RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 RPL35P42766 123 aaKnown RBP13.51□□□□□ -0.25
SS18-209ENST00000578595 ESRGQ1W209 222 aa13.51□□□□□ -0.25
SS18-209ENST00000578595 ZNF674Q2M3X9 581 aa13.51□□□□□ -0.25
SS18-209ENST00000578595 ZNRF2Q8NHG8 242 aa13.51□□□□□ -0.25
SS18-209ENST00000578595 TXNDC17Q9BRA2 123 aa13.51□□□□□ -0.25
SS18-209ENST00000578595 DERL1Q9BUN8 251 aa13.51□□□□□ -0.25
SS18-209ENST00000578595 BCL2P10415 239 aa13.5□□□□□ -0.25
SS18-209ENST00000578595 MEF2BQ02080 365 aaPredicted RBP13.5□□□□□ -0.25
SS18-209ENST00000578595 COX8CQ7Z4L0 72 aa13.5□□□□□ -0.25
SS18-209ENST00000578595 SYT8Q8NBV8 401 aa13.5□□□□□ -0.25
SS18-209ENST00000578595 MGST1P10620 155 aaKnown RBP13.49□□□□□ -0.25
SS18-209ENST00000578595 SOHLH1Q5JUK2 328 aa13.49□□□□□ -0.25
SS18-209ENST00000578595 CFAP126Q5VTH2 177 aa13.49□□□□□ -0.25
SS18-209ENST00000578595 MED9Q9NWA0 146 aa13.49□□□□□ -0.25
SS18-209ENST00000578595 MRPS16Q9Y3D3 137 aaKnown RBP13.49□□□□□ -0.25
SS18-209ENST00000578595 BOLA1Q9Y3E2 137 aa13.49□□□□□ -0.25
SS18-209ENST00000578595 RS1O15537 224 aa13.48□□□□□ -0.25
SS18-209ENST00000578595 PDE6DO43924 150 aa13.48□□□□□ -0.25
SS18-209ENST00000578595 ARMS2P0C7Q2 107 aa13.48□□□□□ -0.25
SS18-209ENST00000578595 BLOC1S1P78537 153 aa13.48□□□□□ -0.25
SS18-209ENST00000578595 LINC01559Q495D7 138 aa13.48□□□□□ -0.25
SS18-209ENST00000578595 CENPWQ5EE01 88 aa13.48□□□□□ -0.25
SS18-209ENST00000578595 NEGR1Q7Z3B1 354 aa13.48□□□□□ -0.25
SS18-209ENST00000578595 C11orf52Q96A22 123 aa13.48□□□□□ -0.25
SS18-209ENST00000578595 Q9H8V8 135 aa13.48□□□□□ -0.25
SS18-209ENST00000578595 IL36BQ9NZH7 164 aa13.48□□□□□ -0.25
SS18-209ENST00000578595 VAX2Q9UIW0 290 aa13.48□□□□□ -0.25
SS18-209ENST00000578595 PHLDA3Q9Y5J5 127 aa13.48□□□□□ -0.25
SS18-209ENST00000578595 NBDYA0A0U1RRE5 68 aa13.47□□□□□ -0.25
SS18-209ENST00000578595 K7EQD1 137 aa13.47□□□□□ -0.25
SS18-209ENST00000578595 M0R381 172 aa13.47□□□□□ -0.25
SS18-209ENST00000578595 RPL19P84098 196 aaKnown RBP13.47□□□□□ -0.25
SS18-209ENST00000578595 DNAH10Q8IVF4 4471 aa13.47□□□□□ -0.25
SS18-209ENST00000578595 LOC100131303A0A0U1RQF7 123 aa13.46□□□□□ -0.25
SS18-209ENST00000578595 A8MWV9 139 aa13.46□□□□□ -0.25
SS18-209ENST00000578595 GATA1P15976 413 aaPredicted RBP13.46□□□□□ -0.25
SS18-209ENST00000578595 GNG4P50150 75 aa13.46□□□□□ -0.25
SS18-209ENST00000578595 C1orf134Q5TEV5 83 aa13.46□□□□□ -0.25
SS18-209ENST00000578595 Q6ZR54 194 aa13.46□□□□□ -0.25
SS18-209ENST00000578595 PRADC1Q9BSG0 188 aa13.46□□□□□ -0.25
SS18-209ENST00000578595 EPPK1P58107 5090 aaKnown RBP13.45□□□□□ -0.26
SS18-209ENST00000578595 CIDEAO60543 219 aa13.45□□□□□ -0.26
SS18-209ENST00000578595 TAGLN2P37802 199 aaKnown RBP13.45□□□□□ -0.26
SS18-209ENST00000578595 FAM74A4Q5TZK3 123 aa13.45□□□□□ -0.26
SS18-209ENST00000578595 LINC00336Q6ZUF6 198 aa13.45□□□□□ -0.26
SS18-209ENST00000578595 RAB19A4D1S5 217 aa13.44□□□□□ -0.26
SS18-209ENST00000578595 NXPH4O95158 308 aa13.44□□□□□ -0.26
SS18-209ENST00000578595 RHOHQ15669 191 aa13.44□□□□□ -0.26
SS18-209ENST00000578595 TTC32Q5I0X7 151 aa13.44□□□□□ -0.26
SS18-209ENST00000578595 PTH2Q96A98 100 aa13.44□□□□□ -0.26
SS18-209ENST00000578595 DAZAP1Q96EP5 407 aaKnown RBP13.44□□□□□ -0.26
SS18-209ENST00000578595 UPK3BQ9BT76 320 aa13.44□□□□□ -0.26
SS18-209ENST00000578595 MLST8Q9BVC4 326 aa13.44□□□□□ -0.26
SS18-209ENST00000578595 PARLQ9H300 379 aa13.44□□□□□ -0.26
SS18-209ENST00000578595 JPT2Q9H910 190 aa13.44□□□□□ -0.26
SS18-209ENST00000578595 PRSS29PA6NIE9 313 aa13.43□□□□□ -0.26
SS18-209ENST00000578595 DNLZQ5SXM8 178 aa13.43□□□□□ -0.26
SS18-209ENST00000578595 DMRTA1Q5VZB9 504 aa13.43□□□□□ -0.26
SS18-209ENST00000578595 SLC25A29Q8N8R3 303 aa13.43□□□□□ -0.26
SS18-209ENST00000578595 RTL8CO15255 209 aa13.42□□□□□ -0.26
SS18-209ENST00000578595 CEBPGP53567 150 aa13.42□□□□□ -0.26
SS18-209ENST00000578595 LYPD5Q6UWN5 251 aa13.42□□□□□ -0.26
SS18-209ENST00000578595 ZFP82Q8N141 532 aa13.42□□□□□ -0.26
SS18-209ENST00000578595 FRAS1Q86XX4 4008 aa13.42□□□□□ -0.26
SS18-209ENST00000578595 SIVA1O15304 175 aa13.41□□□□□ -0.26
SS18-209ENST00000578595 SSTP61278 116 aa13.41□□□□□ -0.26
SS18-209ENST00000578595 PIK3CD-AS1Q5SR53 167 aa13.41□□□□□ -0.26
SS18-209ENST00000578595 A0A087WWL8 130 aa13.4□□□□□ -0.26
SS18-209ENST00000578595 TRBV6-4A0A1B0GX49 114 aa13.4□□□□□ -0.26
SS18-209ENST00000578595 RBFOX3A6NFN3 312 aa13.4□□□□□ -0.26
SS18-209ENST00000578595 RHODO00212 210 aa13.4□□□□□ -0.26
SS18-209ENST00000578595 SH2D6Q7Z4S9 175 aa13.4□□□□□ -0.26
SS18-209ENST00000578595 C6orf223Q8N319 242 aa13.4□□□□□ -0.26
SS18-209ENST00000578595 TPPP3Q9BW30 176 aa13.4□□□□□ -0.26
SS18-209ENST00000578595 SAMD10Q9BYL1 202 aa13.4□□□□□ -0.26
SS18-209ENST00000578595 MUC21A0A0G2JKD1 596 aa13.39□□□□□ -0.27
SS18-209ENST00000578595 MUC21A0A140T8X8 626 aa13.39□□□□□ -0.27
SS18-209ENST00000578595 TOR2AQ5JU69 321 aa13.39□□□□□ -0.27
SS18-209ENST00000578595 ZFP2Q6ZN57 461 aa13.39□□□□□ -0.27
SS18-209ENST00000578595 OR2D3Q8NGH3 330 aa13.39□□□□□ -0.27
SS18-209ENST00000578595 MED14OSP0DP75 135 aa13.38□□□□□ -0.27
SS18-209ENST00000578595 SPANXN1Q5VSR9 72 aa13.38□□□□□ -0.27
SS18-209ENST00000578595 OR10AG1Q8NH19 301 aa13.38□□□□□ -0.27
SS18-209ENST00000578595 SMIM12Q96EX1 92 aa13.38□□□□□ -0.27
SS18-209ENST00000578595 EIF5A2Q9GZV4 153 aaKnown RBP13.38□□□□□ -0.27
SS18-209ENST00000578595 BIN3Q9NQY0 253 aa13.38□□□□□ -0.27
SS18-209ENST00000578595 GAGE12JA6NER3 117 aa13.37□□□□□ -0.27
SS18-209ENST00000578595 IGLV2-8P01709 118 aa13.37□□□□□ -0.27
SS18-209ENST00000578595 P01737 135 aa13.37□□□□□ -0.27
SS18-209ENST00000578595 CXCL1P09341 107 aa13.37□□□□□ -0.27
SS18-209ENST00000578595 GAGE1Q13065 139 aa13.37□□□□□ -0.27
SS18-209ENST00000578595 GAGE4Q13068 117 aa13.37□□□□□ -0.27
SS18-209ENST00000578595 GAGE5Q13069 117 aa13.37□□□□□ -0.27
SS18-209ENST00000578595 GAGE13Q4V321 117 aa13.37□□□□□ -0.27
SS18-209ENST00000578595 SFRP2Q96HF1 295 aa13.37□□□□□ -0.27
SS18-209ENST00000578595 KRTAP1-5Q9BYS1 174 aa13.37□□□□□ -0.27
SS18-209ENST00000578595 SCRT2Q9NQ03 307 aa13.37□□□□□ -0.27
SS18-209ENST00000578595 TRBV20OR9-2A0A075B6H5 130 aa13.36□□□□□ -0.27
SS18-209ENST00000578595 GZMBP10144 247 aa13.36□□□□□ -0.27
SS18-209ENST00000578595 RPS20P60866 119 aaKnown RBP13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms