RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 ZNRF2Q8NHG8 242 aa9.6□□□□□ -0.87
UPF1-205ENST00000598209 PTH2Q96A98 100 aa9.6□□□□□ -0.87
UPF1-205ENST00000598209 DERL1Q9BUN8 251 aa9.6□□□□□ -0.87
UPF1-205ENST00000598209 GRIFINA4D1Z8 144 aa9.59□□□□□ -0.87
UPF1-205ENST00000598209 H3BVH4 76 aa9.59□□□□□ -0.87
UPF1-205ENST00000598209 RS1O15537 224 aa9.59□□□□□ -0.87
UPF1-205ENST00000598209 BLOC1S1P78537 153 aa9.59□□□□□ -0.87
UPF1-205ENST00000598209 LINC01559Q495D7 138 aa9.59□□□□□ -0.87
UPF1-205ENST00000598209 DNLZQ5SXM8 178 aa9.59□□□□□ -0.87
UPF1-205ENST00000598209 MLST8Q9BVC4 326 aa9.59□□□□□ -0.87
UPF1-205ENST00000598209 IL36BQ9NZH7 164 aa9.59□□□□□ -0.87
UPF1-205ENST00000598209 TMSB15BA0A087X1C1 80 aa9.58□□□□□ -0.88
UPF1-205ENST00000598209 PDE6DO43924 150 aa9.58□□□□□ -0.88
UPF1-205ENST00000598209 MRPL23Q16540 153 aaKnown RBP9.58□□□□□ -0.88
UPF1-205ENST00000598209 CFAP126Q5VTH2 177 aa9.58□□□□□ -0.88
UPF1-205ENST00000598209 Q6ZR54 194 aa9.58□□□□□ -0.88
UPF1-205ENST00000598209 VAX2Q9UIW0 290 aa9.58□□□□□ -0.88
UPF1-205ENST00000598209 DNAH10Q8IVF4 4471 aa9.57□□□□□ -0.88
UPF1-205ENST00000598209 ARMS2P0C7Q2 107 aa9.57□□□□□ -0.88
UPF1-205ENST00000598209 GYPEP15421 78 aa9.57□□□□□ -0.88
UPF1-205ENST00000598209 GATA1P15976 413 aaPredicted RBP9.57□□□□□ -0.88
UPF1-205ENST00000598209 TAGLN2P37802 199 aaKnown RBP9.57□□□□□ -0.88
UPF1-205ENST00000598209 CENPWQ5EE01 88 aa9.57□□□□□ -0.88
UPF1-205ENST00000598209 PRR27Q6MZM9 219 aa9.57□□□□□ -0.88
UPF1-205ENST00000598209 ZNF575Q86XF7 245 aa9.57□□□□□ -0.88
UPF1-205ENST00000598209 PCNPQ8WW12 178 aaKnown RBP9.57□□□□□ -0.88
UPF1-205ENST00000598209 MRPS16Q9Y3D3 137 aaKnown RBP9.57□□□□□ -0.88
UPF1-205ENST00000598209 IGHV3-73A0A0B4J1V6 119 aa9.56□□□□□ -0.88
UPF1-205ENST00000598209 K7EQD1 137 aa9.56□□□□□ -0.88
UPF1-205ENST00000598209 CIDEAO60543 219 aa9.56□□□□□ -0.88
UPF1-205ENST00000598209 PIK3CD-AS1Q5SR53 167 aa9.56□□□□□ -0.88
UPF1-205ENST00000598209 UPK3BQ9BT76 320 aa9.56□□□□□ -0.88
UPF1-205ENST00000598209 Q9H8V8 135 aa9.56□□□□□ -0.88
UPF1-205ENST00000598209 MED9Q9NWA0 146 aa9.56□□□□□ -0.88
UPF1-205ENST00000598209 EPPK1P58107 5090 aaKnown RBP9.55□□□□□ -0.88
UPF1-205ENST00000598209 FRAS1Q86XX4 4008 aa9.55□□□□□ -0.88
UPF1-205ENST00000598209 LOC100131303A0A0U1RQF7 123 aa9.55□□□□□ -0.88
UPF1-205ENST00000598209 RAB19A4D1S5 217 aa9.55□□□□□ -0.88
UPF1-205ENST00000598209 A8MWV9 139 aa9.55□□□□□ -0.88
UPF1-205ENST00000598209 SRIP30626 198 aa9.55□□□□□ -0.88
UPF1-205ENST00000598209 RPL19P84098 196 aaKnown RBP9.55□□□□□ -0.88
UPF1-205ENST00000598209 DMRTA1Q5VZB9 504 aa9.55□□□□□ -0.88
UPF1-205ENST00000598209 NEGR1Q7Z3B1 354 aa9.55□□□□□ -0.88
UPF1-205ENST00000598209 SYT8Q8NBV8 401 aa9.55□□□□□ -0.88
UPF1-205ENST00000598209 LYPD6BQ8NI32 183 aa9.55□□□□□ -0.88
UPF1-205ENST00000598209 PARLQ9H300 379 aa9.55□□□□□ -0.88
UPF1-205ENST00000598209 SCRT2Q9NQ03 307 aa9.55□□□□□ -0.88
UPF1-205ENST00000598209 PHLDA3Q9Y5J5 127 aa9.55□□□□□ -0.88
UPF1-205ENST00000598209 NBDYA0A0U1RRE5 68 aa9.54□□□□□ -0.88
UPF1-205ENST00000598209 IGLV2-8P01709 118 aa9.54□□□□□ -0.88
UPF1-205ENST00000598209 MGST1P10620 155 aaKnown RBP9.54□□□□□ -0.88
UPF1-205ENST00000598209 GNG4P50150 75 aa9.54□□□□□ -0.88
UPF1-205ENST00000598209 SLC25A29Q8N8R3 303 aa9.54□□□□□ -0.88
UPF1-205ENST00000598209 JPT2Q9H910 190 aa9.54□□□□□ -0.88
UPF1-205ENST00000598209 RBFOX3A6NFN3 312 aa9.53□□□□□ -0.88
UPF1-205ENST00000598209 CXCL1P09341 107 aa9.53□□□□□ -0.88
UPF1-205ENST00000598209 MED14OSP0DP75 135 aa9.53□□□□□ -0.88
UPF1-205ENST00000598209 LYPD5Q6UWN5 251 aa9.53□□□□□ -0.88
UPF1-205ENST00000598209 SMIM12Q96EX1 92 aa9.53□□□□□ -0.88
UPF1-205ENST00000598209 TRBV20OR9-2A0A075B6H5 130 aa9.52□□□□□ -0.89
UPF1-205ENST00000598209 TRBV6-4A0A1B0GX49 114 aa9.52□□□□□ -0.89
UPF1-205ENST00000598209 M0R381 172 aa9.52□□□□□ -0.89
UPF1-205ENST00000598209 RTL8CO15255 209 aa9.52□□□□□ -0.89
UPF1-205ENST00000598209 RHOHQ15669 191 aa9.52□□□□□ -0.89
UPF1-205ENST00000598209 C1orf134Q5TEV5 83 aa9.52□□□□□ -0.89
UPF1-205ENST00000598209 ZFP2Q6ZN57 461 aa9.52□□□□□ -0.89
UPF1-205ENST00000598209 LINC00336Q6ZUF6 198 aa9.52□□□□□ -0.89
UPF1-205ENST00000598209 ZFP82Q8N141 532 aa9.52□□□□□ -0.89
UPF1-205ENST00000598209 DAZAP1Q96EP5 407 aaKnown RBP9.52□□□□□ -0.89
UPF1-205ENST00000598209 PRADC1Q9BSG0 188 aa9.52□□□□□ -0.89
UPF1-205ENST00000598209 SAMD10Q9BYL1 202 aa9.52□□□□□ -0.89
UPF1-205ENST00000598209 NXPH4O95158 308 aa9.51□□□□□ -0.89
UPF1-205ENST00000598209 SOHLH1Q5JUK2 328 aa9.51□□□□□ -0.89
UPF1-205ENST00000598209 UFSP1Q6NVU6 142 aa9.51□□□□□ -0.89
UPF1-205ENST00000598209 Q6ZSN1 163 aa9.51□□□□□ -0.89
UPF1-205ENST00000598209 SH2D6Q7Z4S9 175 aa9.51□□□□□ -0.89
UPF1-205ENST00000598209 SFRP2Q96HF1 295 aa9.51□□□□□ -0.89
UPF1-205ENST00000598209 C19orf71A6NCJ1 209 aa9.5□□□□□ -0.89
UPF1-205ENST00000598209 RHODO00212 210 aa9.5□□□□□ -0.89
UPF1-205ENST00000598209 SNAI2O43623 268 aa9.5□□□□□ -0.89
UPF1-205ENST00000598209 TTC32Q5I0X7 151 aa9.5□□□□□ -0.89
UPF1-205ENST00000598209 TOR2AQ5JU69 321 aa9.5□□□□□ -0.89
UPF1-205ENST00000598209 FAM74A4Q5TZK3 123 aa9.5□□□□□ -0.89
UPF1-205ENST00000598209 OR10AG1Q8NH19 301 aa9.5□□□□□ -0.89
UPF1-205ENST00000598209 BIN3Q9NQY0 253 aa9.5□□□□□ -0.89
UPF1-205ENST00000598209 A0A087WWL8 130 aa9.49□□□□□ -0.89
UPF1-205ENST00000598209 PRSS29PA6NIE9 313 aa9.49□□□□□ -0.89
UPF1-205ENST00000598209 TMEM250H0YL14 139 aa9.49□□□□□ -0.89
UPF1-205ENST00000598209 SIVA1O15304 175 aa9.49□□□□□ -0.89
UPF1-205ENST00000598209 OR5AL1P0C617 328 aa9.49□□□□□ -0.89
UPF1-205ENST00000598209 C6orf223Q8N319 242 aa9.49□□□□□ -0.89
UPF1-205ENST00000598209 OR2D3Q8NGH3 330 aa9.49□□□□□ -0.89
UPF1-205ENST00000598209 SSBP4Q9BWG4 385 aaPredicted RBP9.49□□□□□ -0.89
UPF1-205ENST00000598209 KRTAP1-5Q9BYS1 174 aa9.49□□□□□ -0.89
UPF1-205ENST00000598209 DNAH2Q9P225 4427 aa9.49□□□□□ -0.89
UPF1-205ENST00000598209 MUC21A0A0G2JKD1 596 aa9.48□□□□□ -0.89
UPF1-205ENST00000598209 MUC21A0A140T8X8 626 aa9.48□□□□□ -0.89
UPF1-205ENST00000598209 A0A1W2PPQ1 181 aa9.48□□□□□ -0.89
UPF1-205ENST00000598209 P01737 135 aa9.48□□□□□ -0.89
UPF1-205ENST00000598209 CRYGDP07320 174 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms