RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 PKD1P98161 4303 aa6.33□□□□□ -1.4
CIITA-208ENST00000572665 IGKV2-40A0A087WW87 121 aaPredicted RBP6.32□□□□□ -1.4
CIITA-208ENST00000572665 IFNA5P01569 189 aa6.32□□□□□ -1.4
CIITA-208ENST00000572665 IGKV2D-40P01614 121 aaPredicted RBP6.32□□□□□ -1.4
CIITA-208ENST00000572665 EVI2AP22794 236 aa6.32□□□□□ -1.4
CIITA-208ENST00000572665 SRIP30626 198 aa6.32□□□□□ -1.4
CIITA-208ENST00000572665 CRYBA4P53673 196 aa6.32□□□□□ -1.4
CIITA-208ENST00000572665 KHDC3LQ587J8 217 aa6.32□□□□□ -1.4
CIITA-208ENST00000572665 FAM159AQ6UWV7 190 aa6.32□□□□□ -1.4
CIITA-208ENST00000572665 SH2D6Q7Z4S9 175 aa6.32□□□□□ -1.4
CIITA-208ENST00000572665 SMIM29Q86T20 159 aa6.32□□□□□ -1.4
CIITA-208ENST00000572665 ZFAND2AQ8N6M9 145 aa6.32□□□□□ -1.4
CIITA-208ENST00000572665 TXNDC17Q9BRA2 123 aa6.32□□□□□ -1.4
CIITA-208ENST00000572665 SPXQ9BT56 116 aa6.32□□□□□ -1.4
CIITA-208ENST00000572665 LY96Q9Y6Y9 160 aa6.32□□□□□ -1.4
CIITA-208ENST00000572665 C9JCJ5 164 aa6.31□□□□□ -1.4
CIITA-208ENST00000572665 IGHV3-53P01767 116 aa6.31□□□□□ -1.4
CIITA-208ENST00000572665 OR10J4P0C629 311 aa6.31□□□□□ -1.4
CIITA-208ENST00000572665 ZNF266Q14584 549 aa6.31□□□□□ -1.4
CIITA-208ENST00000572665 LYPD5Q6UWN5 251 aa6.31□□□□□ -1.4
CIITA-208ENST00000572665 MIR17HGQ75NE6 70 aa6.31□□□□□ -1.4
CIITA-208ENST00000572665 IQCF2Q8IXL9 164 aa6.31□□□□□ -1.4
CIITA-208ENST00000572665 C10orf126Q8N4M7 172 aa6.31□□□□□ -1.4
CIITA-208ENST00000572665 CMTM2Q8TAZ6 248 aa6.31□□□□□ -1.4
CIITA-208ENST00000572665 SCGB1C1Q8TD33 95 aa6.31□□□□□ -1.4
CIITA-208ENST00000572665 FAM167A-AS1Q96KT0 104 aa6.31□□□□□ -1.4
CIITA-208ENST00000572665 ATP5SQ99766 215 aa6.31□□□□□ -1.4
CIITA-208ENST00000572665 WDR61Q9GZS3 305 aaKnown RBP6.31□□□□□ -1.4
CIITA-208ENST00000572665 MRPL16Q9NX20 251 aaKnown RBP6.31□□□□□ -1.4
CIITA-208ENST00000572665 MBD2Q9UBB5 411 aa6.31□□□□□ -1.4
CIITA-208ENST00000572665 EPM2AB3EWF7 344 aa6.3□□□□□ -1.4
CIITA-208ENST00000572665 G3V3Q6 166 aa6.3□□□□□ -1.4
CIITA-208ENST00000572665 RANP62826 216 aaKnown RBP6.3□□□□□ -1.4
CIITA-208ENST00000572665 UBE2L3P68036 154 aaKnown RBP6.3□□□□□ -1.4
CIITA-208ENST00000572665 Q5BKY6 102 aa6.3□□□□□ -1.4
CIITA-208ENST00000572665 Q6AWC8 147 aa6.3□□□□□ -1.4
CIITA-208ENST00000572665 ARL6IP6Q8N6S5 226 aa6.3□□□□□ -1.4
CIITA-208ENST00000572665 OR10G4Q8NGN3 311 aa6.3□□□□□ -1.4
CIITA-208ENST00000572665 RASL10AQ92737 203 aa6.3□□□□□ -1.4
CIITA-208ENST00000572665 FXYD5Q96DB9 178 aa6.3□□□□□ -1.4
CIITA-208ENST00000572665 TP53TG3Q9ULZ0 132 aa6.3□□□□□ -1.4
CIITA-208ENST00000572665 K7EQD1 137 aa6.29□□□□□ -1.4
CIITA-208ENST00000572665 CIDEAO60543 219 aa6.29□□□□□ -1.4
CIITA-208ENST00000572665 RPL12P30050 165 aaKnown RBP6.29□□□□□ -1.4
CIITA-208ENST00000572665 GCSAMLQ5JQS6 135 aa6.29□□□□□ -1.4
CIITA-208ENST00000572665 PHYHIPLQ96FC7 376 aa6.29□□□□□ -1.4
CIITA-208ENST00000572665 TRAV4A0A0B4J268 109 aa6.28□□□□□ -1.4
CIITA-208ENST00000572665 TRAV21A0A0B4J279 112 aa6.28□□□□□ -1.4
CIITA-208ENST00000572665 A0A1W2PPV4 95 aa6.28□□□□□ -1.4
CIITA-208ENST00000572665 TMEM183BQ1AE95 376 aa6.28□□□□□ -1.4
CIITA-208ENST00000572665 FFAR4Q5NUL3 377 aa6.28□□□□□ -1.4
CIITA-208ENST00000572665 MUC21Q5SSG8 566 aa6.28□□□□□ -1.4
CIITA-208ENST00000572665 PRR9Q5T870 116 aa6.28□□□□□ -1.4
CIITA-208ENST00000572665 Q6ZRN7 208 aaPredicted RBP6.28□□□□□ -1.4
CIITA-208ENST00000572665 TMEM183AQ8IXX5 376 aa6.28□□□□□ -1.4
CIITA-208ENST00000572665 OR4C5Q8NGB2 326 aa6.28□□□□□ -1.4
CIITA-208ENST00000572665 OR2T35Q8NGX2 323 aa6.28□□□□□ -1.4
CIITA-208ENST00000572665 Q8TAT8 98 aa6.28□□□□□ -1.4
CIITA-208ENST00000572665 FRZBQ92765 325 aa6.28□□□□□ -1.4
CIITA-208ENST00000572665 KCNS1Q96KK3 526 aa6.28□□□□□ -1.4
CIITA-208ENST00000572665 AQP10Q96PS8 301 aa6.28□□□□□ -1.4
CIITA-208ENST00000572665 NDFIP1Q9BT67 221 aa6.28□□□□□ -1.4
CIITA-208ENST00000572665 SH3BGRL3Q9H299 93 aa6.28□□□□□ -1.4
CIITA-208ENST00000572665 SDF2L1Q9HCN8 221 aa6.28□□□□□ -1.4
CIITA-208ENST00000572665 OTORQ9NRC9 128 aa6.28□□□□□ -1.4
CIITA-208ENST00000572665 HSPB11Q9Y547 144 aa6.28□□□□□ -1.4
CIITA-208ENST00000572665 DNAH11Q96DT5 4516 aa6.27□□□□□ -1.41
CIITA-208ENST00000572665 SERTM2A0A1B0GWG4 89 aa6.27□□□□□ -1.41
CIITA-208ENST00000572665 RNF222A6NCQ9 220 aa6.27□□□□□ -1.41
CIITA-208ENST00000572665 K7EQM0 130 aa6.27□□□□□ -1.41
CIITA-208ENST00000572665 M0R2P5 195 aa6.27□□□□□ -1.41
CIITA-208ENST00000572665 PSCAO43653 123 aa6.27□□□□□ -1.41
CIITA-208ENST00000572665 TSHBP01222 138 aa6.27□□□□□ -1.41
CIITA-208ENST00000572665 DNAH10OSP0CZ25 163 aa6.27□□□□□ -1.41
CIITA-208ENST00000572665 ACOT6Q3I5F7 207 aaPredicted RBP6.27□□□□□ -1.41
CIITA-208ENST00000572665 TDRG1Q3Y452 100 aa6.27□□□□□ -1.41
CIITA-208ENST00000572665 HYLS1Q96M11 299 aa6.27□□□□□ -1.41
CIITA-208ENST00000572665 MDFICQ9P1T7 246 aa6.27□□□□□ -1.41
CIITA-208ENST00000572665 NAGKQ9UJ70 344 aa6.27□□□□□ -1.41
CIITA-208ENST00000572665 TNFSF18Q9UNG2 199 aa6.27□□□□□ -1.41
CIITA-208ENST00000572665 A0A087WTM6 91 aa6.26□□□□□ -1.41
CIITA-208ENST00000572665 TRAV8-6A0A0B4J262 113 aa6.26□□□□□ -1.41
CIITA-208ENST00000572665 PGPA6NDG6 321 aa6.26□□□□□ -1.41
CIITA-208ENST00000572665 CRYGDP07320 174 aa6.26□□□□□ -1.41
CIITA-208ENST00000572665 PFN1P07737 140 aaKnown RBP6.26□□□□□ -1.41
CIITA-208ENST00000572665 SFTA3P0C7M3 94 aa6.26□□□□□ -1.41
CIITA-208ENST00000572665 PPT1P50897 306 aa6.26□□□□□ -1.41
CIITA-208ENST00000572665 NHLRC2Q8NBF2 726 aa6.26□□□□□ -1.41
CIITA-208ENST00000572665 OR11H4Q8NGC9 324 aa6.26□□□□□ -1.41
CIITA-208ENST00000572665 FBLL1A6NHQ2 334 aaKnown RBP6.25□□□□□ -1.41
CIITA-208ENST00000572665 ZFP69Q49AA0 526 aa6.25□□□□□ -1.41
CIITA-208ENST00000572665 WFDC10BQ8IUB3 73 aa6.25□□□□□ -1.41
CIITA-208ENST00000572665 PRADC1Q9BSG0 188 aa6.25□□□□□ -1.41
CIITA-208ENST00000572665 WFDC1Q9HC57 220 aa6.25□□□□□ -1.41
CIITA-208ENST00000572665 TREM1Q9NP99 234 aa6.25□□□□□ -1.41
CIITA-208ENST00000572665 RPH3ALQ9UNE2 315 aa6.25□□□□□ -1.41
CIITA-208ENST00000572665 RYR1P21817 5038 aa6.24□□□□□ -1.41
CIITA-208ENST00000572665 DYNC1H1Q14204 4646 aaKnown RBP6.24□□□□□ -1.41
CIITA-208ENST00000572665 FXYD6-FXYD2A0A087WZ82 144 aa6.24□□□□□ -1.41
CIITA-208ENST00000572665 IGHV3-38A0A0C4DH36 116 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms