RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 TRAV26-1A0A087WT03 109 aa10□□□□□ -0.81
NUP54-216ENST00000514901 TMSB15BA0A087X1C1 80 aa10□□□□□ -0.81
NUP54-216ENST00000514901 GRIFINA4D1Z8 144 aa10□□□□□ -0.81
NUP54-216ENST00000514901 LY6G6CO95867 125 aa10□□□□□ -0.81
NUP54-216ENST00000514901 ARMS2P0C7Q2 107 aa10□□□□□ -0.81
NUP54-216ENST00000514901 P0DMU3 169 aa10□□□□□ -0.81
NUP54-216ENST00000514901 FAM231AP0DMU4 169 aa10□□□□□ -0.81
NUP54-216ENST00000514901 FAM231CP0DMU5 169 aa10□□□□□ -0.81
NUP54-216ENST00000514901 MED14OSP0DP75 135 aa10□□□□□ -0.81
NUP54-216ENST00000514901 RPS20P60866 119 aaKnown RBP10□□□□□ -0.81
NUP54-216ENST00000514901 ZNF575Q86XF7 245 aa10□□□□□ -0.81
NUP54-216ENST00000514901 SYT8Q8NBV8 401 aa10□□□□□ -0.81
NUP54-216ENST00000514901 PCNPQ8WW12 178 aaKnown RBP10□□□□□ -0.81
NUP54-216ENST00000514901 PRO0255Q9UI72 69 aa10□□□□□ -0.81
NUP54-216ENST00000514901 PHLDA3Q9Y5J5 127 aa10□□□□□ -0.81
NUP54-216ENST00000514901 LY96Q9Y6Y9 160 aa10□□□□□ -0.81
NUP54-216ENST00000514901 NACAE9PAV3 2078 aa10□□□□□ -0.81
NUP54-216ENST00000514901 VPS13DQ5THJ4 4388 aa10□□□□□ -0.81
NUP54-216ENST00000514901 TRGV4A0A0C4DH28 118 aa9.99□□□□□ -0.81
NUP54-216ENST00000514901 XKRY2A2RUG3 117 aa9.99□□□□□ -0.81
NUP54-216ENST00000514901 C19orf71A6NCJ1 209 aa9.99□□□□□ -0.81
NUP54-216ENST00000514901 PGPEP1LA6NFU8 196 aa9.99□□□□□ -0.81
NUP54-216ENST00000514901 H3BVH4 76 aa9.99□□□□□ -0.81
NUP54-216ENST00000514901 P01737 135 aa9.99□□□□□ -0.81
NUP54-216ENST00000514901 IGHV3-53P01767 116 aa9.99□□□□□ -0.81
NUP54-216ENST00000514901 SRP19P09132 144 aaKnown RBP9.99□□□□□ -0.81
NUP54-216ENST00000514901 CEBPGP53567 150 aa9.99□□□□□ -0.81
NUP54-216ENST00000514901 FHL2Q14192 279 aa9.99□□□□□ -0.81
NUP54-216ENST00000514901 POM121L12Q8N7R1 296 aa9.99□□□□□ -0.81
NUP54-216ENST00000514901 OCC1Q8TAD7 63 aa9.99□□□□□ -0.81
NUP54-216ENST00000514901 SCRT2Q9NQ03 307 aa9.99□□□□□ -0.81
NUP54-216ENST00000514901 HHLA3Q9XRX5 114 aa9.99□□□□□ -0.81
NUP54-216ENST00000514901 A8MWV9 139 aa9.98□□□□□ -0.81
NUP54-216ENST00000514901 RS1O15537 224 aa9.98□□□□□ -0.81
NUP54-216ENST00000514901 PAX4O43316 350 aa9.98□□□□□ -0.81
NUP54-216ENST00000514901 NUDT3O95989 172 aa9.98□□□□□ -0.81
NUP54-216ENST00000514901 FAM74A3Q4VXF1 159 aa9.98□□□□□ -0.81
NUP54-216ENST00000514901 ZNF479Q96JC4 524 aa9.98□□□□□ -0.81
NUP54-216ENST00000514901 A0A0J9YY99 117 aa9.97□□□□□ -0.81
NUP54-216ENST00000514901 ZNF727A8MUV8 499 aa9.97□□□□□ -0.81
NUP54-216ENST00000514901 SFTA3P0C7M3 94 aa9.97□□□□□ -0.81
NUP54-216ENST00000514901 CRYBA4P53673 196 aa9.97□□□□□ -0.81
NUP54-216ENST00000514901 RPL19P84098 196 aaKnown RBP9.97□□□□□ -0.81
NUP54-216ENST00000514901 RNF212Q495C1 297 aa9.97□□□□□ -0.81
NUP54-216ENST00000514901 CFAP126Q5VTH2 177 aa9.97□□□□□ -0.81
NUP54-216ENST00000514901 ZFP82Q8N141 532 aa9.97□□□□□ -0.81
NUP54-216ENST00000514901 OR2D3Q8NGH3 330 aa9.97□□□□□ -0.81
NUP54-216ENST00000514901 VSIG2Q96IQ7 327 aa9.97□□□□□ -0.81
NUP54-216ENST00000514901 SMIM7Q9BQ49 75 aa9.97□□□□□ -0.81
NUP54-216ENST00000514901 SSBP4Q9BWG4 385 aaPredicted RBP9.97□□□□□ -0.81
NUP54-216ENST00000514901 OR5AL1P0C617 328 aa9.96□□□□□ -0.82
NUP54-216ENST00000514901 DMRTA1Q5VZB9 504 aa9.96□□□□□ -0.82
NUP54-216ENST00000514901 ZFP2Q6ZN57 461 aa9.96□□□□□ -0.82
NUP54-216ENST00000514901 DNAH6Q9C0G6 4158 aa9.95□□□□□ -0.82
NUP54-216ENST00000514901 K7EN84 100 aa9.95□□□□□ -0.82
NUP54-216ENST00000514901 SNAI2O43623 268 aa9.95□□□□□ -0.82
NUP54-216ENST00000514901 FAM3BP58499 235 aaPredicted RBP9.95□□□□□ -0.82
NUP54-216ENST00000514901 CLLU1Q5K131 121 aa9.95□□□□□ -0.82
NUP54-216ENST00000514901 NUDT10Q8NFP7 164 aa9.95□□□□□ -0.82
NUP54-216ENST00000514901 NUDT11Q96G61 164 aa9.95□□□□□ -0.82
NUP54-216ENST00000514901 A0A1W2PPQ1 181 aa9.94□□□□□ -0.82
NUP54-216ENST00000514901 RHODO00212 210 aa9.94□□□□□ -0.82
NUP54-216ENST00000514901 GATA1P15976 413 aaPredicted RBP9.94□□□□□ -0.82
NUP54-216ENST00000514901 CCL18P55774 89 aa9.94□□□□□ -0.82
NUP54-216ENST00000514901 MRPL23Q16540 153 aaKnown RBP9.94□□□□□ -0.82
NUP54-216ENST00000514901 FAM231DQ6ZW35 169 aa9.94□□□□□ -0.82
NUP54-216ENST00000514901 UBE2DNLQ8IWF7 75 aa9.94□□□□□ -0.82
NUP54-216ENST00000514901 ICOSQ9Y6W8 199 aa9.94□□□□□ -0.82
NUP54-216ENST00000514901 KMT2AQ03164 3969 aa9.93□□□□□ -0.82
NUP54-216ENST00000514901 C9JQL5 133 aa9.93□□□□□ -0.82
NUP54-216ENST00000514901 F2Z2F3 143 aa9.93□□□□□ -0.82
NUP54-216ENST00000514901 M0R381 172 aa9.93□□□□□ -0.82
NUP54-216ENST00000514901 NXPH4O95158 308 aa9.93□□□□□ -0.82
NUP54-216ENST00000514901 IFITM2Q01629 132 aa9.93□□□□□ -0.82
NUP54-216ENST00000514901 TMEM241Q24JQ0 296 aa9.93□□□□□ -0.82
NUP54-216ENST00000514901 FER1L6-AS1Q8NA97 138 aa9.93□□□□□ -0.82
NUP54-216ENST00000514901 SFRP2Q96HF1 295 aa9.93□□□□□ -0.82
NUP54-216ENST00000514901 RNASE7Q9H1E1 156 aaKnown RBP9.93□□□□□ -0.82
NUP54-216ENST00000514901 RPP21Q9H633 154 aaKnown RBP9.93□□□□□ -0.82
NUP54-216ENST00000514901 A0A096LPF7 62 aa9.92□□□□□ -0.82
NUP54-216ENST00000514901 TRBV6-4A0A1B0GX49 114 aa9.92□□□□□ -0.82
NUP54-216ENST00000514901 IGLC6P0CF74 106 aa9.92□□□□□ -0.82
NUP54-216ENST00000514901 ERVFC1-1P60608 527 aa9.92□□□□□ -0.82
NUP54-216ENST00000514901 CACNG7P62955 275 aa9.92□□□□□ -0.82
NUP54-216ENST00000514901 SRSF3P84103 164 aaKnown RBP9.92□□□□□ -0.82
NUP54-216ENST00000514901 SOHLH1Q5JUK2 328 aa9.92□□□□□ -0.82
NUP54-216ENST00000514901 SPANXN1Q5VSR9 72 aa9.92□□□□□ -0.82
NUP54-216ENST00000514901 SH2D6Q7Z4S9 175 aa9.92□□□□□ -0.82
NUP54-216ENST00000514901 LINC01551Q86U37 167 aa9.92□□□□□ -0.82
NUP54-216ENST00000514901 PRADC1Q9BSG0 188 aa9.92□□□□□ -0.82
NUP54-216ENST00000514901 GATCO43716 136 aaKnown RBP9.91□□□□□ -0.82
NUP54-216ENST00000514901 GZMBP10144 247 aa9.91□□□□□ -0.82
NUP54-216ENST00000514901 GYPEP15421 78 aa9.91□□□□□ -0.82
NUP54-216ENST00000514901 RHOHQ15669 191 aa9.91□□□□□ -0.82
NUP54-216ENST00000514901 UFSP1Q6NVU6 142 aa9.91□□□□□ -0.82
NUP54-216ENST00000514901 WDR73Q6P4I2 378 aa9.91□□□□□ -0.82
NUP54-216ENST00000514901 OR10AG1Q8NH19 301 aa9.91□□□□□ -0.82
NUP54-216ENST00000514901 NAT8Q9UHE5 227 aa9.91□□□□□ -0.82
NUP54-216ENST00000514901 IGHV3-73A0A0B4J1V6 119 aa9.9□□□□□ -0.82
NUP54-216ENST00000514901 A8MWL6 223 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 125.4 ms