RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 LINC01620Q4KN68 170 aa12.83□□□□□ -0.36
CLN3-262ENST00000637699 ATP6V0E2Q8NHE4 81 aa12.83□□□□□ -0.36
CLN3-262ENST00000637699 GTSF1LQ9H1H1 148 aa12.83□□□□□ -0.36
CLN3-262ENST00000637699 SH3BGRL3Q9H299 93 aa12.83□□□□□ -0.36
CLN3-262ENST00000637699 ARL14EPLP0DKL9 152 aa12.82□□□□□ -0.36
CLN3-262ENST00000637699 RGS21Q2M5E4 152 aa12.82□□□□□ -0.36
CLN3-262ENST00000637699 FAM74A1Q5RGS3 127 aa12.82□□□□□ -0.36
CLN3-262ENST00000637699 PSMG3Q9BT73 122 aaPredicted RBP12.82□□□□□ -0.36
CLN3-262ENST00000637699 FAT3Q8TDW7 4589 aa12.81□□□□□ -0.36
CLN3-262ENST00000637699 RNF222A6NCQ9 220 aa12.81□□□□□ -0.36
CLN3-262ENST00000637699 CDC34P49427 236 aaPredicted RBP12.81□□□□□ -0.36
CLN3-262ENST00000637699 GNG5P63218 68 aa12.81□□□□□ -0.36
CLN3-262ENST00000637699 SERTAD4-AS1Q5TG53 156 aa12.81□□□□□ -0.36
CLN3-262ENST00000637699 INO80EQ8NBZ0 244 aaPredicted RBP12.81□□□□□ -0.36
CLN3-262ENST00000637699 OR2T35Q8NGX2 323 aa12.81□□□□□ -0.36
CLN3-262ENST00000637699 TNFSF18Q9UNG2 199 aa12.81□□□□□ -0.36
CLN3-262ENST00000637699 FXYD6-FXYD2A0A087WZ82 144 aa12.8□□□□□ -0.36
CLN3-262ENST00000637699 G3V3Q6 166 aa12.8□□□□□ -0.36
CLN3-262ENST00000637699 CIDEAO60543 219 aa12.8□□□□□ -0.36
CLN3-262ENST00000637699 STAG3L2P0CL84 134 aa12.8□□□□□ -0.36
CLN3-262ENST00000637699 STAG3L3P0CL85 134 aa12.8□□□□□ -0.36
CLN3-262ENST00000637699 RPL7L1Q6DKI1 246 aaKnown RBP12.8□□□□□ -0.36
CLN3-262ENST00000637699 SYT8Q8NBV8 401 aa12.8□□□□□ -0.36
CLN3-262ENST00000637699 RAB24Q969Q5 203 aa12.8□□□□□ -0.36
CLN3-262ENST00000637699 SGK494Q96LW2 274 aa12.8□□□□□ -0.36
CLN3-262ENST00000637699 TRAV8-3A0A0A6YYJ7 113 aa12.79□□□□□ -0.36
CLN3-262ENST00000637699 SERF2P84101 59 aa12.79□□□□□ -0.36
CLN3-262ENST00000637699 SCXQ7RTU7 201 aa12.79□□□□□ -0.36
CLN3-262ENST00000637699 DAZ4Q86SG3 579 aaKnown RBP12.79□□□□□ -0.36
CLN3-262ENST00000637699 SUN5Q8TC36 379 aa12.79□□□□□ -0.36
CLN3-262ENST00000637699 BAALCQ8WXS3 180 aa12.79□□□□□ -0.36
CLN3-262ENST00000637699 DAZ3Q9NR90 486 aaKnown RBP12.79□□□□□ -0.36
CLN3-262ENST00000637699 C11orf21Q9P2W6 132 aa12.79□□□□□ -0.36
CLN3-262ENST00000637699 PGPEP1LA6NFU8 196 aa12.78□□□□□ -0.36
CLN3-262ENST00000637699 ARL6IP6Q8N6S5 226 aa12.78□□□□□ -0.36
CLN3-262ENST00000637699 MBP02144 154 aa12.77□□□□□ -0.37
CLN3-262ENST00000637699 MGST1P10620 155 aaKnown RBP12.77□□□□□ -0.37
CLN3-262ENST00000637699 GCHFRP30047 84 aa12.77□□□□□ -0.37
CLN3-262ENST00000637699 ZNF80P51504 273 aaPredicted RBP12.77□□□□□ -0.37
CLN3-262ENST00000637699 ZNF506Q5JVG8 444 aa12.77□□□□□ -0.37
CLN3-262ENST00000637699 GAGE12JA6NER3 117 aa12.76□□□□□ -0.37
CLN3-262ENST00000637699 RBFOX3A6NFN3 312 aa12.76□□□□□ -0.37
CLN3-262ENST00000637699 GAGE1Q13065 139 aa12.76□□□□□ -0.37
CLN3-262ENST00000637699 GAGE4Q13068 117 aa12.76□□□□□ -0.37
CLN3-262ENST00000637699 GAGE5Q13069 117 aa12.76□□□□□ -0.37
CLN3-262ENST00000637699 GAGE13Q4V321 117 aa12.76□□□□□ -0.37
CLN3-262ENST00000637699 TMEM75Q8N9X5 138 aa12.76□□□□□ -0.37
CLN3-262ENST00000637699 C9orf85Q96MD7 179 aa12.76□□□□□ -0.37
CLN3-262ENST00000637699 NDFIP1Q9BT67 221 aa12.76□□□□□ -0.37
CLN3-262ENST00000637699 TOR2AQ5JU69 321 aa12.75□□□□□ -0.37
CLN3-262ENST00000637699 ACTR3CQ9C0K3 210 aaPredicted RBP12.75□□□□□ -0.37
CLN3-262ENST00000637699 BORCS7-ASMTA0A0B4J1R7 106 aa12.74□□□□□ -0.37
CLN3-262ENST00000637699 GGTLC3B5MD39 225 aa12.74□□□□□ -0.37
CLN3-262ENST00000637699 TAAR5O14804 337 aa12.74□□□□□ -0.37
CLN3-262ENST00000637699 ZNF726P1Q15940 193 aa12.74□□□□□ -0.37
CLN3-262ENST00000637699 SMLR1H3BR10 107 aa12.73□□□□□ -0.37
CLN3-262ENST00000637699 CXorf1O96002 111 aa12.73□□□□□ -0.37
CLN3-262ENST00000637699 GCGP01275 180 aa12.73□□□□□ -0.37
CLN3-262ENST00000637699 KRTAP10-4P60372 401 aaPredicted RBP12.73□□□□□ -0.37
CLN3-262ENST00000637699 SUMO1P63165 101 aaKnown RBP12.73□□□□□ -0.37
CLN3-262ENST00000637699 C5orf17Q8NAS9 161 aa12.73□□□□□ -0.37
CLN3-262ENST00000637699 CHAC1Q9BUX1 264 aa12.73□□□□□ -0.37
CLN3-262ENST00000637699 COX11Q9Y6N1 276 aa12.73□□□□□ -0.37
CLN3-262ENST00000637699 ARPC5O15511 151 aa12.72□□□□□ -0.37
CLN3-262ENST00000637699 TCRAP04437 139 aa12.72□□□□□ -0.37
CLN3-262ENST00000637699 RNASE3P12724 160 aaKnown RBP12.72□□□□□ -0.37
CLN3-262ENST00000637699 PTH2Q96A98 100 aa12.72□□□□□ -0.37
CLN3-262ENST00000637699 DNAJC30Q96LL9 226 aa12.72□□□□□ -0.37
CLN3-262ENST00000637699 PARLQ9H300 379 aa12.72□□□□□ -0.37
CLN3-262ENST00000637699 CYTL1Q9NRR1 136 aa12.72□□□□□ -0.37
CLN3-262ENST00000637699 TMEM167BQ9NRX6 74 aa12.72□□□□□ -0.37
CLN3-262ENST00000637699 Q9UF83 564 aa12.72□□□□□ -0.37
CLN3-262ENST00000637699 SERTM2A0A1B0GWG4 89 aa12.71□□□□□ -0.37
CLN3-262ENST00000637699 OXTP01178 125 aa12.71□□□□□ -0.37
CLN3-262ENST00000637699 Q8N976 141 aa12.71□□□□□ -0.37
CLN3-262ENST00000637699 CIRBP-AS1Q8TBR5 109 aa12.71□□□□□ -0.37
CLN3-262ENST00000637699 EPDR1Q9UM22 224 aa12.71□□□□□ -0.37
CLN3-262ENST00000637699 IGKV2D-24A0A075B6R9 120 aa12.7□□□□□ -0.38
CLN3-262ENST00000637699 IGLV2-11P01706 119 aa12.7□□□□□ -0.38
CLN3-262ENST00000637699 LINC00694P0DN24 101 aa12.7□□□□□ -0.38
CLN3-262ENST00000637699 CYB561D1Q8N8Q1 229 aa12.7□□□□□ -0.38
CLN3-262ENST00000637699 RMI2Q96E14 147 aa12.7□□□□□ -0.38
CLN3-262ENST00000637699 SAMD10Q9BYL1 202 aa12.7□□□□□ -0.38
CLN3-262ENST00000637699 PLA2G2DQ9UNK4 145 aa12.7□□□□□ -0.38
CLN3-262ENST00000637699 PSG8Q9UQ74 426 aa12.7□□□□□ -0.38
CLN3-262ENST00000637699 PKHD1L1Q86WI1 4243 aa12.7□□□□□ -0.38
CLN3-262ENST00000637699 A0A087WWC5 75 aa12.69□□□□□ -0.38
CLN3-262ENST00000637699 CTXND1A0A1B0GTU2 59 aa12.69□□□□□ -0.38
CLN3-262ENST00000637699 K7EQM0 130 aa12.69□□□□□ -0.38
CLN3-262ENST00000637699 LGALSLQ3ZCW2 172 aaPredicted RBP12.69□□□□□ -0.38
CLN3-262ENST00000637699 SMUG1Q53HV7 270 aa12.69□□□□□ -0.38
CLN3-262ENST00000637699 ZFP2Q6ZN57 461 aa12.69□□□□□ -0.38
CLN3-262ENST00000637699 URGCP-MRPS24S4R325 110 aa12.69□□□□□ -0.38
CLN3-262ENST00000637699 A8MWV9 139 aa12.68□□□□□ -0.38
CLN3-262ENST00000637699 FGF8P55075 233 aaPredicted RBP12.68□□□□□ -0.38
CLN3-262ENST00000637699 ZFP69Q49AA0 526 aa12.68□□□□□ -0.38
CLN3-262ENST00000637699 PRNTQ86SH4 94 aa12.68□□□□□ -0.38
CLN3-262ENST00000637699 C14orf178Q8N769 122 aaPredicted RBP12.68□□□□□ -0.38
CLN3-262ENST00000637699 JPT2Q9H910 190 aa12.68□□□□□ -0.38
CLN3-262ENST00000637699 KLK12Q9UKR0 248 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms