RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 RS1O15537 224 aa9.73□□□□□ -0.85
USP28-209ENST00000540925 H2AFB1P0C5Y9 115 aa9.73□□□□□ -0.85
USP28-209ENST00000540925 CCL20P78556 96 aa9.73□□□□□ -0.85
USP28-209ENST00000540925 ZNF674Q2M3X9 581 aa9.73□□□□□ -0.85
USP28-209ENST00000540925 SOHLH1Q5JUK2 328 aa9.73□□□□□ -0.85
USP28-209ENST00000540925 ZNF506Q5JVG8 444 aa9.73□□□□□ -0.85
USP28-209ENST00000540925 PIK3CD-AS1Q5SR53 167 aa9.73□□□□□ -0.85
USP28-209ENST00000540925 LYPD5Q6UWN5 251 aa9.73□□□□□ -0.85
USP28-209ENST00000540925 C6orf223Q8N319 242 aa9.73□□□□□ -0.85
USP28-209ENST00000540925 KRBOX1C9JBD0 128 aa9.72□□□□□ -0.85
USP28-209ENST00000540925 SH2D1AO60880 128 aa9.72□□□□□ -0.85
USP28-209ENST00000540925 ORM1P02763 201 aa9.72□□□□□ -0.85
USP28-209ENST00000540925 RAB5CP51148 216 aa9.72□□□□□ -0.85
USP28-209ENST00000540925 NEGR1Q7Z3B1 354 aa9.72□□□□□ -0.85
USP28-209ENST00000540925 MLST8Q9BVC4 326 aa9.72□□□□□ -0.85
USP28-209ENST00000540925 IL36BQ9NZH7 164 aa9.72□□□□□ -0.85
USP28-209ENST00000540925 A0A1B0GV50 99 aa9.71□□□□□ -0.86
USP28-209ENST00000540925 SCO2A0A1W2PP80 73 aa9.71□□□□□ -0.86
USP28-209ENST00000540925 C9JCJ5 164 aa9.71□□□□□ -0.86
USP28-209ENST00000540925 CIDEAO60543 219 aa9.71□□□□□ -0.86
USP28-209ENST00000540925 GYPEP15421 78 aa9.71□□□□□ -0.86
USP28-209ENST00000540925 BTF3P20290 206 aaKnown RBP9.71□□□□□ -0.86
USP28-209ENST00000540925 UBE2G1P62253 170 aa9.71□□□□□ -0.86
USP28-209ENST00000540925 LINC01559Q495D7 138 aa9.71□□□□□ -0.86
USP28-209ENST00000540925 TTC32Q5I0X7 151 aa9.71□□□□□ -0.86
USP28-209ENST00000540925 FAM162BQ5T6X4 162 aa9.71□□□□□ -0.86
USP28-209ENST00000540925 HSPG2P98160 4391 aa9.71□□□□□ -0.86
USP28-209ENST00000540925 LOC100131303A0A0U1RQF7 123 aa9.7□□□□□ -0.86
USP28-209ENST00000540925 B4DEV8 164 aa9.7□□□□□ -0.86
USP28-209ENST00000540925 NXPH4O95158 308 aa9.7□□□□□ -0.86
USP28-209ENST00000540925 S100A9P06702 114 aaKnown RBP9.7□□□□□ -0.86
USP28-209ENST00000540925 AKR1C3P42330 323 aa9.7□□□□□ -0.86
USP28-209ENST00000540925 SULT1A2P50226 295 aa9.7□□□□□ -0.86
USP28-209ENST00000540925 UFSP1Q6NVU6 142 aa9.7□□□□□ -0.86
USP28-209ENST00000540925 SLC51BQ86UW2 128 aa9.7□□□□□ -0.86
USP28-209ENST00000540925 SLC25A29Q8N8R3 303 aa9.7□□□□□ -0.86
USP28-209ENST00000540925 SCRT2Q9NQ03 307 aa9.7□□□□□ -0.86
USP28-209ENST00000540925 APOBP04114 4563 aaKnown RBP9.7□□□□□ -0.86
USP28-209ENST00000540925 SIVA1O15304 175 aa9.69□□□□□ -0.86
USP28-209ENST00000540925 SRIP30626 198 aa9.69□□□□□ -0.86
USP28-209ENST00000540925 ASIPP42127 132 aa9.69□□□□□ -0.86
USP28-209ENST00000540925 TIRAPP58753 221 aa9.69□□□□□ -0.86
USP28-209ENST00000540925 TNP2Q05952 138 aa9.69□□□□□ -0.86
USP28-209ENST00000540925 EIF5AL1Q6IS14 154 aaKnown RBP9.69□□□□□ -0.86
USP28-209ENST00000540925 C9orf62Q8N4C0 152 aa9.69□□□□□ -0.86
USP28-209ENST00000540925 C11orf52Q96A22 123 aa9.69□□□□□ -0.86
USP28-209ENST00000540925 MANBALQ9NQG1 85 aa9.69□□□□□ -0.86
USP28-209ENST00000540925 TRBV6-4A0A1B0GX49 114 aa9.68□□□□□ -0.86
USP28-209ENST00000540925 ZFP2Q6ZN57 461 aa9.68□□□□□ -0.86
USP28-209ENST00000540925 AKAP14Q86UN6 197 aa9.68□□□□□ -0.86
USP28-209ENST00000540925 PCNPQ8WW12 178 aaKnown RBP9.68□□□□□ -0.86
USP28-209ENST00000540925 PARLQ9H300 379 aa9.68□□□□□ -0.86
USP28-209ENST00000540925 H3BVH4 76 aa9.67□□□□□ -0.86
USP28-209ENST00000540925 M0R036 132 aa9.67□□□□□ -0.86
USP28-209ENST00000540925 ARMS2P0C7Q2 107 aa9.67□□□□□ -0.86
USP28-209ENST00000540925 S100A4P26447 101 aaKnown RBP9.67□□□□□ -0.86
USP28-209ENST00000540925 Q6ZRN7 208 aaPredicted RBP9.67□□□□□ -0.86
USP28-209ENST00000540925 Q6ZSN1 163 aa9.67□□□□□ -0.86
USP28-209ENST00000540925 SH2D6Q7Z4S9 175 aa9.67□□□□□ -0.86
USP28-209ENST00000540925 NHLRC2Q8NBF2 726 aa9.67□□□□□ -0.86
USP28-209ENST00000540925 TXNDC17Q9BRA2 123 aa9.67□□□□□ -0.86
USP28-209ENST00000540925 A8MWV9 139 aa9.66□□□□□ -0.86
USP28-209ENST00000540925 LINC00694P0DN24 101 aa9.66□□□□□ -0.86
USP28-209ENST00000540925 MGST1P10620 155 aaKnown RBP9.66□□□□□ -0.86
USP28-209ENST00000540925 DMRTA1Q5VZB9 504 aa9.66□□□□□ -0.86
USP28-209ENST00000540925 BAGE2Q86Y30 109 aa9.66□□□□□ -0.86
USP28-209ENST00000540925 DERL1Q9BUN8 251 aa9.66□□□□□ -0.86
USP28-209ENST00000540925 SAMD10Q9BYL1 202 aa9.66□□□□□ -0.86
USP28-209ENST00000540925 JPT2Q9H910 190 aa9.66□□□□□ -0.86
USP28-209ENST00000540925 GNG13Q9P2W3 67 aa9.66□□□□□ -0.86
USP28-209ENST00000540925 hCG_2014768A0A024R1R8 64 aa9.65□□□□□ -0.86
USP28-209ENST00000540925 IGHV3-73A0A0B4J1V6 119 aa9.65□□□□□ -0.86
USP28-209ENST00000540925 GRIFINA4D1Z8 144 aa9.65□□□□□ -0.86
USP28-209ENST00000540925 CXCL1P09341 107 aa9.65□□□□□ -0.86
USP28-209ENST00000540925 RPL35P42766 123 aaKnown RBP9.65□□□□□ -0.86
USP28-209ENST00000540925 LINC00315P59091 139 aa9.65□□□□□ -0.86
USP28-209ENST00000540925 RHOHQ15669 191 aa9.65□□□□□ -0.86
USP28-209ENST00000540925 WFDC10BQ8IUB3 73 aa9.65□□□□□ -0.86
USP28-209ENST00000540925 IGLV2-8P01709 118 aa9.64□□□□□ -0.87
USP28-209ENST00000540925 DNAH10OSP0CZ25 163 aa9.64□□□□□ -0.87
USP28-209ENST00000540925 MED14OSP0DP75 135 aa9.64□□□□□ -0.87
USP28-209ENST00000540925 PRADC1Q9BSG0 188 aa9.64□□□□□ -0.87
USP28-209ENST00000540925 TMSB15BA0A087X1C1 80 aa9.63□□□□□ -0.87
USP28-209ENST00000540925 K7EP13 123 aa9.63□□□□□ -0.87
USP28-209ENST00000540925 CRYGDP07320 174 aa9.63□□□□□ -0.87
USP28-209ENST00000540925 MEF2BQ02080 365 aaPredicted RBP9.63□□□□□ -0.87
USP28-209ENST00000540925 SFRP2Q96HF1 295 aa9.63□□□□□ -0.87
USP28-209ENST00000540925 SSBP4Q9BWG4 385 aaPredicted RBP9.63□□□□□ -0.87
USP28-209ENST00000540925 Q9UF83 564 aa9.63□□□□□ -0.87
USP28-209ENST00000540925 A0A1B0GVG6 124 aa9.62□□□□□ -0.87
USP28-209ENST00000540925 TEX46H3BTG2 121 aa9.62□□□□□ -0.87
USP28-209ENST00000540925 BCL2P10415 239 aa9.62□□□□□ -0.87
USP28-209ENST00000540925 RPL19P84098 196 aaKnown RBP9.62□□□□□ -0.87
USP28-209ENST00000540925 PHLDA3Q9Y5J5 127 aa9.62□□□□□ -0.87
USP28-209ENST00000540925 LY96Q9Y6Y9 160 aa9.62□□□□□ -0.87
USP28-209ENST00000540925 TRBV20OR9-2A0A075B6H5 130 aa9.61□□□□□ -0.87
USP28-209ENST00000540925 RHODO00212 210 aa9.61□□□□□ -0.87
USP28-209ENST00000540925 SNAI2O43623 268 aa9.61□□□□□ -0.87
USP28-209ENST00000540925 PDE6DO43924 150 aa9.61□□□□□ -0.87
USP28-209ENST00000540925 C14orf178Q8N769 122 aaPredicted RBP9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 87.7 ms