RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 SAMD13Q5VXD3 122 aa14.42□□□□□ -0.1
COL9A3-201ENST00000343916 C20orf78Q9BR46 151 aa14.42□□□□□ -0.1
COL9A3-201ENST00000343916 SONP18583 2426 aaKnown RBP14.42□□□□□ -0.1
COL9A3-201ENST00000343916 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP14.41□□□□□ -0.1
COL9A3-201ENST00000343916 LINC00315P59091 139 aa14.41□□□□□ -0.1
COL9A3-201ENST00000343916 SPINK13Q1W4C9 94 aa14.41□□□□□ -0.1
COL9A3-201ENST00000343916 Q96MF0 132 aa14.41□□□□□ -0.1
COL9A3-201ENST00000343916 KIF25-AS1Q9Y6Z4 181 aa14.41□□□□□ -0.1
COL9A3-201ENST00000343916 NXPH4O95158 308 aa14.41□□□□□ -0.1
COL9A3-201ENST00000343916 HIST2H2BDQ6DRA6 164 aa14.41□□□□□ -0.1
COL9A3-201ENST00000343916 UBE2E2Q96LR5 201 aa14.41□□□□□ -0.1
COL9A3-201ENST00000343916 APCP25054 2843 aa14.41□□□□□ -0.1
COL9A3-201ENST00000343916 K7ERJ3 54 aa14.4□□□□□ -0.1
COL9A3-201ENST00000343916 ORMDL2Q53FV1 153 aa14.4□□□□□ -0.1
COL9A3-201ENST00000343916 MDFICQ9P1T7 246 aa14.4□□□□□ -0.1
COL9A3-201ENST00000343916 PRRC2AP48634 2157 aaKnown RBP14.4□□□□□ -0.1
COL9A3-201ENST00000343916 A0A087WX48 190 aa14.4□□□□□ -0.1
COL9A3-201ENST00000343916 K7EMI3 77 aa14.4□□□□□ -0.1
COL9A3-201ENST00000343916 SCGB3A1Q96QR1 104 aa14.4□□□□□ -0.1
COL9A3-201ENST00000343916 SMIM13P0DJ93 91 aa14.39□□□□□ -0.11
COL9A3-201ENST00000343916 TOMM6Q96B49 74 aa14.39□□□□□ -0.11
COL9A3-201ENST00000343916 CHAC1Q9BUX1 264 aa14.39□□□□□ -0.11
COL9A3-201ENST00000343916 G3V4G9 280 aa14.39□□□□□ -0.11
COL9A3-201ENST00000343916 SLURP1P55000 103 aa14.39□□□□□ -0.11
COL9A3-201ENST00000343916 SAMD5Q5TGI4 173 aa14.39□□□□□ -0.11
COL9A3-201ENST00000343916 LGALS9O00182 355 aa14.38□□□□□ -0.11
COL9A3-201ENST00000343916 FABP2P12104 132 aa14.38□□□□□ -0.11
COL9A3-201ENST00000343916 FAM74A4Q5TZK3 123 aa14.38□□□□□ -0.11
COL9A3-201ENST00000343916 C2orf66Q6UXQ4 117 aa14.38□□□□□ -0.11
COL9A3-201ENST00000343916 Q8N1Y9 231 aa14.38□□□□□ -0.11
COL9A3-201ENST00000343916 DUX3Q96PT4 197 aa14.38□□□□□ -0.11
COL9A3-201ENST00000343916 F5H697 171 aa14.37□□□□□ -0.11
COL9A3-201ENST00000343916 TCTEX1D4Q5JR98 221 aa14.37□□□□□ -0.11
COL9A3-201ENST00000343916 SUMO4Q6EEV6 95 aa14.37□□□□□ -0.11
COL9A3-201ENST00000343916 OR5A1Q8NGJ0 315 aa14.37□□□□□ -0.11
COL9A3-201ENST00000343916 CUBNO60494 3623 aa14.36□□□□□ -0.11
COL9A3-201ENST00000343916 TRBV25-1A0A075B6N4 114 aa14.36□□□□□ -0.11
COL9A3-201ENST00000343916 IGHV3-16A0A0C4DH30 117 aa14.36□□□□□ -0.11
COL9A3-201ENST00000343916 POM121L12Q8N7R1 296 aa14.36□□□□□ -0.11
COL9A3-201ENST00000343916 ODF3Q96PU9 254 aa14.35□□□□□ -0.11
COL9A3-201ENST00000343916 NHP2Q9NX24 153 aaKnown RBP14.35□□□□□ -0.11
COL9A3-201ENST00000343916 CCDC168Q8NDH2 2452 aa14.35□□□□□ -0.11
COL9A3-201ENST00000343916 RNF152Q8N8N0 203 aa14.35□□□□□ -0.11
COL9A3-201ENST00000343916 F8VRH5 84 aa14.34□□□□□ -0.11
COL9A3-201ENST00000343916 MAPKAPK5-AS1Q8N8E1 139 aa14.34□□□□□ -0.11
COL9A3-201ENST00000343916 NEXN-AS1Q8NBZ9 246 aa14.34□□□□□ -0.11
COL9A3-201ENST00000343916 C9orf85Q96MD7 179 aa14.34□□□□□ -0.11
COL9A3-201ENST00000343916 HIGD1BQ9P298 99 aa14.34□□□□□ -0.11
COL9A3-201ENST00000343916 ITPR3Q14573 2671 aa14.34□□□□□ -0.11
COL9A3-201ENST00000343916 H7C1H1 209 aa14.34□□□□□ -0.11
COL9A3-201ENST00000343916 KHDC1LQ5JSQ8 128 aa14.34□□□□□ -0.11
COL9A3-201ENST00000343916 KRTAP1-3Q8IUG1 177 aa14.34□□□□□ -0.11
COL9A3-201ENST00000343916 BAALCQ8WXS3 180 aa14.34□□□□□ -0.11
COL9A3-201ENST00000343916 CHTOPQ9Y3Y2 248 aaKnown RBP14.34□□□□□ -0.11
COL9A3-201ENST00000343916 PPP1R17O96001 155 aa14.33□□□□□ -0.12
COL9A3-201ENST00000343916 PLNP26678 52 aa14.33□□□□□ -0.12
COL9A3-201ENST00000343916 IGHV1OR15-1A0A075B7D0 117 aa14.33□□□□□ -0.12
COL9A3-201ENST00000343916 TRAV12-1A0A0B4J245 112 aa14.33□□□□□ -0.12
COL9A3-201ENST00000343916 KNCNA6PVL3 124 aa14.33□□□□□ -0.12
COL9A3-201ENST00000343916 DUSP14O95147 198 aaKnown RBP14.33□□□□□ -0.12
COL9A3-201ENST00000343916 PLA2G2AP14555 144 aa14.32□□□□□ -0.12
COL9A3-201ENST00000343916 RPL24P83731 157 aaKnown RBP14.32□□□□□ -0.12
COL9A3-201ENST00000343916 AMTNQ6UX39 209 aa14.32□□□□□ -0.12
COL9A3-201ENST00000343916 OR11H1Q8NG94 326 aa14.32□□□□□ -0.12
COL9A3-201ENST00000343916 HTN1P15515 57 aa14.32□□□□□ -0.12
COL9A3-201ENST00000343916 HLA-DRB4P13762 266 aa14.31□□□□□ -0.12
COL9A3-201ENST00000343916 POLR2KP53803 58 aaKnown RBP14.31□□□□□ -0.12
COL9A3-201ENST00000343916 FOXI2Q6ZQN5 318 aa14.31□□□□□ -0.12
COL9A3-201ENST00000343916 CEND1Q8N111 149 aa14.31□□□□□ -0.12
COL9A3-201ENST00000343916 LRRC75A-AS1Q8N1F1 130 aa14.31□□□□□ -0.12
COL9A3-201ENST00000343916 PHLDA1Q8WV24 401 aaPredicted RBP14.31□□□□□ -0.12
COL9A3-201ENST00000343916 HLA-DRB4X5D2U9 266 aa14.31□□□□□ -0.12
COL9A3-201ENST00000343916 RBMY1A1P0DJD3 496 aaKnown RBP14.31□□□□□ -0.12
COL9A3-201ENST00000343916 RBMY1CP0DJD4 496 aa14.31□□□□□ -0.12
COL9A3-201ENST00000343916 RBMY1FQ15415 496 aaKnown RBP14.31□□□□□ -0.12
COL9A3-201ENST00000343916 SDHAF1A6NFY7 115 aa14.3□□□□□ -0.12
COL9A3-201ENST00000343916 DEFB131AP59861 70 aa14.3□□□□□ -0.12
COL9A3-201ENST00000343916 RPL39P62891 51 aaKnown RBP14.3□□□□□ -0.12
COL9A3-201ENST00000343916 ZNF56Q15929 161 aa14.3□□□□□ -0.12
COL9A3-201ENST00000343916 HIST2H2BCQ6DN03 193 aa14.3□□□□□ -0.12
COL9A3-201ENST00000343916 TP53TG1Q9Y2A0 90 aa14.3□□□□□ -0.12
COL9A3-201ENST00000343916 PRSS29PA6NIE9 313 aa14.3□□□□□ -0.12
COL9A3-201ENST00000343916 ZFP2Q6ZN57 461 aa14.3□□□□□ -0.12
COL9A3-201ENST00000343916 Q8N2B8 174 aa14.3□□□□□ -0.12
COL9A3-201ENST00000343916 NF1P21359 2839 aa14.29□□□□□ -0.12
COL9A3-201ENST00000343916 TEX48A0A1B0GUV7 120 aa14.29□□□□□ -0.12
COL9A3-201ENST00000343916 HELZ2Q9BYK8 2649 aaKnown RBP14.29□□□□□ -0.12
COL9A3-201ENST00000343916 TMEM238C9JI98 176 aa14.29□□□□□ -0.12
COL9A3-201ENST00000343916 PRM2P04554 102 aa14.29□□□□□ -0.12
COL9A3-201ENST00000343916 CRYGDP07320 174 aa14.29□□□□□ -0.12
COL9A3-201ENST00000343916 LINC01619G3V211 115 aa14.28□□□□□ -0.12
COL9A3-201ENST00000343916 TSHBP01222 138 aa14.28□□□□□ -0.12
COL9A3-201ENST00000343916 TMEM61Q8N0U2 210 aa14.28□□□□□ -0.12
COL9A3-201ENST00000343916 WFDC11Q8NEX6 87 aa14.28□□□□□ -0.12
COL9A3-201ENST00000343916 CYSLTR1Q9Y271 337 aa14.28□□□□□ -0.12
COL9A3-201ENST00000343916 ZNF256Q9Y2P7 627 aaPredicted RBP14.28□□□□□ -0.12
COL9A3-201ENST00000343916 ZNF876PQ49A33 203 aa14.27□□□□□ -0.12
COL9A3-201ENST00000343916 MORN3Q6PF18 240 aaPredicted RBP14.27□□□□□ -0.12
COL9A3-201ENST00000343916 SYT8Q8NBV8 401 aa14.27□□□□□ -0.12
COL9A3-201ENST00000343916 KIR2DL4Q99706 377 aa14.27□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms