RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 IGHV3-16A0A0C4DH30 117 aa14.38□□□□□ -0.11
USP53-208ENST00000514305 C19orf71A6NCJ1 209 aa14.38□□□□□ -0.11
USP53-208ENST00000514305 ERVFC1-1P60608 527 aa14.38□□□□□ -0.11
USP53-208ENST00000514305 FAM231DQ6ZW35 169 aa14.38□□□□□ -0.11
USP53-208ENST00000514305 C15orf54Q8N8G6 183 aa14.38□□□□□ -0.11
USP53-208ENST00000514305 PLAC8L1A1L4L8 177 aa14.37□□□□□ -0.11
USP53-208ENST00000514305 PNRC1Q12796 327 aaPredicted RBP14.37□□□□□ -0.11
USP53-208ENST00000514305 OR2D3Q8NGH3 330 aa14.37□□□□□ -0.11
USP53-208ENST00000514305 NDUFAF3Q9BU61 184 aa14.37□□□□□ -0.11
USP53-208ENST00000514305 MDFICQ9P1T7 246 aa14.37□□□□□ -0.11
USP53-208ENST00000514305 M0R2P5 195 aa14.36□□□□□ -0.11
USP53-208ENST00000514305 GATCO43716 136 aaKnown RBP14.36□□□□□ -0.11
USP53-208ENST00000514305 MED14OSP0DP75 135 aa14.36□□□□□ -0.11
USP53-208ENST00000514305 ADIRFQ15847 76 aa14.36□□□□□ -0.11
USP53-208ENST00000514305 NUDT10Q8NFP7 164 aa14.36□□□□□ -0.11
USP53-208ENST00000514305 NUDT11Q96G61 164 aa14.36□□□□□ -0.11
USP53-208ENST00000514305 IL36BQ9NZH7 164 aa14.36□□□□□ -0.11
USP53-208ENST00000514305 TMSB15BA0A087X1C1 80 aa14.35□□□□□ -0.11
USP53-208ENST00000514305 TRGV1A0A0A0MS02 117 aa14.35□□□□□ -0.11
USP53-208ENST00000514305 TMEM218A2RU14 115 aa14.35□□□□□ -0.11
USP53-208ENST00000514305 K7EN84 100 aa14.35□□□□□ -0.11
USP53-208ENST00000514305 SPINK4O60575 86 aa14.35□□□□□ -0.11
USP53-208ENST00000514305 SYT8Q8NBV8 401 aa14.35□□□□□ -0.11
USP53-208ENST00000514305 RPP21Q9H633 154 aaKnown RBP14.35□□□□□ -0.11
USP53-208ENST00000514305 OSTCQ9NRP0 149 aa14.35□□□□□ -0.11
USP53-208ENST00000514305 TRGV2A0A075B6R0 118 aa14.34□□□□□ -0.11
USP53-208ENST00000514305 F8W036 122 aa14.34□□□□□ -0.11
USP53-208ENST00000514305 DEFB130BP0DP73 79 aa14.34□□□□□ -0.11
USP53-208ENST00000514305 DEFB130AP0DP74 79 aa14.34□□□□□ -0.11
USP53-208ENST00000514305 NANOS2P60321 138 aaKnown RBP14.34□□□□□ -0.11
USP53-208ENST00000514305 RPL23P62829 140 aaKnown RBP14.34□□□□□ -0.11
USP53-208ENST00000514305 PIK3CD-AS1Q5SR53 167 aa14.34□□□□□ -0.11
USP53-208ENST00000514305 PTH2Q96A98 100 aa14.34□□□□□ -0.11
USP53-208ENST00000514305 PHLDA3Q9Y5J5 127 aa14.34□□□□□ -0.11
USP53-208ENST00000514305 A0A1W2PPQ1 181 aa14.33□□□□□ -0.12
USP53-208ENST00000514305 GRIFINA4D1Z8 144 aa14.33□□□□□ -0.12
USP53-208ENST00000514305 A8MWL6 223 aa14.33□□□□□ -0.12
USP53-208ENST00000514305 ARMS2P0C7Q2 107 aa14.33□□□□□ -0.12
USP53-208ENST00000514305 C9orf85Q96MD7 179 aa14.33□□□□□ -0.12
USP53-208ENST00000514305 RNASE7Q9H1E1 156 aaKnown RBP14.33□□□□□ -0.12
USP53-208ENST00000514305 CELA1Q9UNI1 258 aa14.33□□□□□ -0.12
USP53-208ENST00000514305 TRAV10A0A0B4J240 114 aa14.32□□□□□ -0.12
USP53-208ENST00000514305 GAGE12BA1L429 117 aa14.32□□□□□ -0.12
USP53-208ENST00000514305 F2Z2F3 143 aa14.32□□□□□ -0.12
USP53-208ENST00000514305 GAGE7O76087 117 aa14.32□□□□□ -0.12
USP53-208ENST00000514305 GAGE12FP0CL80 117 aa14.32□□□□□ -0.12
USP53-208ENST00000514305 GAGE12GP0CL81 117 aa14.32□□□□□ -0.12
USP53-208ENST00000514305 GAGE12IP0CL82 117 aa14.32□□□□□ -0.12
USP53-208ENST00000514305 NDUFA5Q16718 116 aa14.32□□□□□ -0.12
USP53-208ENST00000514305 C12orf74Q32Q52 190 aa14.32□□□□□ -0.12
USP53-208ENST00000514305 CT83Q5H943 113 aa14.32□□□□□ -0.12
USP53-208ENST00000514305 LGALS9CQ6DKI2 356 aa14.32□□□□□ -0.12
USP53-208ENST00000514305 RASL10AQ92737 203 aa14.32□□□□□ -0.12
USP53-208ENST00000514305 ISOC2Q96AB3 205 aa14.32□□□□□ -0.12
USP53-208ENST00000514305 SEC11CQ9BY50 192 aa14.32□□□□□ -0.12
USP53-208ENST00000514305 H3BVH4 76 aa14.31□□□□□ -0.12
USP53-208ENST00000514305 PPP1R2P9O14990 202 aa14.31□□□□□ -0.12
USP53-208ENST00000514305 CIDEAO60543 219 aa14.31□□□□□ -0.12
USP53-208ENST00000514305 ATP5G1P05496 136 aa14.31□□□□□ -0.12
USP53-208ENST00000514305 RNASE3P12724 160 aaKnown RBP14.31□□□□□ -0.12
USP53-208ENST00000514305 RPL19P84098 196 aaKnown RBP14.31□□□□□ -0.12
USP53-208ENST00000514305 OR10G8Q8NGN5 311 aa14.31□□□□□ -0.12
USP53-208ENST00000514305 SFRP2Q96HF1 295 aa14.31□□□□□ -0.12
USP53-208ENST00000514305 C18orf15Q96N68 181 aa14.31□□□□□ -0.12
USP53-208ENST00000514305 OR5AL1P0C617 328 aa14.3□□□□□ -0.12
USP53-208ENST00000514305 ZNF876PQ49A33 203 aa14.3□□□□□ -0.12
USP53-208ENST00000514305 ZFP82Q8N141 532 aa14.3□□□□□ -0.12
USP53-208ENST00000514305 LINC00612Q8N6U2 182 aa14.3□□□□□ -0.12
USP53-208ENST00000514305 FER1L6-AS1Q8NA97 138 aa14.3□□□□□ -0.12
USP53-208ENST00000514305 Q6ZTI0 123 aa14.29□□□□□ -0.12
USP53-208ENST00000514305 MRPL16Q9NX20 251 aaKnown RBP14.29□□□□□ -0.12
USP53-208ENST00000514305 FAM231BA6NCW3 169 aa14.28□□□□□ -0.12
USP53-208ENST00000514305 TCTAP57738 103 aa14.28□□□□□ -0.12
USP53-208ENST00000514305 CACNG7P62955 275 aa14.28□□□□□ -0.12
USP53-208ENST00000514305 SLAQ13239 276 aa14.28□□□□□ -0.12
USP53-208ENST00000514305 SPANXN1Q5VSR9 72 aa14.28□□□□□ -0.12
USP53-208ENST00000514305 Q6ZTC4 211 aa14.28□□□□□ -0.12
USP53-208ENST00000514305 BORCS7Q96B45 105 aa14.28□□□□□ -0.12
USP53-208ENST00000514305 SSBP4Q9BWG4 385 aaPredicted RBP14.28□□□□□ -0.12
USP53-208ENST00000514305 SCRT2Q9NQ03 307 aa14.28□□□□□ -0.12
USP53-208ENST00000514305 KMT2AQ03164 3969 aa14.27□□□□□ -0.12
USP53-208ENST00000514305 DEFB131BA0A096LNP1 70 aa14.27□□□□□ -0.13
USP53-208ENST00000514305 A8MWV9 139 aa14.27□□□□□ -0.13
USP53-208ENST00000514305 SNAI2O43623 268 aa14.27□□□□□ -0.13
USP53-208ENST00000514305 MT-ND4LP03901 98 aa14.27□□□□□ -0.13
USP53-208ENST00000514305 ANAPC16Q96DE5 110 aa14.27□□□□□ -0.13
USP53-208ENST00000514305 TPPP3Q9BW30 176 aa14.27□□□□□ -0.13
USP53-208ENST00000514305 GFRA4Q9GZZ7 299 aa14.27□□□□□ -0.13
USP53-208ENST00000514305 TRAV4A0A0B4J268 109 aa14.26□□□□□ -0.13
USP53-208ENST00000514305 WDR73Q6P4I2 378 aa14.26□□□□□ -0.13
USP53-208ENST00000514305 OR4C5Q8NGB2 326 aa14.26□□□□□ -0.13
USP53-208ENST00000514305 TSKUQ8WUA8 353 aa14.26□□□□□ -0.13
USP53-208ENST00000514305 FAM210BQ96KR6 192 aa14.26□□□□□ -0.13
USP53-208ENST00000514305 M0R381 172 aa14.24□□□□□ -0.13
USP53-208ENST00000514305 IGLC6P0CF74 106 aa14.24□□□□□ -0.13
USP53-208ENST00000514305 HTN3P15516 51 aa14.24□□□□□ -0.13
USP53-208ENST00000514305 FRAS1Q86XX4 4008 aa14.24□□□□□ -0.13
USP53-208ENST00000514305 IGLL5B9A064 214 aa14.23□□□□□ -0.13
USP53-208ENST00000514305 F5H768 121 aa14.23□□□□□ -0.13
USP53-208ENST00000514305 GZMBP10144 247 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms