RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 SNRNP25Q9BV90 132 aaKnown RBP1.07□□□□□ -2.24
CD44-239ENST00000639002 COA4Q9NYJ1 87 aa1.07□□□□□ -2.24
CD44-239ENST00000639002 FKBP11Q9NYL4 201 aa1.07□□□□□ -2.24
CD44-239ENST00000639002 TAS2R8Q9NYW2 309 aa1.07□□□□□ -2.24
CD44-239ENST00000639002 BOKQ9UMX3 212 aaPredicted RBP1.07□□□□□ -2.24
CD44-239ENST00000639002 ZFP30Q9Y2G7 519 aa1.07□□□□□ -2.24
CD44-239ENST00000639002 NOP16Q9Y3C1 178 aaKnown RBP1.07□□□□□ -2.24
CD44-239ENST00000639002 DNAJC15Q9Y5T4 150 aa1.07□□□□□ -2.24
CD44-239ENST00000639002 FRMPD1Q5SYB0 1578 aa1.07□□□□□ -2.24
CD44-239ENST00000639002 C5orf42Q9H799 3197 aa1.07□□□□□ -2.24
CD44-239ENST00000639002 ARHGAP31Q2M1Z3 1444 aa1.06□□□□□ -2.24
CD44-239ENST00000639002 ERBINQ96RT1 1412 aa1.06□□□□□ -2.24
CD44-239ENST00000639002 LAMB2P55268 1798 aa1.06□□□□□ -2.24
CD44-239ENST00000639002 KIDINS220Q9ULH0 1771 aa1.06□□□□□ -2.24
CD44-239ENST00000639002 NRKQ7Z2Y5 1582 aa1.06□□□□□ -2.24
CD44-239ENST00000639002 RB1CC1Q8TDY2 1594 aa1.06□□□□□ -2.24
CD44-239ENST00000639002 TRAV30A0A087WSZ9 112 aa1.06□□□□□ -2.24
CD44-239ENST00000639002 IGKV2D-26A0A0A0MRZ7 120 aa1.06□□□□□ -2.24
CD44-239ENST00000639002 TRAV10A0A0B4J240 114 aa1.06□□□□□ -2.24
CD44-239ENST00000639002 IBA57-AS1B1ANH7 110 aa1.06□□□□□ -2.24
CD44-239ENST00000639002 APOC4-APOC2K7ER74 178 aa1.06□□□□□ -2.24
CD44-239ENST00000639002 M0R129 80 aa1.06□□□□□ -2.24
CD44-239ENST00000639002 M0R143 59 aa1.06□□□□□ -2.24
CD44-239ENST00000639002 M0R2P5 195 aa1.06□□□□□ -2.24
CD44-239ENST00000639002 ZNF737O75373 536 aa1.06□□□□□ -2.24
CD44-239ENST00000639002 SNCGO76070 127 aa1.06□□□□□ -2.24
CD44-239ENST00000639002 TNFP01375 233 aa1.06□□□□□ -2.24
CD44-239ENST00000639002 APOC2P02655 101 aa1.06□□□□□ -2.24
CD44-239ENST00000639002 PIPP12273 146 aaPredicted RBP1.06□□□□□ -2.24
CD44-239ENST00000639002 GNG2P59768 71 aa1.06□□□□□ -2.24
CD44-239ENST00000639002 ROMO1P60602 79 aa1.06□□□□□ -2.24
CD44-239ENST00000639002 C1orf134Q5TEV5 83 aa1.06□□□□□ -2.24
CD44-239ENST00000639002 OR2T2Q6IF00 324 aa1.06□□□□□ -2.24
CD44-239ENST00000639002 MRPL54Q6P161 138 aaKnown RBP1.06□□□□□ -2.24
CD44-239ENST00000639002 ATP11AUNQ6ZP68 121 aa1.06□□□□□ -2.24
CD44-239ENST00000639002 C3orf62Q6ZUJ4 267 aa1.06□□□□□ -2.24
CD44-239ENST00000639002 SNX29P2Q8IUI4 249 aa1.06□□□□□ -2.24
CD44-239ENST00000639002 Q8N814 137 aa1.06□□□□□ -2.24
CD44-239ENST00000639002 DPH3Q96FX2 82 aa1.06□□□□□ -2.24
CD44-239ENST00000639002 SDF2Q99470 211 aa1.06□□□□□ -2.24
CD44-239ENST00000639002 NABP2Q9BQ15 211 aa1.06□□□□□ -2.24
CD44-239ENST00000639002 NAA38Q9BRA0 125 aaKnown RBP1.06□□□□□ -2.24
CD44-239ENST00000639002 TXNDC17Q9BRA2 123 aa1.06□□□□□ -2.24
CD44-239ENST00000639002 LSM2Q9Y333 95 aaKnown RBP1.06□□□□□ -2.24
CD44-239ENST00000639002 SMARCA4P51532 1647 aa1.06□□□□□ -2.24
CD44-239ENST00000639002 DSTQ03001 7570 aaKnown RBP1.06□□□□□ -2.24
CD44-239ENST00000639002 ITPR1Q14643 2758 aa1.06□□□□□ -2.24
CD44-239ENST00000639002 AKAP13Q12802 2813 aa1.06□□□□□ -2.24
CD44-239ENST00000639002 MALRD1Q5VYJ5 2156 aa1.06□□□□□ -2.24
CD44-239ENST00000639002 CFTRP13569 1480 aa1.05□□□□□ -2.24
CD44-239ENST00000639002 MBD5Q9P267 1494 aa1.05□□□□□ -2.24
CD44-239ENST00000639002 LAMA3Q16787 3333 aa1.05□□□□□ -2.24
CD44-239ENST00000639002 MGAMO43451 1857 aa1.05□□□□□ -2.24
CD44-239ENST00000639002 SLIT2O94813 1529 aa1.05□□□□□ -2.24
CD44-239ENST00000639002 HELZP42694 1942 aaKnown RBP1.05□□□□□ -2.24
CD44-239ENST00000639002 GOLGB1Q14789 3259 aaKnown RBP1.05□□□□□ -2.24
CD44-239ENST00000639002 CEP290O15078 2479 aa1.05□□□□□ -2.24
CD44-239ENST00000639002 ARHGAP32A7KAX9 2087 aa1.05□□□□□ -2.24
CD44-239ENST00000639002 TLN2Q9Y4G6 2542 aa1.05□□□□□ -2.24
CD44-239ENST00000639002 A0A087WSZ3 146 aa1.05□□□□□ -2.24
CD44-239ENST00000639002 TRAV2A0A0B4J234 112 aa1.05□□□□□ -2.24
CD44-239ENST00000639002 TRAV12-1A0A0B4J245 112 aa1.05□□□□□ -2.24
CD44-239ENST00000639002 A6NIN4 97 aa1.05□□□□□ -2.24
CD44-239ENST00000639002 KLF7O75840 302 aaPredicted RBP1.05□□□□□ -2.24
CD44-239ENST00000639002 IL5P05113 134 aa1.05□□□□□ -2.24
CD44-239ENST00000639002 CD14P08571 375 aa1.05□□□□□ -2.24
CD44-239ENST00000639002 CXCL8P10145 99 aa1.05□□□□□ -2.24
CD44-239ENST00000639002 PKIAP61925 76 aa1.05□□□□□ -2.24
CD44-239ENST00000639002 FAM74A1Q5RGS3 127 aa1.05□□□□□ -2.24
CD44-239ENST00000639002 C9orf153Q5TBE3 101 aa1.05□□□□□ -2.24
CD44-239ENST00000639002 C12orf73Q69YU5 71 aa1.05□□□□□ -2.24
CD44-239ENST00000639002 RPL7L1Q6DKI1 246 aaKnown RBP1.05□□□□□ -2.24
CD44-239ENST00000639002 CLECL1Q8IZS7 167 aa1.05□□□□□ -2.24
CD44-239ENST00000639002 VSTM2AQ8TAG5 236 aa1.05□□□□□ -2.24
CD44-239ENST00000639002 SPTSSAQ969W0 71 aa1.05□□□□□ -2.24
CD44-239ENST00000639002 MRPL57Q9BQC6 102 aaKnown RBP1.05□□□□□ -2.24
CD44-239ENST00000639002 SEC11CQ9BY50 192 aa1.05□□□□□ -2.24
CD44-239ENST00000639002 AGPAT4-IT1Q9H0P7 198 aa1.05□□□□□ -2.24
CD44-239ENST00000639002 Q9H521 79 aa1.05□□□□□ -2.24
CD44-239ENST00000639002 PRO2289Q9P1D8 64 aa1.05□□□□□ -2.24
CD44-239ENST00000639002 CCL26Q9Y258 94 aa1.05□□□□□ -2.24
CD44-239ENST00000639002 IER3IP1Q9Y5U9 82 aa1.05□□□□□ -2.24
CD44-239ENST00000639002 LHFPL6Q9Y693 200 aa1.05□□□□□ -2.24
CD44-239ENST00000639002 CHCHD2Q9Y6H1 151 aaPredicted RBP1.05□□□□□ -2.24
CD44-239ENST00000639002 SERP1Q9Y6X1 66 aa1.05□□□□□ -2.24
CD44-239ENST00000639002 PRDM2Q13029 1718 aa1.05□□□□□ -2.24
CD44-239ENST00000639002 USP34Q70CQ2 3546 aa1.05□□□□□ -2.24
CD44-239ENST00000639002 STRCQ7RTU9 1775 aa1.05□□□□□ -2.24
CD44-239ENST00000639002 KIAA1549LQ6ZVL6 1849 aa1.05□□□□□ -2.24
CD44-239ENST00000639002 PIEZO2Q9H5I5 2752 aa1.05□□□□□ -2.24
CD44-239ENST00000639002 A2ML1A8K2U0 1454 aa1.05□□□□□ -2.24
CD44-239ENST00000639002 SCN3AQ9NY46 2000 aa1.05□□□□□ -2.24
CD44-239ENST00000639002 GLI3P10071 1580 aa1.04□□□□□ -2.24
CD44-239ENST00000639002 TTC37Q6PGP7 1564 aa1.04□□□□□ -2.24
CD44-239ENST00000639002 TRPM7Q96QT4 1865 aa1.04□□□□□ -2.24
CD44-239ENST00000639002 MTORP42345 2549 aa1.04□□□□□ -2.24
CD44-239ENST00000639002 LOC100130705A0A1B0GUX0 176 aa1.04□□□□□ -2.24
CD44-239ENST00000639002 PVALEFA0A1B0GWK0 134 aa1.04□□□□□ -2.24
CD44-239ENST00000639002 FAM24AA6NFZ4 105 aa1.04□□□□□ -2.24
CD44-239ENST00000639002 MCRIP1C9JLW8 97 aa1.04□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 94.7 ms