RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 C22orf24Q9Y442 160 aa2.21□□□□□ -2.06
SCFD1-208ENST00000553278 CACNA1BQ00975 2339 aa2.2□□□□□ -2.06
SCFD1-208ENST00000553278 FOCADQ5VW36 1801 aa2.2□□□□□ -2.06
SCFD1-208ENST00000553278 TRBV10-1A0A0K0K1A3 114 aa2.2□□□□□ -2.06
SCFD1-208ENST00000553278 PRB4P10163 310 aaPredicted RBP2.2□□□□□ -2.06
SCFD1-208ENST00000553278 FGF7P21781 194 aa2.2□□□□□ -2.06
SCFD1-208ENST00000553278 SPANXN1Q5VSR9 72 aa2.2□□□□□ -2.06
SCFD1-208ENST00000553278 SNRNP25Q9BV90 132 aaKnown RBP2.2□□□□□ -2.06
SCFD1-208ENST00000553278 FBN1P35555 2871 aaKnown RBP2.2□□□□□ -2.06
SCFD1-208ENST00000553278 CASZ1Q86V15 1759 aa2.19□□□□□ -2.06
SCFD1-208ENST00000553278 RPL37AP61513 92 aaKnown RBP2.19□□□□□ -2.06
SCFD1-208ENST00000553278 WHAMMP3Q1A5X7 153 aa2.19□□□□□ -2.06
SCFD1-208ENST00000553278 OR2T2Q6IF00 324 aa2.19□□□□□ -2.06
SCFD1-208ENST00000553278 ZGRF1Q86YA3 2104 aa2.19□□□□□ -2.06
SCFD1-208ENST00000553278 ODF3Q96PU9 254 aa2.19□□□□□ -2.06
SCFD1-208ENST00000553278 CGREF1Q99674 301 aa2.19□□□□□ -2.06
SCFD1-208ENST00000553278 NALCNQ8IZF0 1738 aa2.19□□□□□ -2.06
SCFD1-208ENST00000553278 IL5P05113 134 aa2.18□□□□□ -2.06
SCFD1-208ENST00000553278 PIRTP0C851 137 aa2.18□□□□□ -2.06
SCFD1-208ENST00000553278 SLC25A6P12236 298 aa2.18□□□□□ -2.06
SCFD1-208ENST00000553278 SBSPONQ8IVN8 264 aa2.18□□□□□ -2.06
SCFD1-208ENST00000553278 TMEM242Q9NWH2 141 aa2.18□□□□□ -2.06
SCFD1-208ENST00000553278 MRPL35Q9NZE8 188 aaKnown RBP2.18□□□□□ -2.06
SCFD1-208ENST00000553278 TET1Q8NFU7 2136 aa2.17□□□□□ -2.06
SCFD1-208ENST00000553278 CXorf51AA0A1B0GTR3 108 aa2.17□□□□□ -2.06
SCFD1-208ENST00000553278 IFNGP01579 166 aa2.17□□□□□ -2.06
SCFD1-208ENST00000553278 LYNX1P0DP58 116 aa2.17□□□□□ -2.06
SCFD1-208ENST00000553278 PIPP12273 146 aaPredicted RBP2.17□□□□□ -2.06
SCFD1-208ENST00000553278 FXYD4P59646 89 aa2.17□□□□□ -2.06
SCFD1-208ENST00000553278 SPTSSAQ969W0 71 aa2.17□□□□□ -2.06
SCFD1-208ENST00000553278 NDUFA12Q9UI09 145 aa2.17□□□□□ -2.06
SCFD1-208ENST00000553278 TECTAO75443 2155 aa2.17□□□□□ -2.06
SCFD1-208ENST00000553278 PHRF1Q9P1Y6 1649 aaKnown RBP2.17□□□□□ -2.06
SCFD1-208ENST00000553278 BCL9LQ86UU0 1499 aa2.16□□□□□ -2.06
SCFD1-208ENST00000553278 MBD5Q9P267 1494 aa2.16□□□□□ -2.06
SCFD1-208ENST00000553278 HIGD1CA8MV81 97 aa2.16□□□□□ -2.06
SCFD1-208ENST00000553278 AKAIN1P0CW23 69 aa2.16□□□□□ -2.06
SCFD1-208ENST00000553278 HIST1H1DP16402 221 aaKnown RBP2.16□□□□□ -2.06
SCFD1-208ENST00000553278 BTG2P78543 158 aa2.16□□□□□ -2.06
SCFD1-208ENST00000553278 KRTAP21-3Q3LHN1 58 aa2.16□□□□□ -2.06
SCFD1-208ENST00000553278 NDUFA11Q86Y39 141 aa2.16□□□□□ -2.06
SCFD1-208ENST00000553278 SEC11CQ9BY50 192 aa2.16□□□□□ -2.06
SCFD1-208ENST00000553278 RERGLQ9H628 205 aa2.16□□□□□ -2.06
SCFD1-208ENST00000553278 GNG8Q9UK08 70 aa2.16□□□□□ -2.06
SCFD1-208ENST00000553278 CTTNBP2Q8WZ74 1663 aa2.15□□□□□ -2.06
SCFD1-208ENST00000553278 SNRNP200O75643 2136 aaKnown RBP2.15□□□□□ -2.06
SCFD1-208ENST00000553278 EIF4G3O43432 1585 aaKnown RBP2.15□□□□□ -2.06
SCFD1-208ENST00000553278 AKAP11Q9UKA4 1901 aa2.15□□□□□ -2.06
SCFD1-208ENST00000553278 SPEF2Q9C093 1822 aa2.15□□□□□ -2.06
SCFD1-208ENST00000553278 SNCGO76070 127 aa2.15□□□□□ -2.07
SCFD1-208ENST00000553278 ANGP03950 147 aaKnown RBP2.15□□□□□ -2.07
SCFD1-208ENST00000553278 PRB1P04280 392 aa2.15□□□□□ -2.07
SCFD1-208ENST00000553278 CCKP06307 115 aa2.15□□□□□ -2.07
SCFD1-208ENST00000553278 KRTAP12-4P60329 112 aa2.15□□□□□ -2.07
SCFD1-208ENST00000553278 Q6ZSA8 131 aa2.15□□□□□ -2.07
SCFD1-208ENST00000553278 AMELYQ99218 206 aa2.15□□□□□ -2.07
SCFD1-208ENST00000553278 AGPAT4-IT1Q9H0P7 198 aa2.15□□□□□ -2.07
SCFD1-208ENST00000553278 NAA60Q9H7X0 242 aa2.15□□□□□ -2.07
SCFD1-208ENST00000553278 PLXNA2O75051 1894 aa2.15□□□□□ -2.07
SCFD1-208ENST00000553278 E9PCH4 1651 aa2.15□□□□□ -2.07
SCFD1-208ENST00000553278 NCR3O14931 201 aa2.14□□□□□ -2.07
SCFD1-208ENST00000553278 NDUFB6O95139 128 aa2.14□□□□□ -2.07
SCFD1-208ENST00000553278 RPL7L1Q6DKI1 246 aaKnown RBP2.14□□□□□ -2.07
SCFD1-208ENST00000553278 TMEM141Q96I45 108 aa2.14□□□□□ -2.07
SCFD1-208ENST00000553278 PEAK1Q9H792 1746 aa2.14□□□□□ -2.07
SCFD1-208ENST00000553278 SPAG17Q6Q759 2223 aa2.13□□□□□ -2.07
SCFD1-208ENST00000553278 LOC100130705A0A1B0GUX0 176 aa2.13□□□□□ -2.07
SCFD1-208ENST00000553278 F6UZH7 168 aa2.13□□□□□ -2.07
SCFD1-208ENST00000553278 PP6455Q8WZ26 134 aa2.13□□□□□ -2.07
SCFD1-208ENST00000553278 CFTRP13569 1480 aa2.13□□□□□ -2.07
SCFD1-208ENST00000553278 CDK12Q9NYV4 1490 aaPredicted RBP2.13□□□□□ -2.07
SCFD1-208ENST00000553278 A6NIN4 97 aa2.12□□□□□ -2.07
SCFD1-208ENST00000553278 TFF1P04155 84 aa2.12□□□□□ -2.07
SCFD1-208ENST00000553278 MRPS10P82664 201 aaKnown RBP2.12□□□□□ -2.07
SCFD1-208ENST00000553278 SLC48A1Q6P1K1 146 aa2.12□□□□□ -2.07
SCFD1-208ENST00000553278 SCN3BQ9NY72 215 aa2.12□□□□□ -2.07
SCFD1-208ENST00000553278 SERP1Q9Y6X1 66 aa2.12□□□□□ -2.07
SCFD1-208ENST00000553278 NCOA6Q14686 2063 aaPredicted RBP2.12□□□□□ -2.07
SCFD1-208ENST00000553278 RP1L1Q8IWN7 2480 aaPredicted RBP2.12□□□□□ -2.07
SCFD1-208ENST00000553278 MIF4GDA9UHW6 222 aaKnown RBP2.11□□□□□ -2.07
SCFD1-208ENST00000553278 S100PP25815 95 aa2.11□□□□□ -2.07
SCFD1-208ENST00000553278 XAF1Q6GPH4 301 aa2.11□□□□□ -2.07
SCFD1-208ENST00000553278 ASCC3Q8N3C0 2202 aaKnown RBP2.11□□□□□ -2.07
SCFD1-208ENST00000553278 FAM135AQ9P2D6 1515 aa2.11□□□□□ -2.07
SCFD1-208ENST00000553278 ATG2AQ2TAZ0 1938 aa2.11□□□□□ -2.07
SCFD1-208ENST00000553278 PRRC2BQ5JSZ5 2229 aaKnown RBP2.1□□□□□ -2.07
SCFD1-208ENST00000553278 DAPK1P53355 1430 aa2.1□□□□□ -2.07
SCFD1-208ENST00000553278 LOC101927531A0A1B0GV80 90 aa2.1□□□□□ -2.07
SCFD1-208ENST00000553278 Q6ZQY7 126 aa2.1□□□□□ -2.07
SCFD1-208ENST00000553278 DEFB132Q7Z7B7 95 aa2.1□□□□□ -2.07
SCFD1-208ENST00000553278 RIMS1Q86UR5 1692 aaKnown RBP2.09□□□□□ -2.07
SCFD1-208ENST00000553278 PTPRMP28827 1452 aa2.09□□□□□ -2.07
SCFD1-208ENST00000553278 TEX49A0A1B0GTD5 131 aa2.09□□□□□ -2.07
SCFD1-208ENST00000553278 CORTO00230 105 aa2.09□□□□□ -2.07
SCFD1-208ENST00000553278 S100A1P23297 94 aa2.09□□□□□ -2.07
SCFD1-208ENST00000553278 Q56UQ5 140 aa2.09□□□□□ -2.07
SCFD1-208ENST00000553278 IFI27L1Q96BM0 104 aa2.09□□□□□ -2.07
SCFD1-208ENST00000553278 FLG2Q5D862 2391 aaPredicted RBP2.09□□□□□ -2.08
SCFD1-208ENST00000553278 SPAARA0A1B0GVQ0 90 aa2.08□□□□□ -2.08
SCFD1-208ENST00000553278 MCRIP1C9JLW8 97 aa2.08□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms