RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 WFDC2Q14508 124 aa7.87□□□□□ -1.15
LIG3-209ENST00000586435 ZFP69Q49AA0 526 aa7.87□□□□□ -1.15
LIG3-209ENST00000586435 PIK3CD-AS1Q5SR53 167 aa7.87□□□□□ -1.15
LIG3-209ENST00000586435 OR10G9Q8NGN4 311 aa7.87□□□□□ -1.15
LIG3-209ENST00000586435 OR10G7Q8NGN6 311 aa7.87□□□□□ -1.15
LIG3-209ENST00000586435 SGK494Q96LW2 274 aa7.87□□□□□ -1.15
LIG3-209ENST00000586435 IGHV3-73A0A0B4J1V6 119 aa7.86□□□□□ -1.15
LIG3-209ENST00000586435 J3QL48 77 aa7.86□□□□□ -1.15
LIG3-209ENST00000586435 SSNA1O43805 119 aa7.86□□□□□ -1.15
LIG3-209ENST00000586435 IGLV2-11P01706 119 aa7.86□□□□□ -1.15
LIG3-209ENST00000586435 SMUG1Q53HV7 270 aa7.86□□□□□ -1.15
LIG3-209ENST00000586435 TOR2AQ5JU69 321 aa7.86□□□□□ -1.15
LIG3-209ENST00000586435 ZFP2Q6ZN57 461 aa7.86□□□□□ -1.15
LIG3-209ENST00000586435 TMEM75Q8N9X5 138 aa7.86□□□□□ -1.15
LIG3-209ENST00000586435 OR2G3Q8NGZ4 309 aa7.86□□□□□ -1.15
LIG3-209ENST00000586435 PSG8Q9UQ74 426 aa7.86□□□□□ -1.15
LIG3-209ENST00000586435 A8MWV9 139 aa7.85□□□□□ -1.15
LIG3-209ENST00000586435 KRTAP29-1A8MX34 341 aaPredicted RBP7.85□□□□□ -1.15
LIG3-209ENST00000586435 HMGB3O15347 200 aaKnown RBP7.85□□□□□ -1.15
LIG3-209ENST00000586435 FLI1Q01543 452 aaPredicted RBP7.85□□□□□ -1.15
LIG3-209ENST00000586435 PSMG3Q9BT73 122 aaPredicted RBP7.85□□□□□ -1.15
LIG3-209ENST00000586435 PARLQ9H300 379 aa7.85□□□□□ -1.15
LIG3-209ENST00000586435 A0A087WWC5 75 aa7.84□□□□□ -1.15
LIG3-209ENST00000586435 GGTLC3B5MD39 225 aa7.84□□□□□ -1.15
LIG3-209ENST00000586435 GCHFRP30047 84 aa7.84□□□□□ -1.15
LIG3-209ENST00000586435 SAPCD1Q5SSQ6 148 aa7.84□□□□□ -1.15
LIG3-209ENST00000586435 LINC00528Q8N1L1 170 aa7.84□□□□□ -1.15
LIG3-209ENST00000586435 Q8N3U1 123 aa7.84□□□□□ -1.15
LIG3-209ENST00000586435 CYB561D1Q8N8Q1 229 aa7.84□□□□□ -1.15
LIG3-209ENST00000586435 DEFB104AQ8WTQ1 72 aa7.84□□□□□ -1.15
LIG3-209ENST00000586435 RAB24Q969Q5 203 aa7.84□□□□□ -1.15
LIG3-209ENST00000586435 TMEM167BQ9NRX6 74 aa7.84□□□□□ -1.15
LIG3-209ENST00000586435 EPDR1Q9UM22 224 aa7.84□□□□□ -1.15
LIG3-209ENST00000586435 COX11Q9Y6N1 276 aa7.84□□□□□ -1.15
LIG3-209ENST00000586435 SUMO1P63165 101 aaKnown RBP7.83□□□□□ -1.16
LIG3-209ENST00000586435 UFSP1Q6NVU6 142 aa7.83□□□□□ -1.16
LIG3-209ENST00000586435 PRNTQ86SH4 94 aa7.83□□□□□ -1.16
LIG3-209ENST00000586435 LINC00479Q96M42 142 aa7.83□□□□□ -1.16
LIG3-209ENST00000586435 IGKV3D-20A0A0C4DH25 116 aa7.82□□□□□ -1.16
LIG3-209ENST00000586435 GAGE12JA6NER3 117 aa7.82□□□□□ -1.16
LIG3-209ENST00000586435 CXorf1O96002 111 aa7.82□□□□□ -1.16
LIG3-209ENST00000586435 MBP02144 154 aa7.82□□□□□ -1.16
LIG3-209ENST00000586435 FGF8P55075 233 aaPredicted RBP7.82□□□□□ -1.16
LIG3-209ENST00000586435 SERF2P84101 59 aa7.82□□□□□ -1.16
LIG3-209ENST00000586435 GAGE1Q13065 139 aa7.82□□□□□ -1.16
LIG3-209ENST00000586435 GAGE4Q13068 117 aa7.82□□□□□ -1.16
LIG3-209ENST00000586435 GAGE5Q13069 117 aa7.82□□□□□ -1.16
LIG3-209ENST00000586435 GAGE13Q4V321 117 aa7.82□□□□□ -1.16
LIG3-209ENST00000586435 DAZ4Q86SG3 579 aaKnown RBP7.82□□□□□ -1.16
LIG3-209ENST00000586435 HSD17B11Q8NBQ5 300 aa7.82□□□□□ -1.16
LIG3-209ENST00000586435 RMI2Q96E14 147 aa7.82□□□□□ -1.16
LIG3-209ENST00000586435 DAZ3Q9NR90 486 aaKnown RBP7.82□□□□□ -1.16
LIG3-209ENST00000586435 IL36BQ9NZH7 164 aa7.82□□□□□ -1.16
LIG3-209ENST00000586435 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.81□□□□□ -1.16
LIG3-209ENST00000586435 A0A1W2PRE2 83 aa7.81□□□□□ -1.16
LIG3-209ENST00000586435 RHODO00212 210 aa7.81□□□□□ -1.16
LIG3-209ENST00000586435 LECT2O14960 151 aa7.81□□□□□ -1.16
LIG3-209ENST00000586435 SEC11BP0C7V7 166 aa7.81□□□□□ -1.16
LIG3-209ENST00000586435 S100A4P26447 101 aaKnown RBP7.81□□□□□ -1.16
LIG3-209ENST00000586435 ATP6V0CP27449 155 aa7.81□□□□□ -1.16
LIG3-209ENST00000586435 ASIPP42127 132 aa7.81□□□□□ -1.16
LIG3-209ENST00000586435 DEFA1P59665 94 aa7.81□□□□□ -1.16
LIG3-209ENST00000586435 DEFA3P59666 94 aa7.81□□□□□ -1.16
LIG3-209ENST00000586435 FABP5P3A8MUU1 101 aa7.8□□□□□ -1.16
LIG3-209ENST00000586435 LGALSLQ3ZCW2 172 aaPredicted RBP7.8□□□□□ -1.16
LIG3-209ENST00000586435 DNLZQ5SXM8 178 aa7.8□□□□□ -1.16
LIG3-209ENST00000586435 SCXQ7RTU7 201 aa7.8□□□□□ -1.16
LIG3-209ENST00000586435 NIT1Q86X76 327 aa7.8□□□□□ -1.16
LIG3-209ENST00000586435 Q8N976 141 aa7.8□□□□□ -1.16
LIG3-209ENST00000586435 OR2T35Q8NGX2 323 aa7.8□□□□□ -1.16
LIG3-209ENST00000586435 AQP10Q96PS8 301 aa7.8□□□□□ -1.16
LIG3-209ENST00000586435 CHCHD7Q9BUK0 85 aa7.8□□□□□ -1.16
LIG3-209ENST00000586435 TNFSF18Q9UNG2 199 aa7.8□□□□□ -1.16
LIG3-209ENST00000586435 ARL2-SNX15V9GYD0 113 aa7.8□□□□□ -1.16
LIG3-209ENST00000586435 C14orf178Q8N769 122 aaPredicted RBP7.79□□□□□ -1.16
LIG3-209ENST00000586435 BAALCQ8WXS3 180 aa7.79□□□□□ -1.16
LIG3-209ENST00000586435 SAMD10Q9BYL1 202 aa7.79□□□□□ -1.16
LIG3-209ENST00000586435 ACTR3CQ9C0K3 210 aaPredicted RBP7.79□□□□□ -1.16
LIG3-209ENST00000586435 JPT2Q9H910 190 aa7.79□□□□□ -1.16
LIG3-209ENST00000586435 Q9UF83 564 aa7.79□□□□□ -1.16
LIG3-209ENST00000586435 URGCP-MRPS24S4R325 110 aa7.79□□□□□ -1.16
LIG3-209ENST00000586435 RNF222A6NCQ9 220 aa7.78□□□□□ -1.16
LIG3-209ENST00000586435 H3BVH4 76 aa7.78□□□□□ -1.16
LIG3-209ENST00000586435 KRTAP10-4P60372 401 aaPredicted RBP7.78□□□□□ -1.16
LIG3-209ENST00000586435 DMRTA1Q5VZB9 504 aa7.78□□□□□ -1.16
LIG3-209ENST00000586435 ATRAIDQ6UW56 229 aa7.78□□□□□ -1.16
LIG3-209ENST00000586435 COX8CQ7Z4L0 72 aa7.78□□□□□ -1.16
LIG3-209ENST00000586435 Q86TA4 180 aa7.78□□□□□ -1.16
LIG3-209ENST00000586435 SYT8Q8NBV8 401 aa7.78□□□□□ -1.16
LIG3-209ENST00000586435 CHAC1Q9BUX1 264 aa7.78□□□□□ -1.16
LIG3-209ENST00000586435 IGKV2D-24A0A075B6R9 120 aa7.77□□□□□ -1.17
LIG3-209ENST00000586435 TRAV34A0A0B4J273 112 aa7.77□□□□□ -1.17
LIG3-209ENST00000586435 RBFOX3A6NFN3 312 aa7.77□□□□□ -1.17
LIG3-209ENST00000586435 B4DEV8 164 aa7.77□□□□□ -1.17
LIG3-209ENST00000586435 OR11H4Q8NGC9 324 aa7.77□□□□□ -1.17
LIG3-209ENST00000586435 NKX6-2Q9C056 277 aaPredicted RBP7.77□□□□□ -1.17
LIG3-209ENST00000586435 TRBV10-1A0A0K0K1A3 114 aa7.76□□□□□ -1.17
LIG3-209ENST00000586435 CTXND1A0A1B0GTU2 59 aa7.76□□□□□ -1.17
LIG3-209ENST00000586435 KRBOX1C9JBD0 128 aa7.76□□□□□ -1.17
LIG3-209ENST00000586435 PEX7O00628 323 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms