RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 Q6ZTC4 211 aa10.15□□□□□ -0.79
SHMT2-217ENST00000555116 DYNC2H1Q8NCM8 4307 aaKnown RBP10.14□□□□□ -0.79
SHMT2-217ENST00000555116 GPX1P07203 203 aa10.14□□□□□ -0.79
SHMT2-217ENST00000555116 SSTP61278 116 aa10.14□□□□□ -0.79
SHMT2-217ENST00000555116 LENEPQ9Y5L5 61 aa10.14□□□□□ -0.79
SHMT2-217ENST00000555116 HTN1P15515 57 aa10.13□□□□□ -0.79
SHMT2-217ENST00000555116 FAM231DQ6ZW35 169 aa10.13□□□□□ -0.79
SHMT2-217ENST00000555116 RNASE8Q8TDE3 154 aaKnown RBP10.13□□□□□ -0.79
SHMT2-217ENST00000555116 SMIM12Q96EX1 92 aa10.13□□□□□ -0.79
SHMT2-217ENST00000555116 FMC1Q96HJ9 113 aa10.13□□□□□ -0.79
SHMT2-217ENST00000555116 TRAPPC1Q9Y5R8 145 aa10.13□□□□□ -0.79
SHMT2-217ENST00000555116 KMT2CQ8NEZ4 4911 aaKnown RBP10.13□□□□□ -0.79
SHMT2-217ENST00000555116 TRAV8-1A0A0A6YYK1 113 aa10.13□□□□□ -0.79
SHMT2-217ENST00000555116 TEX48A0A1B0GUV7 120 aa10.13□□□□□ -0.79
SHMT2-217ENST00000555116 SERTM2A0A1B0GWG4 89 aa10.13□□□□□ -0.79
SHMT2-217ENST00000555116 Q6ZQT7 251 aa10.13□□□□□ -0.79
SHMT2-217ENST00000555116 ZNF493Q6ZR52 646 aa10.13□□□□□ -0.79
SHMT2-217ENST00000555116 TMEM263Q8WUH6 116 aaKnown RBP10.13□□□□□ -0.79
SHMT2-217ENST00000555116 C16orf74Q96GX8 76 aa10.13□□□□□ -0.79
SHMT2-217ENST00000555116 SGK494Q96LW2 274 aa10.13□□□□□ -0.79
SHMT2-217ENST00000555116 LINC00467Q9BRT7 94 aa10.13□□□□□ -0.79
SHMT2-217ENST00000555116 KLK5Q9Y337 293 aaPredicted RBP10.13□□□□□ -0.79
SHMT2-217ENST00000555116 SMIM27A0A1W2PRY6 76 aa10.12□□□□□ -0.79
SHMT2-217ENST00000555116 LTAP01374 205 aa10.12□□□□□ -0.79
SHMT2-217ENST00000555116 FABP4P15090 132 aa10.12□□□□□ -0.79
SHMT2-217ENST00000555116 MLST8Q9BVC4 326 aa10.12□□□□□ -0.79
SHMT2-217ENST00000555116 TRAV10A0A0B4J240 114 aa10.11□□□□□ -0.79
SHMT2-217ENST00000555116 COA6Q5JTJ3 125 aaKnown RBP10.11□□□□□ -0.79
SHMT2-217ENST00000555116 TMEM183AQ8IXX5 376 aa10.11□□□□□ -0.79
SHMT2-217ENST00000555116 NUDT10Q8NFP7 164 aa10.11□□□□□ -0.79
SHMT2-217ENST00000555116 NUDT11Q96G61 164 aa10.11□□□□□ -0.79
SHMT2-217ENST00000555116 PACRGQ96M98 296 aaPredicted RBP10.11□□□□□ -0.79
SHMT2-217ENST00000555116 XKRY2A2RUG3 117 aa10.1□□□□□ -0.79
SHMT2-217ENST00000555116 LYRM9A8MSI8 78 aa10.1□□□□□ -0.79
SHMT2-217ENST00000555116 IGLV2-11P01706 119 aa10.1□□□□□ -0.79
SHMT2-217ENST00000555116 PDZD11Q5EBL8 140 aa10.1□□□□□ -0.79
SHMT2-217ENST00000555116 LCE6AA0A183 80 aa10.1□□□□□ -0.79
SHMT2-217ENST00000555116 TCL1AP56279 114 aa10.1□□□□□ -0.79
SHMT2-217ENST00000555116 LBHQ53QV2 105 aaPredicted RBP10.1□□□□□ -0.79
SHMT2-217ENST00000555116 Q6AWC8 147 aa10.1□□□□□ -0.79
SHMT2-217ENST00000555116 PRR27Q6MZM9 219 aa10.1□□□□□ -0.79
SHMT2-217ENST00000555116 DEFB131BA0A096LNP1 70 aa10.09□□□□□ -0.79
SHMT2-217ENST00000555116 K7EQM0 130 aa10.09□□□□□ -0.79
SHMT2-217ENST00000555116 ANXA2RQ3ZCQ2 193 aa10.09□□□□□ -0.79
SHMT2-217ENST00000555116 Q86TA4 180 aa10.09□□□□□ -0.79
SHMT2-217ENST00000555116 PSG8Q9UQ74 426 aa10.09□□□□□ -0.79
SHMT2-217ENST00000555116 TIMM8BQ9Y5J9 83 aaPredicted RBP10.09□□□□□ -0.79
SHMT2-217ENST00000555116 PLECQ15149 4684 aaKnown RBP10.09□□□□□ -0.79
SHMT2-217ENST00000555116 IGHV1OR15-1A0A075B7D0 117 aa10.08□□□□□ -0.8
SHMT2-217ENST00000555116 TRBV6-1A0A0K0K1D8 114 aa10.08□□□□□ -0.8
SHMT2-217ENST00000555116 DDTP30046 118 aa10.08□□□□□ -0.8
SHMT2-217ENST00000555116 DAD1P61803 113 aa10.08□□□□□ -0.8
SHMT2-217ENST00000555116 RPL19P84098 196 aaKnown RBP10.08□□□□□ -0.8
SHMT2-217ENST00000555116 JOSD1Q15040 202 aaPredicted RBP10.08□□□□□ -0.8
SHMT2-217ENST00000555116 TMEM75Q8N9X5 138 aa10.08□□□□□ -0.8
SHMT2-217ENST00000555116 HIST1H2BLQ99880 126 aa10.08□□□□□ -0.8
SHMT2-217ENST00000555116 GNB1LQ9BYB4 327 aa10.08□□□□□ -0.8
SHMT2-217ENST00000555116 NOP10Q9NPE3 64 aaKnown RBP10.08□□□□□ -0.8
SHMT2-217ENST00000555116 LYSTQ99698 3801 aa10.08□□□□□ -0.8
SHMT2-217ENST00000555116 SPINK4O60575 86 aa10.08□□□□□ -0.8
SHMT2-217ENST00000555116 C11orf72Q8NBR9 251 aa10.08□□□□□ -0.8
SHMT2-217ENST00000555116 C14orf144Q96I85 54 aa10.08□□□□□ -0.8
SHMT2-217ENST00000555116 MRPL18Q9H0U6 180 aaKnown RBP10.08□□□□□ -0.8
SHMT2-217ENST00000555116 FBLL1A6NHQ2 334 aaKnown RBP10.07□□□□□ -0.8
SHMT2-217ENST00000555116 CBY3A6NI87 242 aa10.07□□□□□ -0.8
SHMT2-217ENST00000555116 PRNTQ86SH4 94 aa10.07□□□□□ -0.8
SHMT2-217ENST00000555116 LINC00612Q8N6U2 182 aa10.07□□□□□ -0.8
SHMT2-217ENST00000555116 TP53TG3Q9ULZ0 132 aa10.07□□□□□ -0.8
SHMT2-217ENST00000555116 ALMS1Q8TCU4 4167 aa10.07□□□□□ -0.8
SHMT2-217ENST00000555116 C19orf71A6NCJ1 209 aa10.06□□□□□ -0.8
SHMT2-217ENST00000555116 SNURFLB1AK76 121 aa10.06□□□□□ -0.8
SHMT2-217ENST00000555116 IGLL5B9A064 214 aa10.06□□□□□ -0.8
SHMT2-217ENST00000555116 DEFB130BP0DP73 79 aa10.06□□□□□ -0.8
SHMT2-217ENST00000555116 DEFB130AP0DP74 79 aa10.06□□□□□ -0.8
SHMT2-217ENST00000555116 COX19Q49B96 90 aa10.06□□□□□ -0.8
SHMT2-217ENST00000555116 WDR73Q6P4I2 378 aa10.06□□□□□ -0.8
SHMT2-217ENST00000555116 TSKUQ8WUA8 353 aa10.06□□□□□ -0.8
SHMT2-217ENST00000555116 C8orf49Q96NF6 230 aa10.06□□□□□ -0.8
SHMT2-217ENST00000555116 NDFIP1Q9BT67 221 aa10.06□□□□□ -0.8
SHMT2-217ENST00000555116 MT-ND6P03923 174 aa10.06□□□□□ -0.8
SHMT2-217ENST00000555116 DAZ2Q13117 558 aaKnown RBP10.06□□□□□ -0.8
SHMT2-217ENST00000555116 MUC21Q5SSG8 566 aa10.06□□□□□ -0.8
SHMT2-217ENST00000555116 CDPF1Q6NVV7 123 aa10.06□□□□□ -0.8
SHMT2-217ENST00000555116 TMEM136Q6ZRR5 245 aa10.06□□□□□ -0.8
SHMT2-217ENST00000555116 RPP21Q9H633 154 aaKnown RBP10.06□□□□□ -0.8
SHMT2-217ENST00000555116 APLNQ9ULZ1 77 aa10.06□□□□□ -0.8
SHMT2-217ENST00000555116 IGHV4-4A0A075B6R2 117 aa10.05□□□□□ -0.8
SHMT2-217ENST00000555116 ZNF80P51504 273 aaPredicted RBP10.05□□□□□ -0.8
SHMT2-217ENST00000555116 TCTAP57738 103 aa10.05□□□□□ -0.8
SHMT2-217ENST00000555116 MRPL54Q6P161 138 aaKnown RBP10.05□□□□□ -0.8
SHMT2-217ENST00000555116 NUP35Q8NFH5 326 aa10.05□□□□□ -0.8
SHMT2-217ENST00000555116 NAT8BQ9UHF3 227 aa10.05□□□□□ -0.8
SHMT2-217ENST00000555116 ZFP30Q9Y2G7 519 aa10.05□□□□□ -0.8
SHMT2-217ENST00000555116 MUC4Q99102 2169 aa10.05□□□□□ -0.8
SHMT2-217ENST00000555116 TRAV21A0A0B4J279 112 aa10.04□□□□□ -0.8
SHMT2-217ENST00000555116 P01737 135 aa10.04□□□□□ -0.8
SHMT2-217ENST00000555116 CT83Q5H943 113 aa10.04□□□□□ -0.8
SHMT2-217ENST00000555116 TMEM18Q96B42 140 aa10.04□□□□□ -0.8
SHMT2-217ENST00000555116 DAZAP1Q96EP5 407 aaKnown RBP10.04□□□□□ -0.8
SHMT2-217ENST00000555116 SACSQ9NZJ4 4579 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms