.26■□□□□ 0.67
LDB1-202ENST00000425280 IGHV3OR16-12A0A075B7B8 117 aa19.26■□□□□ 0.67
LDB1-202ENST00000425280 TMEM158Q8WZ71 300 aa19.26■□□□□ 0.67
LDB1-202ENST00000425280 H0Y8G0 127 aa19.25■□□□□ 0.67
LDB1-202ENST00000425280 AZU1P20160 251 aa19.25■□□□□ 0.67
LDB1-202ENST00000425280 PTH2Q96A98 100 aa19.25■□□□□ 0.67
LDB1-202ENST00000425280 BAHCC1Q9P281 2608 aa19.25■□□□□ 0.67
LDB1-202ENST00000425280 ZNF56Q15929 161 aa19.24■□□□□ 0.67
LDB1-202ENST00000425280 C20orf202A1L168 122 aa19.24■□□□□ 0.67
LDB1-202ENST00000425280 MCRIP2Q9BUT9 160 aaKnown RBP19.24■□□□□ 0.67
LDB1-202ENST00000425280 PIK3CD-AS1Q5SR53 167 aa19.23■□□□□ 0.67
LDB1-202ENST00000425280 SPXQ9BT56 116 aa19.23■□□□□ 0.67
LDB1-202ENST00000425280 DDTP30046 118 aa19.23■□□□□ 0.67
LDB1-202ENST00000425280 LINC01545Q5VT33 79 aa19.22■□□□□ 0.67
LDB1-202ENST00000425280 IFI27L1Q96BM0 104 aa19.22■□□□□ 0.67
LDB1-202ENST00000425280 TEP1Q99973 2627 aaKnown RBP19.22■□□□□ 0.67
LDB1-202ENST00000425280 CSTL1Q9H114 145 aa19.22■□□□□ 0.67
LDB1-202ENST00000425280 ST20Q9HBF5 79 aa19.22■□□□□ 0.67
LDB1-202ENST00000425280 ATRQ13535 2644 aa19.21■□□□□ 0.67
LDB1-202ENST00000425280 M0QY20 66 aa19.21■□□□□ 0.67
LDB1-202ENST00000425280 VWFP04275 2813 aa19.21■□□□□ 0.67
LDB1-202ENST00000425280 MAJINQ3KP22 176 aa19.21■□□□□ 0.67
LDB1-202ENST00000425280 RPL32P62910 135 aaKnown RBP19.2■□□□□ 0.66
LDB1-202ENST00000425280 SPATA45Q537H7 98 aa19.2■□□□□ 0.66
LDB1-202ENST00000425280 MORN3Q6PF18 240 aaPredicted RBP19.2■□□□□ 0.66
LDB1-202ENST00000425280 C18orf15Q96N68 181 aa19.2■□□□□ 0.66
LDB1-202ENST00000425280 A8MWV9 139 aa19.19■□□□□ 0.66
LDB1-202ENST00000425280 TRAV9-2A0A087WT02 112 aa19.18■□□□□ 0.66
LDB1-202ENST00000425280 POLR2KP53803 58 aaKnown RBP19.18■□□□□ 0.66
LDB1-202ENST00000425280 CTAG1AP78358 180 aa19.18■□□□□ 0.66
LDB1-202ENST00000425280 UFSP1Q6NVU6 142 aa19.18■□□□□ 0.66
LDB1-202ENST00000425280 GTSCR1Q86UQ5 136 aa19.18■□□□□ 0.66
LDB1-202ENST00000425280 IL17DQ8TAD2 202 aa19.18■□□□□ 0.66
LDB1-202ENST00000425280 RNASE8Q8TDE3 154 aaKnown RBP19.18■□□□□ 0.66
LDB1-202ENST00000425280 PMCHL2Q9BQD1 86 aa19.18■□□□□ 0.66
LDB1-202ENST00000425280 MRPL16Q9NX20 251 aaKnown RBP19.18■□□□□ 0.66
LDB1-202ENST00000425280 GOLT1BQ9Y3E0 138 aa19.18■□□□□ 0.66
LDB1-202ENST00000425280 TRBV6-5A0A0K0K1A5 114 aa19.18■□□□□ 0.66
LDB1-202ENST00000425280 K7EMI3 77 aa19.18■□□□□ 0.66
LDB1-202ENST00000425280 KRTAP24-1Q3LI83 254 aa19.18■□□□□ 0.66
LDB1-202ENST00000425280 ORMDL2Q53FV1 153 aa19.18■□□□□ 0.66
LDB1-202ENST00000425280 NEGR1Q7Z3B1 354 aa19.18■□□□□ 0.66
LDB1-202ENST00000425280 C1QTNF4Q9BXJ3 329 aa19.18■□□□□ 0.66
LDB1-202ENST00000425280 NUDT3O95989 172 aa19.17■□□□□ 0.66
LDB1-202ENST00000425280 ZNF705AQ6ZN79 300 aaPredicted RBP19.17■□□□□ 0.66
LDB1-202ENST00000425280 CSNK1G2-AS1Q8NCQ2 148 aa19.17■□□□□ 0.66
LDB1-202ENST00000425280 IGHV3-73A0A0B4J1V6 119 aa19.16■□□□□ 0.66
LDB1-202ENST00000425280 CFAP126Q5VTH2 177 aa19.16■□□□□ 0.66
LDB1-202ENST00000425280 TMEM263Q8WUH6 116 aaKnown RBP19.15■□□□□ 0.66
LDB1-202ENST00000425280 SDHAF1A6NFY7 115 aa19.15■□□□□ 0.66
LDB1-202ENST00000425280 NACAE9PAV3 2078 aa19.15■□□□□ 0.66
LDB1-202ENST00000425280 WFDC9Q8NEX5 89 aa19.14■□□□□ 0.65
LDB1-202ENST00000425280 VCYO14598 125 aa19.13■□□□□ 0.65
LDB1-202ENST00000425280 LGALS9BQ3B8N2 356 aa19.13■□□□□ 0.65
LDB1-202ENST00000425280 LGALS9CQ6DKI2 356 aa19.13■□□□□ 0.65
LDB1-202ENST00000425280 EDA2RQ9HAV5 297 aa19.13■□□□□ 0.65
LDB1-202ENST00000425280 NOTCH3Q9UM47 2321 aa19.13■□□□□ 0.65
LDB1-202ENST00000425280 TRBV27A0A0K0K1C4 114 aa19.12■□□□□ 0.65
LDB1-202ENST00000425280 RS1O15537 224 aa19.12■□□□□ 0.65
LDB1-202ENST00000425280 IGLL1P15814 213 aa19.12■□□□□ 0.65
LDB1-202ENST00000425280 NDUFAF3Q9BU61 184 aa19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 134.3 ms