RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 ZNF670-ZNF695F2Z2N8 137 aa1.26□□□□□ -2.21
SCFD1-209ENST00000553280 M0R129 80 aa1.26□□□□□ -2.21
SCFD1-209ENST00000553280 PRB4P10163 310 aaPredicted RBP1.26□□□□□ -2.21
SCFD1-209ENST00000553280 C10orf99Q6UWK7 81 aa1.26□□□□□ -2.21
SCFD1-209ENST00000553280 FAM107BQ9H098 131 aa1.26□□□□□ -2.21
SCFD1-209ENST00000553280 CITO14578 2027 aa1.25□□□□□ -2.21
SCFD1-209ENST00000553280 CCKP06307 115 aa1.25□□□□□ -2.21
SCFD1-209ENST00000553280 PRB3Q04118 309 aaPredicted RBP1.25□□□□□ -2.21
SCFD1-209ENST00000553280 CCDC58Q4VC31 144 aa1.25□□□□□ -2.21
SCFD1-209ENST00000553280 LINC00208Q96KT6 92 aa1.25□□□□□ -2.21
SCFD1-209ENST00000553280 ERG28Q9UKR5 140 aa1.25□□□□□ -2.21
SCFD1-209ENST00000553280 ADGRB1O14514 1584 aa1.25□□□□□ -2.21
SCFD1-209ENST00000553280 EML5Q05BV3 1969 aa1.25□□□□□ -2.21
SCFD1-209ENST00000553280 TRPM7Q96QT4 1865 aa1.24□□□□□ -2.21
SCFD1-209ENST00000553280 BLMP54132 1417 aaPredicted RBP1.24□□□□□ -2.21
SCFD1-209ENST00000553280 VIRMAQ69YN4 1812 aaKnown RBP1.24□□□□□ -2.21
SCFD1-209ENST00000553280 PTPRMP28827 1452 aa1.24□□□□□ -2.21
SCFD1-209ENST00000553280 CCDC179H3BU77 68 aa1.23□□□□□ -2.21
SCFD1-209ENST00000553280 NDUFA2O43678 99 aa1.23□□□□□ -2.21
SCFD1-209ENST00000553280 SLC25A6P12236 298 aa1.23□□□□□ -2.21
SCFD1-209ENST00000553280 COPZ1P61923 177 aa1.23□□□□□ -2.21
SCFD1-209ENST00000553280 MIC13Q5XKP0 118 aa1.23□□□□□ -2.21
SCFD1-209ENST00000553280 VSTM2AQ8TAG5 236 aa1.23□□□□□ -2.21
SCFD1-209ENST00000553280 MYOM3Q5VTT5 1437 aa1.23□□□□□ -2.21
SCFD1-209ENST00000553280 CDK5RAP2Q96SN8 1893 aa1.22□□□□□ -2.21
SCFD1-209ENST00000553280 SARNPP82979 210 aaKnown RBP1.22□□□□□ -2.21
SCFD1-209ENST00000553280 Q6ZUT4 128 aa1.22□□□□□ -2.21
SCFD1-209ENST00000553280 NDUFA11Q86Y39 141 aa1.22□□□□□ -2.21
SCFD1-209ENST00000553280 TEX49A0A1B0GTD5 131 aa1.21□□□□□ -2.22
SCFD1-209ENST00000553280 PITX3O75364 302 aa1.21□□□□□ -2.22
SCFD1-209ENST00000553280 APOC1P02654 83 aa1.21□□□□□ -2.22
SCFD1-209ENST00000553280 TFF1P04155 84 aa1.21□□□□□ -2.22
SCFD1-209ENST00000553280 LINC01545Q5VT33 79 aa1.21□□□□□ -2.22
SCFD1-209ENST00000553280 SCIMPQ6UWF3 145 aa1.21□□□□□ -2.22
SCFD1-209ENST00000553280 PLAC4Q8WY50 150 aa1.21□□□□□ -2.22
SCFD1-209ENST00000553280 TSC22D3Q99576 134 aa1.21□□□□□ -2.22
SCFD1-209ENST00000553280 CASZ1Q86V15 1759 aa1.21□□□□□ -2.22
SCFD1-209ENST00000553280 FXYD1O00168 92 aa1.2□□□□□ -2.22
SCFD1-209ENST00000553280 TMEM191AQ9H0A3 160 aa1.2□□□□□ -2.22
SCFD1-209ENST00000553280 RREB1Q92766 1687 aa1.2□□□□□ -2.22
SCFD1-209ENST00000553280 GRIN2AQ12879 1464 aa1.19□□□□□ -2.22
SCFD1-209ENST00000553280 DLEC1Q9Y238 1755 aa1.19□□□□□ -2.22
SCFD1-209ENST00000553280 SPINT3P49223 89 aa1.19□□□□□ -2.22
SCFD1-209ENST00000553280 KLKP1Q107X0 134 aa1.19□□□□□ -2.22
SCFD1-209ENST00000553280 ZNF56Q15929 161 aa1.19□□□□□ -2.22
SCFD1-209ENST00000553280 SDF2Q99470 211 aa1.19□□□□□ -2.22
SCFD1-209ENST00000553280 TMEM2Q9UHN6 1383 aa1.19□□□□□ -2.22
SCFD1-209ENST00000553280 PYYP10082 97 aa1.18□□□□□ -2.22
SCFD1-209ENST00000553280 GUCA1AP43080 201 aaPredicted RBP1.18□□□□□ -2.22
SCFD1-209ENST00000553280 RRAS2P62070 204 aaPredicted RBP1.18□□□□□ -2.22
SCFD1-209ENST00000553280 SPCS2Q15005 226 aa1.18□□□□□ -2.22
SCFD1-209ENST00000553280 SPINK9Q5DT21 86 aa1.18□□□□□ -2.22
SCFD1-209ENST00000553280 SPANXN1Q5VSR9 72 aa1.18□□□□□ -2.22
SCFD1-209ENST00000553280 OR2T2Q6IF00 324 aa1.18□□□□□ -2.22
SCFD1-209ENST00000553280 PSMG3Q9BT73 122 aaPredicted RBP1.18□□□□□ -2.22
SCFD1-209ENST00000553280 NDUFA12Q9UI09 145 aa1.18□□□□□ -2.22
SCFD1-209ENST00000553280 NINQ8N4C6 2090 aa1.18□□□□□ -2.22
SCFD1-209ENST00000553280 PLXNA2O75051 1894 aa1.18□□□□□ -2.22
SCFD1-209ENST00000553280 FXYD6P3P58550 94 aa1.17□□□□□ -2.22
SCFD1-209ENST00000553280 SPINK13Q1W4C9 94 aa1.17□□□□□ -2.22
SCFD1-209ENST00000553280 SPAG17Q6Q759 2223 aa1.16□□□□□ -2.22
SCFD1-209ENST00000553280 TCRBV3S1A0A5B6 114 aa1.16□□□□□ -2.22
SCFD1-209ENST00000553280 LY6G6CO95867 125 aa1.16□□□□□ -2.22
SCFD1-209ENST00000553280 PIRTP0C851 137 aa1.16□□□□□ -2.22
SCFD1-209ENST00000553280 IFI27L1Q96BM0 104 aa1.16□□□□□ -2.22
SCFD1-209ENST00000553280 ATG2AQ2TAZ0 1938 aa1.15□□□□□ -2.22
SCFD1-209ENST00000553280 K7EP13 123 aa1.15□□□□□ -2.23
SCFD1-209ENST00000553280 TMEM14BQ9NUH8 114 aa1.15□□□□□ -2.23
SCFD1-209ENST00000553280 CCDC167Q9P0B6 97 aa1.15□□□□□ -2.23
SCFD1-209ENST00000553280 ZNF142P52746 1687 aaPredicted RBP1.15□□□□□ -2.23
SCFD1-209ENST00000553280 ZDBF2Q9HCK1 2354 aa1.14□□□□□ -2.23
SCFD1-209ENST00000553280 ZNF137PP52743 207 aa1.14□□□□□ -2.23
SCFD1-209ENST00000553280 RPL37P61927 97 aaKnown RBP1.14□□□□□ -2.23
SCFD1-209ENST00000553280 SELENOWP63302 87 aa1.14□□□□□ -2.23
SCFD1-209ENST00000553280 SLC48A1Q6P1K1 146 aa1.14□□□□□ -2.23
SCFD1-209ENST00000553280 CYP2G1PQ6ZSU1 146 aa1.14□□□□□ -2.23
SCFD1-209ENST00000553280 TSKUQ8WUA8 353 aa1.14□□□□□ -2.23
SCFD1-209ENST00000553280 PPP1R1CQ8WVI7 109 aa1.14□□□□□ -2.23
SCFD1-209ENST00000553280 ARL11Q969Q4 196 aa1.14□□□□□ -2.23
SCFD1-209ENST00000553280 TRAV12-2A0A075B6T6 113 aa1.13□□□□□ -2.23
SCFD1-209ENST00000553280 A0A0D9SG42 100 aa1.13□□□□□ -2.23
SCFD1-209ENST00000553280 KCNRGQ8N5I3 272 aa1.13□□□□□ -2.23
SCFD1-209ENST00000553280 TMEM141Q96I45 108 aa1.13□□□□□ -2.23
SCFD1-209ENST00000553280 LINC00470Q9BZP3 86 aa1.13□□□□□ -2.23
SCFD1-209ENST00000553280 COA4Q9NYJ1 87 aa1.13□□□□□ -2.23
SCFD1-209ENST00000553280 SPTBP11277 2137 aa1.13□□□□□ -2.23
SCFD1-209ENST00000553280 NPC2P61916 151 aa1.12□□□□□ -2.23
SCFD1-209ENST00000553280 C6orf52Q5T4I8 152 aa1.12□□□□□ -2.23
SCFD1-209ENST00000553280 TMEM242Q9NWH2 141 aa1.12□□□□□ -2.23
SCFD1-209ENST00000553280 BET1LQ9NYM9 111 aa1.12□□□□□ -2.23
SCFD1-209ENST00000553280 DAPK1P53355 1430 aa1.12□□□□□ -2.23
SCFD1-209ENST00000553280 AFDNP55196 1824 aaKnown RBP1.11□□□□□ -2.23
SCFD1-209ENST00000553280 TRAV12-3A0A0B4J271 114 aa1.11□□□□□ -2.23
SCFD1-209ENST00000553280 IL5P05113 134 aa1.11□□□□□ -2.23
SCFD1-209ENST00000553280 EMX2Q04743 252 aa1.11□□□□□ -2.23
SCFD1-209ENST00000553280 DPH3Q96FX2 82 aa1.11□□□□□ -2.23
SCFD1-209ENST00000553280 BCORL1Q5H9F3 1711 aa1.11□□□□□ -2.23
SCFD1-209ENST00000553280 MYH13Q9UKX3 1938 aa1.11□□□□□ -2.23
SCFD1-209ENST00000553280 PIPP12273 146 aaPredicted RBP1.1□□□□□ -2.23
SCFD1-209ENST00000553280 C9orf116Q5BN46 136 aaPredicted RBP1.1□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms