RNA–Protein interactions for RNA: ENST00000579727.5

RARA-209, Transcript of retinoic acid receptor alpha, human

TSL 4

Gene RARA, Length 564 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RARA-209	ENST00000579727	ZNF506	Q5JVG8	444 aa		11.37	□□□□□ -0.59
RARA-209	ENST00000579727	OR4C5	Q8NGB2	326 aa		11.37	□□□□□ -0.59
RARA-209	ENST00000579727	MED9	Q9NWA0	146 aa		11.37	□□□□□ -0.59
RARA-209	ENST00000579727	VAX2	Q9UIW0	290 aa		11.37	□□□□□ -0.59
RARA-209	ENST00000579727	DNAH6	Q9C0G6	4158 aa		11.36	□□□□□ -0.59
RARA-209	ENST00000579727	TRAV4	A0A0B4J268	109 aa		11.36	□□□□□ -0.59
RARA-209	ENST00000579727	PAX4	O43316	350 aa		11.36	□□□□□ -0.59
RARA-209	ENST00000579727	PCNP	Q8WW12	178 aa	Known RBP	11.36	□□□□□ -0.59
RARA-209	ENST00000579727	TXNDC17	Q9BRA2	123 aa		11.36	□□□□□ -0.59
RARA-209	ENST00000579727	MLST8	Q9BVC4	326 aa		11.36	□□□□□ -0.59
RARA-209	ENST00000579727	IGHV3-73	A0A0B4J1V6	119 aa		11.35	□□□□□ -0.59
RARA-209	ENST00000579727		M0R2N4	97 aa		11.35	□□□□□ -0.59
RARA-209	ENST00000579727	PDE6D	O43924	150 aa		11.35	□□□□□ -0.59
RARA-209	ENST00000579727	CRYBA4	P53673	196 aa		11.35	□□□□□ -0.59
RARA-209	ENST00000579727	LINC01559	Q495D7	138 aa		11.35	□□□□□ -0.59
RARA-209	ENST00000579727	PRO0255	Q9UI72	69 aa		11.35	□□□□□ -0.59
RARA-209	ENST00000579727	HHLA3	Q9XRX5	114 aa		11.35	□□□□□ -0.59
RARA-209	ENST00000579727	LINC00588	Q9Y4M8	146 aa		11.35	□□□□□ -0.59
RARA-209	ENST00000579727		A0A096LPF7	62 aa		11.34	□□□□□ -0.59
RARA-209	ENST00000579727	ARMS2	P0C7Q2	107 aa		11.34	□□□□□ -0.59
RARA-209	ENST00000579727	MGST1	P10620	155 aa	Known RBP	11.34	□□□□□ -0.59
RARA-209	ENST00000579727	RNF212	Q495C1	297 aa		11.34	□□□□□ -0.59
RARA-209	ENST00000579727	ZNF575	Q86XF7	245 aa		11.34	□□□□□ -0.59
RARA-209	ENST00000579727	TRBV20OR9-2	A0A075B6H5	130 aa		11.33	□□□□□ -0.6
RARA-209	ENST00000579727		H3BNG1	76 aa		11.33	□□□□□ -0.6
RARA-209	ENST00000579727	IGLV2-8	P01709	118 aa		11.33	□□□□□ -0.6
RARA-209	ENST00000579727	GNG4	P50150	75 aa		11.33	□□□□□ -0.6
RARA-209	ENST00000579727	CCL18	P55774	89 aa		11.33	□□□□□ -0.6
RARA-209	ENST00000579727	CFAP126	Q5VTH2	177 aa		11.33	□□□□□ -0.6
RARA-209	ENST00000579727	IL36B	Q9NZH7	164 aa		11.33	□□□□□ -0.6
RARA-209	ENST00000579727	ICOS	Q9Y6W8	199 aa		11.33	□□□□□ -0.6
RARA-209	ENST00000579727	LOC100131303	A0A0U1RQF7	123 aa		11.32	□□□□□ -0.6
RARA-209	ENST00000579727	RBFOX3	A6NFN3	312 aa		11.32	□□□□□ -0.6
RARA-209	ENST00000579727	RS1	O15537	224 aa		11.32	□□□□□ -0.6
RARA-209	ENST00000579727	TOR2A	Q5JU69	321 aa		11.32	□□□□□ -0.6
RARA-209	ENST00000579727	LYPD6B	Q8NI32	183 aa		11.32	□□□□□ -0.6
RARA-209	ENST00000579727	JPT2	Q9H910	190 aa		11.32	□□□□□ -0.6
RARA-209	ENST00000579727	SLA	Q13239	276 aa		11.31	□□□□□ -0.6
RARA-209	ENST00000579727	ESRG	Q1W209	222 aa		11.31	□□□□□ -0.6
RARA-209	ENST00000579727		M0R381	172 aa		11.3	□□□□□ -0.6
RARA-209	ENST00000579727	GYPE	P15421	78 aa		11.3	□□□□□ -0.6
RARA-209	ENST00000579727	TAGLN2	P37802	199 aa	Known RBP	11.3	□□□□□ -0.6
RARA-209	ENST00000579727	CEBPG	P53567	150 aa		11.3	□□□□□ -0.6
RARA-209	ENST00000579727	DNLZ	Q5SXM8	178 aa		11.3	□□□□□ -0.6
RARA-209	ENST00000579727	DMRTA1	Q5VZB9	504 aa		11.3	□□□□□ -0.6
RARA-209	ENST00000579727	PHLDA3	Q9Y5J5	127 aa		11.3	□□□□□ -0.6
RARA-209	ENST00000579727	MUC21	A0A0G2JKD1	596 aa		11.29	□□□□□ -0.6
RARA-209	ENST00000579727	MUC21	A0A140T8X8	626 aa		11.29	□□□□□ -0.6
RARA-209	ENST00000579727		K7EQD1	137 aa		11.29	□□□□□ -0.6
RARA-209	ENST00000579727	GATA1	P15976	413 aa	Predicted RBP	11.29	□□□□□ -0.6
RARA-209	ENST00000579727	TEX261	Q6UWH6	196 aa		11.29	□□□□□ -0.6
RARA-209	ENST00000579727	ZNRF2	Q8NHG8	242 aa		11.29	□□□□□ -0.6
RARA-209	ENST00000579727	PTH2	Q96A98	100 aa		11.29	□□□□□ -0.6
RARA-209	ENST00000579727	SAMD10	Q9BYL1	202 aa		11.29	□□□□□ -0.6
RARA-209	ENST00000579727	EIF5A2	Q9GZV4	153 aa	Known RBP	11.29	□□□□□ -0.6
RARA-209	ENST00000579727	PARL	Q9H300	379 aa		11.29	□□□□□ -0.6
RARA-209	ENST00000579727	DNAH2	Q9P225	4427 aa		11.28	□□□□□ -0.6
RARA-209	ENST00000579727	ABCA13	Q86UQ4	5058 aa		11.28	□□□□□ -0.6
RARA-209	ENST00000579727	GZMB	P10144	247 aa		11.28	□□□□□ -0.6
RARA-209	ENST00000579727	SYT8	Q8NBV8	401 aa		11.28	□□□□□ -0.6
RARA-209	ENST00000579727	SCRT2	Q9NQ03	307 aa		11.28	□□□□□ -0.6
RARA-209	ENST00000579727	SRI	P30626	198 aa		11.27	□□□□□ -0.61
RARA-209	ENST00000579727	SST	P61278	116 aa		11.27	□□□□□ -0.61
RARA-209	ENST00000579727	MRPL23	Q16540	153 aa	Known RBP	11.27	□□□□□ -0.61
RARA-209	ENST00000579727	SLC25A29	Q8N8R3	303 aa		11.27	□□□□□ -0.61
RARA-209	ENST00000579727	OR10AG1	Q8NH19	301 aa		11.27	□□□□□ -0.61
RARA-209	ENST00000579727	DAZAP1	Q96EP5	407 aa	Known RBP	11.27	□□□□□ -0.61
RARA-209	ENST00000579727	FAM210A	Q96ND0	272 aa		11.27	□□□□□ -0.61
RARA-209	ENST00000579727		A0A087WWL8	130 aa		11.26	□□□□□ -0.61
RARA-209	ENST00000579727	C19orf71	A6NCJ1	209 aa		11.26	□□□□□ -0.61
RARA-209	ENST00000579727		A8MWV9	139 aa		11.26	□□□□□ -0.61
RARA-209	ENST00000579727	FAM3B	P58499	235 aa	Predicted RBP	11.26	□□□□□ -0.61
RARA-209	ENST00000579727	FAM74A4	Q5TZK3	123 aa		11.26	□□□□□ -0.61
RARA-209	ENST00000579727		Q6ZSN1	163 aa		11.26	□□□□□ -0.61
RARA-209	ENST00000579727	ZFP82	Q8N141	532 aa		11.26	□□□□□ -0.61
RARA-209	ENST00000579727	OR2D3	Q8NGH3	330 aa		11.26	□□□□□ -0.61
RARA-209	ENST00000579727	MRPS16	Q9Y3D3	137 aa	Known RBP	11.26	□□□□□ -0.61
RARA-209	ENST00000579727	TMEM250	H0YL14	139 aa		11.25	□□□□□ -0.61
RARA-209	ENST00000579727		K7EN84	100 aa		11.25	□□□□□ -0.61
RARA-209	ENST00000579727	NEGR1	Q7Z3B1	354 aa		11.25	□□□□□ -0.61
RARA-209	ENST00000579727	SMIM12	Q96EX1	92 aa		11.25	□□□□□ -0.61
RARA-209	ENST00000579727	TPPP3	Q9BW30	176 aa		11.25	□□□□□ -0.61
RARA-209	ENST00000579727		P01737	135 aa		11.24	□□□□□ -0.61
RARA-209	ENST00000579727	CXCL1	P09341	107 aa		11.24	□□□□□ -0.61
RARA-209	ENST00000579727	MED14OS	P0DP75	135 aa		11.24	□□□□□ -0.61
RARA-209	ENST00000579727	RHOH	Q15669	191 aa		11.24	□□□□□ -0.61
RARA-209	ENST00000579727	UFSP1	Q6NVU6	142 aa		11.24	□□□□□ -0.61
RARA-209	ENST00000579727	LYPD5	Q6UWN5	251 aa		11.24	□□□□□ -0.61
RARA-209	ENST00000579727		Q6ZR54	194 aa		11.24	□□□□□ -0.61
RARA-209	ENST00000579727	OCC1	Q8TAD7	63 aa		11.24	□□□□□ -0.61
RARA-209	ENST00000579727	SFRP2	Q96HF1	295 aa		11.24	□□□□□ -0.61
RARA-209	ENST00000579727	RNASE7	Q9H1E1	156 aa	Known RBP	11.24	□□□□□ -0.61
RARA-209	ENST00000579727	NBDY	A0A0U1RRE5	68 aa		11.23	□□□□□ -0.61
RARA-209	ENST00000579727	TRBV6-4	A0A1B0GX49	114 aa		11.23	□□□□□ -0.61
RARA-209	ENST00000579727	SNAI2	O43623	268 aa		11.23	□□□□□ -0.61
RARA-209	ENST00000579727	PIK3CD-AS1	Q5SR53	167 aa		11.23	□□□□□ -0.61
RARA-209	ENST00000579727	C14orf178	Q8N769	122 aa	Predicted RBP	11.23	□□□□□ -0.61
RARA-209	ENST00000579727	NUDT10	Q8NFP7	164 aa		11.23	□□□□□ -0.61
RARA-209	ENST00000579727	NUDT11	Q96G61	164 aa		11.23	□□□□□ -0.61
RARA-209	ENST00000579727	PRADC1	Q9BSG0	188 aa		11.23	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms