RNA–Protein interactions for RNA: ENST00000575513.1

CIITA-210, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 516 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-210ENST00000575513 RNASE3P12724 160 aaKnown RBP9.43□□□□□ -0.9
CIITA-210ENST00000575513 LINC01559Q495D7 138 aa9.43□□□□□ -0.9
CIITA-210ENST00000575513 ZNF876PQ49A33 203 aa9.43□□□□□ -0.9
CIITA-210ENST00000575513 CENPWQ5EE01 88 aa9.43□□□□□ -0.9
CIITA-210ENST00000575513 NHLRC2Q8NBF2 726 aa9.43□□□□□ -0.9
CIITA-210ENST00000575513 OR4C5Q8NGB2 326 aa9.43□□□□□ -0.9
CIITA-210ENST00000575513 ZNF479Q96JC4 524 aa9.43□□□□□ -0.9
CIITA-210ENST00000575513 EIF5A2Q9GZV4 153 aaKnown RBP9.43□□□□□ -0.9
CIITA-210ENST00000575513 TRBV20OR9-2A0A075B6H5 130 aa9.42□□□□□ -0.9
CIITA-210ENST00000575513 A0A096LPF7 62 aa9.42□□□□□ -0.9
CIITA-210ENST00000575513 TRGV4A0A0C4DH28 118 aa9.42□□□□□ -0.9
CIITA-210ENST00000575513 B4DEV8 164 aa9.42□□□□□ -0.9
CIITA-210ENST00000575513 KRBOX1C9JBD0 128 aa9.42□□□□□ -0.9
CIITA-210ENST00000575513 C9JCJ5 164 aa9.42□□□□□ -0.9
CIITA-210ENST00000575513 IGLV2-8P01709 118 aa9.42□□□□□ -0.9
CIITA-210ENST00000575513 GNG4P50150 75 aa9.42□□□□□ -0.9
CIITA-210ENST00000575513 Q6ZR54 194 aa9.42□□□□□ -0.9
CIITA-210ENST00000575513 ZNRF2Q8NHG8 242 aa9.42□□□□□ -0.9
CIITA-210ENST00000575513 PCNPQ8WW12 178 aaKnown RBP9.42□□□□□ -0.9
CIITA-210ENST00000575513 UPK3BQ9BT76 320 aa9.42□□□□□ -0.9
CIITA-210ENST00000575513 BIN3Q9NQY0 253 aa9.42□□□□□ -0.9
CIITA-210ENST00000575513 IL36BQ9NZH7 164 aa9.42□□□□□ -0.9
CIITA-210ENST00000575513 LINC00588Q9Y4M8 146 aa9.42□□□□□ -0.9
CIITA-210ENST00000575513 ICOSQ9Y6W8 199 aa9.42□□□□□ -0.9
CIITA-210ENST00000575513 SRP19P09132 144 aaKnown RBP9.41□□□□□ -0.9
CIITA-210ENST00000575513 SFTA3P0C7M3 94 aa9.41□□□□□ -0.9
CIITA-210ENST00000575513 S100A4P26447 101 aaKnown RBP9.41□□□□□ -0.9
CIITA-210ENST00000575513 ASIPP42127 132 aa9.41□□□□□ -0.9
CIITA-210ENST00000575513 MRPL23Q16540 153 aaKnown RBP9.41□□□□□ -0.9
CIITA-210ENST00000575513 ESRGQ1W209 222 aa9.41□□□□□ -0.9
CIITA-210ENST00000575513 RS1O15537 224 aa9.4□□□□□ -0.9
CIITA-210ENST00000575513 CXCL1P09341 107 aa9.4□□□□□ -0.9
CIITA-210ENST00000575513 RAB14P61106 215 aa9.4□□□□□ -0.9
CIITA-210ENST00000575513 IFITM2Q01629 132 aa9.4□□□□□ -0.9
CIITA-210ENST00000575513 CFAP126Q5VTH2 177 aa9.4□□□□□ -0.9
CIITA-210ENST00000575513 ZNF575Q86XF7 245 aa9.4□□□□□ -0.9
CIITA-210ENST00000575513 PARLQ9H300 379 aa9.4□□□□□ -0.9
CIITA-210ENST00000575513 SMDT1Q9H4I9 107 aa9.4□□□□□ -0.9
CIITA-210ENST00000575513 MRPS16Q9Y3D3 137 aaKnown RBP9.4□□□□□ -0.9
CIITA-210ENST00000575513 DNAH2Q9P225 4427 aa9.39□□□□□ -0.91
CIITA-210ENST00000575513 PGPEP1LA6NFU8 196 aa9.39□□□□□ -0.91
CIITA-210ENST00000575513 M0R036 132 aa9.39□□□□□ -0.91
CIITA-210ENST00000575513 LINC00336Q6ZUF6 198 aa9.39□□□□□ -0.91
CIITA-210ENST00000575513 Q9H8V8 135 aa9.39□□□□□ -0.91
CIITA-210ENST00000575513 LY96Q9Y6Y9 160 aa9.39□□□□□ -0.91
CIITA-210ENST00000575513 EPPK1P58107 5090 aaKnown RBP9.39□□□□□ -0.91
CIITA-210ENST00000575513 FRAS1Q86XX4 4008 aa9.38□□□□□ -0.91
CIITA-210ENST00000575513 C19orf71A6NCJ1 209 aa9.38□□□□□ -0.91
CIITA-210ENST00000575513 A8MWV9 139 aa9.38□□□□□ -0.91
CIITA-210ENST00000575513 MED14OSP0DP75 135 aa9.38□□□□□ -0.91
CIITA-210ENST00000575513 MGST1P10620 155 aaKnown RBP9.38□□□□□ -0.91
CIITA-210ENST00000575513 GATA1P15976 413 aaPredicted RBP9.38□□□□□ -0.91
CIITA-210ENST00000575513 PEA15Q15121 130 aa9.38□□□□□ -0.91
CIITA-210ENST00000575513 CLLU1Q5K131 121 aa9.38□□□□□ -0.91
CIITA-210ENST00000575513 PRR27Q6MZM9 219 aa9.38□□□□□ -0.91
CIITA-210ENST00000575513 ZFP2Q6ZN57 461 aa9.38□□□□□ -0.91
CIITA-210ENST00000575513 NEGR1Q7Z3B1 354 aa9.38□□□□□ -0.91
CIITA-210ENST00000575513 SH2D6Q7Z4S9 175 aa9.38□□□□□ -0.91
CIITA-210ENST00000575513 SCRT2Q9NQ03 307 aa9.38□□□□□ -0.91
CIITA-210ENST00000575513 IGLV2-18A0A075B6J9 118 aa9.37□□□□□ -0.91
CIITA-210ENST00000575513 NBDYA0A0U1RRE5 68 aa9.37□□□□□ -0.91
CIITA-210ENST00000575513 TRBV6-4A0A1B0GX49 114 aa9.37□□□□□ -0.91
CIITA-210ENST00000575513 K7EQD1 137 aa9.37□□□□□ -0.91
CIITA-210ENST00000575513 M0R2N4 97 aa9.37□□□□□ -0.91
CIITA-210ENST00000575513 ARMS2P0C7Q2 107 aa9.37□□□□□ -0.91
CIITA-210ENST00000575513 SYT8Q8NBV8 401 aa9.37□□□□□ -0.91
CIITA-210ENST00000575513 OCC1Q8TAD7 63 aa9.37□□□□□ -0.91
CIITA-210ENST00000575513 DAZAP1Q96EP5 407 aaKnown RBP9.37□□□□□ -0.91
CIITA-210ENST00000575513 A0A1W2PPQ1 181 aa9.36□□□□□ -0.91
CIITA-210ENST00000575513 GRIFINA4D1Z8 144 aa9.36□□□□□ -0.91
CIITA-210ENST00000575513 C9JQL5 133 aa9.36□□□□□ -0.91
CIITA-210ENST00000575513 GYPEP15421 78 aa9.36□□□□□ -0.91
CIITA-210ENST00000575513 BTF3P20290 206 aaKnown RBP9.36□□□□□ -0.91
CIITA-210ENST00000575513 SRIP30626 198 aa9.36□□□□□ -0.91
CIITA-210ENST00000575513 RPS20P60866 119 aaKnown RBP9.36□□□□□ -0.91
CIITA-210ENST00000575513 SOHLH1Q5JUK2 328 aa9.36□□□□□ -0.91
CIITA-210ENST00000575513 LYPD5Q6UWN5 251 aa9.36□□□□□ -0.91
CIITA-210ENST00000575513 SMIM7Q9BQ49 75 aa9.36□□□□□ -0.91
CIITA-210ENST00000575513 PHLDA3Q9Y5J5 127 aa9.36□□□□□ -0.91
CIITA-210ENST00000575513 NACAE9PAV3 2078 aa9.36□□□□□ -0.91
CIITA-210ENST00000575513 DNAH17Q9UFH2 4485 aa9.35□□□□□ -0.91
CIITA-210ENST00000575513 TMSB15BA0A087X1C1 80 aa9.35□□□□□ -0.91
CIITA-210ENST00000575513 ZNF727A8MUV8 499 aa9.35□□□□□ -0.91
CIITA-210ENST00000575513 H3BVH4 76 aa9.35□□□□□ -0.91
CIITA-210ENST00000575513 K7EN84 100 aa9.35□□□□□ -0.91
CIITA-210ENST00000575513 CEBPGP53567 150 aa9.35□□□□□ -0.91
CIITA-210ENST00000575513 RPL19P84098 196 aaKnown RBP9.35□□□□□ -0.91
CIITA-210ENST00000575513 SRSF3P84103 164 aaKnown RBP9.35□□□□□ -0.91
CIITA-210ENST00000575513 FAM74A3Q4VXF1 159 aa9.35□□□□□ -0.91
CIITA-210ENST00000575513 TTC32Q5I0X7 151 aa9.35□□□□□ -0.91
CIITA-210ENST00000575513 C1orf134Q5TEV5 83 aa9.35□□□□□ -0.91
CIITA-210ENST00000575513 DMRTA1Q5VZB9 504 aa9.35□□□□□ -0.91
CIITA-210ENST00000575513 SLC25A29Q8N8R3 303 aa9.35□□□□□ -0.91
CIITA-210ENST00000575513 PRADC1Q9BSG0 188 aa9.35□□□□□ -0.91
CIITA-210ENST00000575513 SSBP4Q9BWG4 385 aaPredicted RBP9.35□□□□□ -0.91
CIITA-210ENST00000575513 RTL8CO15255 209 aa9.34□□□□□ -0.91
CIITA-210ENST00000575513 SNAI2O43623 268 aa9.34□□□□□ -0.91
CIITA-210ENST00000575513 P01737 135 aa9.34□□□□□ -0.91
CIITA-210ENST00000575513 TIRAPP58753 221 aa9.34□□□□□ -0.91
CIITA-210ENST00000575513 RHOHQ15669 191 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms