RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 GAGE12IP0CL82 117 aa11.9□□□□□ -0.51
CIITA-204ENST00000570546 A0A1B0GXF2 115 aa11.89□□□□□ -0.51
CIITA-204ENST00000570546 C5orf56Q8N8D9 126 aa11.89□□□□□ -0.51
CIITA-204ENST00000570546 IGHV4-38-2P0DP08 117 aa11.89□□□□□ -0.51
CIITA-204ENST00000570546 IGHV4-61A0A0C4DH41 118 aa11.88□□□□□ -0.51
CIITA-204ENST00000570546 IGLL5B9A064 214 aa11.88□□□□□ -0.51
CIITA-204ENST00000570546 TAX1BP3O14907 124 aa11.88□□□□□ -0.51
CIITA-204ENST00000570546 ADORA2A-AS1P86434 159 aa11.88□□□□□ -0.51
CIITA-204ENST00000570546 MED13Q9UHV7 2174 aa11.88□□□□□ -0.51
CIITA-204ENST00000570546 HOXD3P31249 432 aaPredicted RBP11.88□□□□□ -0.51
CIITA-204ENST00000570546 C9orf47Q6ZRZ4 202 aa11.88□□□□□ -0.51
CIITA-204ENST00000570546 AJUBAQ96IF1 538 aa11.88□□□□□ -0.51
CIITA-204ENST00000570546 ZFP36P26651 326 aaKnown RBP11.88□□□□□ -0.51
CIITA-204ENST00000570546 HERVK_113P63121 156 aa11.88□□□□□ -0.51
CIITA-204ENST00000570546 CACNA1GO43497 2377 aa11.87□□□□□ -0.51
CIITA-204ENST00000570546 C2orf70A6NJV1 201 aa11.87□□□□□ -0.51
CIITA-204ENST00000570546 GAGE6Q13070 117 aa11.87□□□□□ -0.51
CIITA-204ENST00000570546 GDF5OSQ5U4N7 250 aa11.87□□□□□ -0.51
CIITA-204ENST00000570546 LINC00322Q6ZN03 302 aaPredicted RBP11.87□□□□□ -0.51
CIITA-204ENST00000570546 DNAJC30Q96LL9 226 aa11.87□□□□□ -0.51
CIITA-204ENST00000570546 EP400Q96L91 3159 aa11.87□□□□□ -0.51
CIITA-204ENST00000570546 PFN2P35080 140 aa11.87□□□□□ -0.51
CIITA-204ENST00000570546 FREM1Q5H8C1 2179 aa11.87□□□□□ -0.51
CIITA-204ENST00000570546 ZNF48Q96MX3 618 aaPredicted RBP11.87□□□□□ -0.51
CIITA-204ENST00000570546 VPREB3Q9UKI3 123 aa11.86□□□□□ -0.51
CIITA-204ENST00000570546 RNF114Q9Y508 228 aa11.86□□□□□ -0.51
CIITA-204ENST00000570546 ZFP2Q6ZN57 461 aa11.86□□□□□ -0.51
CIITA-204ENST00000570546 FANCD2OSQ96PS1 177 aa11.86□□□□□ -0.51
CIITA-204ENST00000570546 SRCAPQ6ZRS2 3230 aa11.86□□□□□ -0.51
CIITA-204ENST00000570546 BLCAPP62952 87 aa11.85□□□□□ -0.51
CIITA-204ENST00000570546 CFC1BP0CG36 223 aa11.85□□□□□ -0.51
CIITA-204ENST00000570546 CFC1P0CG37 223 aa11.85□□□□□ -0.51
CIITA-204ENST00000570546 CARD19Q96LW7 228 aa11.85□□□□□ -0.51
CIITA-204ENST00000570546 TTTY13Q9BZ97 58 aa11.85□□□□□ -0.51
CIITA-204ENST00000570546 FXYD2P54710 66 aa11.85□□□□□ -0.51
CIITA-204ENST00000570546 ARHGAP21Q5T5U3 1957 aa11.85□□□□□ -0.51
CIITA-204ENST00000570546 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.85□□□□□ -0.51
CIITA-204ENST00000570546 IGKV2-29A2NJV5 120 aaPredicted RBP11.85□□□□□ -0.51
CIITA-204ENST00000570546 C10orf142B7Z368 130 aa11.85□□□□□ -0.51
CIITA-204ENST00000570546 INAFM2P0DMQ5 153 aa11.85□□□□□ -0.51
CIITA-204ENST00000570546 HIGD1BQ9P298 99 aa11.85□□□□□ -0.51
CIITA-204ENST00000570546 TRAV12-1A0A0B4J245 112 aa11.84□□□□□ -0.51
CIITA-204ENST00000570546 WNK2Q9Y3S1 2297 aa11.84□□□□□ -0.51
CIITA-204ENST00000570546 RNASE8Q8TDE3 154 aaKnown RBP11.84□□□□□ -0.51
CIITA-204ENST00000570546 TNRC6AQ8NDV7 1962 aaKnown RBP11.84□□□□□ -0.51
CIITA-204ENST00000570546 TOMM6Q96B49 74 aa11.84□□□□□ -0.51
CIITA-204ENST00000570546 EDA2RQ9HAV5 297 aa11.83□□□□□ -0.52
CIITA-204ENST00000570546 U3KQE9 123 aa11.83□□□□□ -0.52
CIITA-204ENST00000570546 IGHV4-30-2A0A087WSY4 118 aa11.83□□□□□ -0.52
CIITA-204ENST00000570546 SIRPDQ9H106 197 aa11.83□□□□□ -0.52
CIITA-204ENST00000570546 DEFB136Q30KP8 78 aa11.83□□□□□ -0.52
CIITA-204ENST00000570546 ODF1Q14990 250 aa11.82□□□□□ -0.52
CIITA-204ENST00000570546 MLST8Q9BVC4 326 aa11.82□□□□□ -0.52
CIITA-204ENST00000570546 TEX48A0A1B0GUV7 120 aa11.82□□□□□ -0.52
CIITA-204ENST00000570546 Q8NA96 180 aa11.82□□□□□ -0.52
CIITA-204ENST00000570546 BAALCQ8WXS3 180 aa11.82□□□□□ -0.52
CIITA-204ENST00000570546 SH2D6Q7Z4S9 175 aa11.82□□□□□ -0.52
CIITA-204ENST00000570546 MBD6Q96DN6 1003 aa11.82□□□□□ -0.52
CIITA-204ENST00000570546 NTN5Q8WTR8 489 aaPredicted RBP11.81□□□□□ -0.52
CIITA-204ENST00000570546 PCNX2A6NKB5 2137 aa11.81□□□□□ -0.52
CIITA-204ENST00000570546 SOCS3O14543 225 aa11.81□□□□□ -0.52
CIITA-204ENST00000570546 LOXL1Q08397 574 aaPredicted RBP11.81□□□□□ -0.52
CIITA-204ENST00000570546 PCNX1Q96RV3 2341 aa11.81□□□□□ -0.52
CIITA-204ENST00000570546 C22orf34Q6ZV56 151 aa11.81□□□□□ -0.52
CIITA-204ENST00000570546 SPANXA1Q9NS26 97 aa11.81□□□□□ -0.52
CIITA-204ENST00000570546 TP53TG3Q9ULZ0 132 aa11.81□□□□□ -0.52
CIITA-204ENST00000570546 TRAV13-2A0A0B4J235 113 aa11.8□□□□□ -0.52
CIITA-204ENST00000570546 SLURP1P55000 103 aa11.8□□□□□ -0.52
CIITA-204ENST00000570546 MED14OSP0DP75 135 aa11.8□□□□□ -0.52
CIITA-204ENST00000570546 ZNF80P51504 273 aaPredicted RBP11.8□□□□□ -0.52
CIITA-204ENST00000570546 DAD1P61803 113 aa11.8□□□□□ -0.52
CIITA-204ENST00000570546 RPL39P62891 51 aaKnown RBP11.8□□□□□ -0.52
CIITA-204ENST00000570546 C10orf105Q8TEF2 133 aa11.8□□□□□ -0.52
CIITA-204ENST00000570546 ZGRF1Q86YA3 2104 aa11.8□□□□□ -0.52
CIITA-204ENST00000570546 SPATA12Q7Z6I5 190 aa11.79□□□□□ -0.52
CIITA-204ENST00000570546 APRG1Q8IVJ8 170 aa11.79□□□□□ -0.52
CIITA-204ENST00000570546 NOP10Q9NPE3 64 aaKnown RBP11.79□□□□□ -0.52
CIITA-204ENST00000570546 PRSS47A8MTI9 375 aa11.79□□□□□ -0.52
CIITA-204ENST00000570546 ODF3BA8MYP8 253 aa11.79□□□□□ -0.52
CIITA-204ENST00000570546 F5H768 121 aa11.79□□□□□ -0.52
CIITA-204ENST00000570546 DEFB1P60022 68 aa11.79□□□□□ -0.52
CIITA-204ENST00000570546 A0A0J9YXV3 536 aa11.79□□□□□ -0.52
CIITA-204ENST00000570546 IFITM1P13164 125 aa11.79□□□□□ -0.52
CIITA-204ENST00000570546 FBXL19-AS1Q494R0 122 aa11.79□□□□□ -0.52
CIITA-204ENST00000570546 Q9H8V8 135 aa11.79□□□□□ -0.52
CIITA-204ENST00000570546 DAZAP2Q15038 168 aaPredicted RBP11.79□□□□□ -0.52
CIITA-204ENST00000570546 DYSFO75923 2080 aa11.78□□□□□ -0.52
CIITA-204ENST00000570546 NXPH4O95158 308 aa11.78□□□□□ -0.52
CIITA-204ENST00000570546 Q8N1Y9 231 aa11.78□□□□□ -0.52
CIITA-204ENST00000570546 MUSTN1Q8IVN3 82 aa11.78□□□□□ -0.52
CIITA-204ENST00000570546 E9PLD3 99 aa11.78□□□□□ -0.52
CIITA-204ENST00000570546 CRYGBP07316 175 aa11.78□□□□□ -0.52
CIITA-204ENST00000570546 CHD3Q12873 2000 aaKnown RBP11.77□□□□□ -0.52
CIITA-204ENST00000570546 K7EMT4 169 aa11.77□□□□□ -0.53
CIITA-204ENST00000570546 UNQ9165/PRO28630Q6UXU0 137 aa11.77□□□□□ -0.53
CIITA-204ENST00000570546 CCDC140Q96MF4 163 aa11.77□□□□□ -0.53
CIITA-204ENST00000570546 SPAG8Q99932 426 aaPredicted RBP11.76□□□□□ -0.53
CIITA-204ENST00000570546 TRBV12-3P01733 135 aa11.76□□□□□ -0.53
CIITA-204ENST00000570546 C9orf153Q5TBE3 101 aa11.76□□□□□ -0.53
CIITA-204ENST00000570546 A4D1N5 150 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms