RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 PSG8Q9UQ74 426 aa15.53■□□□□ 0.08
CPSF1-202ENST00000527827 IGLV2-11P01706 119 aa15.52■□□□□ 0.08
CPSF1-202ENST00000527827 PET100P0DJ07 73 aa15.52■□□□□ 0.08
CPSF1-202ENST00000527827 ARL14EPLP0DKL9 152 aa15.52■□□□□ 0.08
CPSF1-202ENST00000527827 LINC00299Q6ZSB3 139 aa15.52■□□□□ 0.08
CPSF1-202ENST00000527827 OR10G9Q8NGN4 311 aa15.52■□□□□ 0.08
CPSF1-202ENST00000527827 OR10G7Q8NGN6 311 aa15.52■□□□□ 0.08
CPSF1-202ENST00000527827 GAGE12JA6NER3 117 aa15.51■□□□□ 0.07
CPSF1-202ENST00000527827 IFITM3Q01628 133 aa15.51■□□□□ 0.07
CPSF1-202ENST00000527827 GAGE1Q13065 139 aa15.51■□□□□ 0.07
CPSF1-202ENST00000527827 GAGE4Q13068 117 aa15.51■□□□□ 0.07
CPSF1-202ENST00000527827 GAGE5Q13069 117 aa15.51■□□□□ 0.07
CPSF1-202ENST00000527827 LINC01620Q4KN68 170 aa15.51■□□□□ 0.07
CPSF1-202ENST00000527827 GAGE13Q4V321 117 aa15.51■□□□□ 0.07
CPSF1-202ENST00000527827 C5orf17Q8NAS9 161 aa15.51■□□□□ 0.07
CPSF1-202ENST00000527827 S100ZQ8WXG8 99 aa15.51■□□□□ 0.07
CPSF1-202ENST00000527827 BAALCQ8WXS3 180 aa15.51■□□□□ 0.07
CPSF1-202ENST00000527827 PARLQ9H300 379 aa15.51■□□□□ 0.07
CPSF1-202ENST00000527827 Q9UF83 564 aa15.51■□□□□ 0.07
CPSF1-202ENST00000527827 LRP1Q07954 4544 aaKnown RBP15.5■□□□□ 0.07
CPSF1-202ENST00000527827 UPK1BO75841 260 aa15.5■□□□□ 0.07
CPSF1-202ENST00000527827 SCXQ7RTU7 201 aa15.5■□□□□ 0.07
CPSF1-202ENST00000527827 STAG3L2P0CL84 134 aa15.49■□□□□ 0.07
CPSF1-202ENST00000527827 STAG3L3P0CL85 134 aa15.49■□□□□ 0.07
CPSF1-202ENST00000527827 SMUG1Q53HV7 270 aa15.49■□□□□ 0.07
CPSF1-202ENST00000527827 ZFP2Q6ZN57 461 aa15.49■□□□□ 0.07
CPSF1-202ENST00000527827 SUN5Q8TC36 379 aa15.49■□□□□ 0.07
CPSF1-202ENST00000527827 SH3BGRL3Q9H299 93 aa15.49■□□□□ 0.07
CPSF1-202ENST00000527827 CDC34P49427 236 aaPredicted RBP15.48■□□□□ 0.07
CPSF1-202ENST00000527827 KRTAP10-4P60372 401 aaPredicted RBP15.48■□□□□ 0.07
CPSF1-202ENST00000527827 FLI1Q01543 452 aaPredicted RBP15.48■□□□□ 0.07
CPSF1-202ENST00000527827 TOR2AQ5JU69 321 aa15.48■□□□□ 0.07
CPSF1-202ENST00000527827 PRNTQ86SH4 94 aa15.48■□□□□ 0.07
CPSF1-202ENST00000527827 MARVELD1Q9BSK0 173 aa15.48■□□□□ 0.07
CPSF1-202ENST00000527827 GGTLC3B5MD39 225 aa15.47■□□□□ 0.07
CPSF1-202ENST00000527827 K7EQM0 130 aa15.47■□□□□ 0.07
CPSF1-202ENST00000527827 UFSP1Q6NVU6 142 aa15.47■□□□□ 0.07
CPSF1-202ENST00000527827 LINC00479Q96M42 142 aa15.47■□□□□ 0.07
CPSF1-202ENST00000527827 SAMD10Q9BYL1 202 aa15.47■□□□□ 0.07
CPSF1-202ENST00000527827 IGKV3D-20A0A0C4DH25 116 aa15.46■□□□□ 0.07
CPSF1-202ENST00000527827 A8MWV9 139 aa15.46■□□□□ 0.07
CPSF1-202ENST00000527827 SSNA1O43805 119 aa15.46■□□□□ 0.07
CPSF1-202ENST00000527827 GCHFRP30047 84 aa15.46■□□□□ 0.07
CPSF1-202ENST00000527827 ZFP69Q49AA0 526 aa15.46■□□□□ 0.07
CPSF1-202ENST00000527827 CYB561D1Q8N8Q1 229 aa15.46■□□□□ 0.07
CPSF1-202ENST00000527827 OR2T35Q8NGX2 323 aa15.46■□□□□ 0.07
CPSF1-202ENST00000527827 DNAJC30Q96LL9 226 aa15.46■□□□□ 0.07
CPSF1-202ENST00000527827 JPT2Q9H910 190 aa15.46■□□□□ 0.07
CPSF1-202ENST00000527827 EPDR1Q9UM22 224 aa15.46■□□□□ 0.07
CPSF1-202ENST00000527827 SUMO1P63165 101 aaKnown RBP15.45■□□□□ 0.06
CPSF1-202ENST00000527827 PIK3CD-AS1Q5SR53 167 aa15.45■□□□□ 0.06
CPSF1-202ENST00000527827 C14orf178Q8N769 122 aaPredicted RBP15.45■□□□□ 0.06
CPSF1-202ENST00000527827 RAB24Q969Q5 203 aa15.45■□□□□ 0.06
CPSF1-202ENST00000527827 COX11Q9Y6N1 276 aa15.45■□□□□ 0.06
CPSF1-202ENST00000527827 HMCN2Q8NDA2 5059 aa15.44■□□□□ 0.06
CPSF1-202ENST00000527827 A0A087WWC5 75 aa15.44■□□□□ 0.06
CPSF1-202ENST00000527827 LGALSLQ3ZCW2 172 aaPredicted RBP15.44■□□□□ 0.06
CPSF1-202ENST00000527827 OR2G3Q8NGZ4 309 aa15.44■□□□□ 0.06
CPSF1-202ENST00000527827 RNF222A6NCQ9 220 aa15.43■□□□□ 0.06
CPSF1-202ENST00000527827 RBFOX3A6NFN3 312 aa15.43■□□□□ 0.06
CPSF1-202ENST00000527827 Q8N976 141 aa15.43■□□□□ 0.06
CPSF1-202ENST00000527827 CHAC1Q9BUX1 264 aa15.43■□□□□ 0.06
CPSF1-202ENST00000527827 S100A4P26447 101 aaKnown RBP15.42■□□□□ 0.06
CPSF1-202ENST00000527827 SAPCD1Q5SSQ6 148 aa15.42■□□□□ 0.06
CPSF1-202ENST00000527827 SERTAD4-AS1Q5TG53 156 aa15.42■□□□□ 0.06
CPSF1-202ENST00000527827 NIT1Q86X76 327 aa15.42■□□□□ 0.06
CPSF1-202ENST00000527827 HSD17B11Q8NBQ5 300 aa15.42■□□□□ 0.06
CPSF1-202ENST00000527827 RMI2Q96E14 147 aa15.42■□□□□ 0.06
CPSF1-202ENST00000527827 FAT3Q8TDW7 4589 aa15.42■□□□□ 0.06
CPSF1-202ENST00000527827 FGF8P55075 233 aaPredicted RBP15.41■□□□□ 0.06
CPSF1-202ENST00000527827 IGKV2D-24A0A075B6R9 120 aa15.4■□□□□ 0.06
CPSF1-202ENST00000527827 ASIPP42127 132 aa15.4■□□□□ 0.06
CPSF1-202ENST00000527827 CIRBP-AS1Q8TBR5 109 aa15.4■□□□□ 0.06
CPSF1-202ENST00000527827 IL36BQ9NZH7 164 aa15.4■□□□□ 0.06
CPSF1-202ENST00000527827 TRAV34A0A0B4J273 112 aa15.39■□□□□ 0.05
CPSF1-202ENST00000527827 DMRTA1Q5VZB9 504 aa15.39■□□□□ 0.05
CPSF1-202ENST00000527827 PSMG3Q9BT73 122 aaPredicted RBP15.39■□□□□ 0.05
CPSF1-202ENST00000527827 TMEM167BQ9NRX6 74 aa15.39■□□□□ 0.05
CPSF1-202ENST00000527827 KLK12Q9UKR0 248 aa15.39■□□□□ 0.05
CPSF1-202ENST00000527827 FABP5P3A8MUU1 101 aa15.38■□□□□ 0.05
CPSF1-202ENST00000527827 CXorf1O96002 111 aa15.38■□□□□ 0.05
CPSF1-202ENST00000527827 OXTP01178 125 aa15.38■□□□□ 0.05
CPSF1-202ENST00000527827 URGCP-MRPS24S4R325 110 aa15.38■□□□□ 0.05
CPSF1-202ENST00000527827 ARL2-SNX15V9GYD0 113 aa15.38■□□□□ 0.05
CPSF1-202ENST00000527827 ATP6V0CP27449 155 aa15.37■□□□□ 0.05
CPSF1-202ENST00000527827 SYT8Q8NBV8 401 aa15.37■□□□□ 0.05
CPSF1-202ENST00000527827 H3BVH4 76 aa15.36■□□□□ 0.05
CPSF1-202ENST00000527827 SEC11BP0C7V7 166 aa15.36■□□□□ 0.05
CPSF1-202ENST00000527827 UBE2WQ96B02 151 aa15.36■□□□□ 0.05
CPSF1-202ENST00000527827 A0A1W2PRE2 83 aa15.35■□□□□ 0.05
CPSF1-202ENST00000527827 RHODO00212 210 aa15.35■□□□□ 0.05
CPSF1-202ENST00000527827 MBP02144 154 aa15.35■□□□□ 0.05
CPSF1-202ENST00000527827 SERF2P84101 59 aa15.35■□□□□ 0.05
CPSF1-202ENST00000527827 DNLZQ5SXM8 178 aa15.35■□□□□ 0.05
CPSF1-202ENST00000527827 ATRAIDQ6UW56 229 aa15.35■□□□□ 0.05
CPSF1-202ENST00000527827 B4DEV8 164 aa15.34■□□□□ 0.05
CPSF1-202ENST00000527827 ARMS2P0C7Q2 107 aa15.34■□□□□ 0.05
CPSF1-202ENST00000527827 CRIP1P50238 77 aa15.34■□□□□ 0.05
CPSF1-202ENST00000527827 FAM74A4Q5TZK3 123 aa15.34■□□□□ 0.05
CPSF1-202ENST00000527827 ACTR3CQ9C0K3 210 aaPredicted RBP15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms