RNA–Protein interactions for RNA: ENST00000512340.5

NR1I3-231, Transcript of nuclear receptor subfamily 1 group I member 3, human

TSL 1 (best)

Gene NR1I3, Length 891 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1I3-231	ENST00000512340	SNAI2	O43623	268 aa		5.4	□□□□□ -1.54
NR1I3-231	ENST00000512340	PDE6D	O43924	150 aa		5.4	□□□□□ -1.54
NR1I3-231	ENST00000512340	SMIM17	P0DL12	118 aa		5.4	□□□□□ -1.54
NR1I3-231	ENST00000512340	CT45A10	P0DMU9	189 aa		5.4	□□□□□ -1.54
NR1I3-231	ENST00000512340	DAD1	P61803	113 aa		5.4	□□□□□ -1.54
NR1I3-231	ENST00000512340	UBE2G1	P62253	170 aa		5.4	□□□□□ -1.54
NR1I3-231	ENST00000512340	ERCC8	Q13216	396 aa		5.4	□□□□□ -1.54
NR1I3-231	ENST00000512340	PMS2P11	Q13670	270 aa		5.4	□□□□□ -1.54
NR1I3-231	ENST00000512340	CASC10	Q5T4H9	136 aa		5.4	□□□□□ -1.54
NR1I3-231	ENST00000512340	ZFAND6	Q6FIF0	208 aa		5.4	□□□□□ -1.54
NR1I3-231	ENST00000512340	CEMP1	Q6PRD7	247 aa	Predicted RBP	5.4	□□□□□ -1.54
NR1I3-231	ENST00000512340	FAM159A	Q6UWV7	190 aa		5.4	□□□□□ -1.54
NR1I3-231	ENST00000512340	NIT1	Q86X76	327 aa		5.4	□□□□□ -1.54
NR1I3-231	ENST00000512340	C1orf158	Q8N1D5	194 aa		5.4	□□□□□ -1.54
NR1I3-231	ENST00000512340	CYB561D1	Q8N8Q1	229 aa		5.4	□□□□□ -1.54
NR1I3-231	ENST00000512340	TMEM263	Q8WUH6	116 aa	Known RBP	5.4	□□□□□ -1.54
NR1I3-231	ENST00000512340	MBD3L1	Q8WWY6	194 aa		5.4	□□□□□ -1.54
NR1I3-231	ENST00000512340	SIGMAR1	Q99720	223 aa		5.4	□□□□□ -1.54
NR1I3-231	ENST00000512340	MANBAL	Q9NQG1	85 aa		5.4	□□□□□ -1.54
NR1I3-231	ENST00000512340	TIMM8B	Q9Y5J9	83 aa	Predicted RBP	5.4	□□□□□ -1.54
NR1I3-231	ENST00000512340	TRAV21	A0A0B4J279	112 aa		5.39	□□□□□ -1.55
NR1I3-231	ENST00000512340	C7orf77	A4D0Y5	90 aa		5.39	□□□□□ -1.55
NR1I3-231	ENST00000512340	ZNF705G	A8MUZ8	300 aa	Predicted RBP	5.39	□□□□□ -1.55
NR1I3-231	ENST00000512340	KLLN	B2CW77	178 aa		5.39	□□□□□ -1.55
NR1I3-231	ENST00000512340	CRX	O43186	299 aa	Predicted RBP	5.39	□□□□□ -1.55
NR1I3-231	ENST00000512340	HIST1H2BK	O60814	126 aa		5.39	□□□□□ -1.55
NR1I3-231	ENST00000512340	TCRA	P04437	139 aa		5.39	□□□□□ -1.55
NR1I3-231	ENST00000512340	HIST1H2BJ	P06899	126 aa		5.39	□□□□□ -1.55
NR1I3-231	ENST00000512340	RBMY1A1	P0DJD3	496 aa	Known RBP	5.39	□□□□□ -1.55
NR1I3-231	ENST00000512340	RBMY1C	P0DJD4	496 aa		5.39	□□□□□ -1.55
NR1I3-231	ENST00000512340	HIST1H2BO	P23527	126 aa		5.39	□□□□□ -1.55
NR1I3-231	ENST00000512340	HIST1H2BB	P33778	126 aa		5.39	□□□□□ -1.55
NR1I3-231	ENST00000512340	HIST1H2BD	P58876	126 aa		5.39	□□□□□ -1.55
NR1I3-231	ENST00000512340	HIST1H2BC	P62807	126 aa		5.39	□□□□□ -1.55
NR1I3-231	ENST00000512340	RBMY1F	Q15415	496 aa	Known RBP	5.39	□□□□□ -1.55
NR1I3-231	ENST00000512340	HIST2H2BE	Q16778	126 aa		5.39	□□□□□ -1.55
NR1I3-231	ENST00000512340	HIST2H2BF	Q5QNW6	126 aa	Predicted RBP	5.39	□□□□□ -1.55
NR1I3-231	ENST00000512340	GFI1B	Q5VTD9	330 aa		5.39	□□□□□ -1.55
NR1I3-231	ENST00000512340	TMEM75	Q8N9X5	138 aa		5.39	□□□□□ -1.55
NR1I3-231	ENST00000512340	PHLDA1	Q8WV24	401 aa	Predicted RBP	5.39	□□□□□ -1.55
NR1I3-231	ENST00000512340	HIST1H2BH	Q93079	126 aa		5.39	□□□□□ -1.55
NR1I3-231	ENST00000512340	PTH2	Q96A98	100 aa		5.39	□□□□□ -1.55
NR1I3-231	ENST00000512340	ISOC2	Q96AB3	205 aa		5.39	□□□□□ -1.55
NR1I3-231	ENST00000512340	KCNS1	Q96KK3	526 aa		5.39	□□□□□ -1.55
NR1I3-231	ENST00000512340	HIST1H2BN	Q99877	126 aa		5.39	□□□□□ -1.55
NR1I3-231	ENST00000512340	HIST1H2BM	Q99879	126 aa		5.39	□□□□□ -1.55
NR1I3-231	ENST00000512340	VGLL1	Q99990	258 aa		5.39	□□□□□ -1.55
NR1I3-231	ENST00000512340	LINC00467	Q9BRT7	94 aa		5.39	□□□□□ -1.55
NR1I3-231	ENST00000512340	NAT8	Q9UHE5	227 aa		5.39	□□□□□ -1.55
NR1I3-231	ENST00000512340	DNAH9	Q9NYC9	4486 aa		5.38	□□□□□ -1.55
NR1I3-231	ENST00000512340	TRGV11	A0A075B6L2	103 aa		5.38	□□□□□ -1.55
NR1I3-231	ENST00000512340	TRAV1-1	A0A0B4J248	108 aa		5.38	□□□□□ -1.55
NR1I3-231	ENST00000512340	PEX7	O00628	323 aa		5.38	□□□□□ -1.55
NR1I3-231	ENST00000512340	RPS10	P46783	165 aa	Known RBP	5.38	□□□□□ -1.55
NR1I3-231	ENST00000512340	SULT1A2	P50226	295 aa		5.38	□□□□□ -1.55
NR1I3-231	ENST00000512340	NANOS2	P60321	138 aa	Known RBP	5.38	□□□□□ -1.55
NR1I3-231	ENST00000512340	ZNF415	Q09FC8	603 aa		5.38	□□□□□ -1.55
NR1I3-231	ENST00000512340	ANXA2R	Q3ZCQ2	193 aa		5.38	□□□□□ -1.55
NR1I3-231	ENST00000512340	FAM222A	Q5U5X8	452 aa		5.38	□□□□□ -1.55
NR1I3-231	ENST00000512340	FMC1	Q96HJ9	113 aa		5.38	□□□□□ -1.55
NR1I3-231	ENST00000512340	DKK2	Q9UBU2	259 aa		5.38	□□□□□ -1.55
NR1I3-231	ENST00000512340	PSG8	Q9UQ74	426 aa		5.38	□□□□□ -1.55
NR1I3-231	ENST00000512340	YTHDF2	Q9Y5A9	579 aa	Known RBP	5.38	□□□□□ -1.55
NR1I3-231	ENST00000512340	IGHV1OR15-1	A0A075B7D0	117 aa		5.37	□□□□□ -1.55
NR1I3-231	ENST00000512340		A0A087WWC5	75 aa		5.37	□□□□□ -1.55
NR1I3-231	ENST00000512340	DEFB131B	A0A096LNP1	70 aa		5.37	□□□□□ -1.55
NR1I3-231	ENST00000512340	GGTLC3	B5MD39	225 aa		5.37	□□□□□ -1.55
NR1I3-231	ENST00000512340	PAGE4	O60829	102 aa		5.37	□□□□□ -1.55
NR1I3-231	ENST00000512340	SFTA3	P0C7M3	94 aa		5.37	□□□□□ -1.55
NR1I3-231	ENST00000512340	ESD	P10768	282 aa		5.37	□□□□□ -1.55
NR1I3-231	ENST00000512340	RPL32	P62910	135 aa	Known RBP	5.37	□□□□□ -1.55
NR1I3-231	ENST00000512340	ZNF726P1	Q15940	193 aa		5.37	□□□□□ -1.55
NR1I3-231	ENST00000512340	IBA57	Q5T440	356 aa	Known RBP	5.37	□□□□□ -1.55
NR1I3-231	ENST00000512340	PRNT	Q86SH4	94 aa		5.37	□□□□□ -1.55
NR1I3-231	ENST00000512340		Q8TAT8	98 aa		5.37	□□□□□ -1.55
NR1I3-231	ENST00000512340	TMEM18	Q96B42	140 aa		5.37	□□□□□ -1.55
NR1I3-231	ENST00000512340	FAM19A4	Q96LR4	140 aa		5.37	□□□□□ -1.55
NR1I3-231	ENST00000512340	SDF2L1	Q9HCN8	221 aa		5.37	□□□□□ -1.55
NR1I3-231	ENST00000512340	RYR2	Q92736	4967 aa		5.36	□□□□□ -1.55
NR1I3-231	ENST00000512340	TRGV2	A0A075B6R0	118 aa		5.36	□□□□□ -1.55
NR1I3-231	ENST00000512340	LCE6A	A0A183	80 aa		5.36	□□□□□ -1.55
NR1I3-231	ENST00000512340		A0A1B0GV50	99 aa		5.36	□□□□□ -1.55
NR1I3-231	ENST00000512340	FABP5P3	A8MUU1	101 aa		5.36	□□□□□ -1.55
NR1I3-231	ENST00000512340	ZNF324	O75467	553 aa	Predicted RBP	5.36	□□□□□ -1.55
NR1I3-231	ENST00000512340	ATP5G1	P05496	136 aa		5.36	□□□□□ -1.55
NR1I3-231	ENST00000512340	DEFB130B	P0DP73	79 aa		5.36	□□□□□ -1.55
NR1I3-231	ENST00000512340	DEFB130A	P0DP74	79 aa		5.36	□□□□□ -1.55
NR1I3-231	ENST00000512340	ATP5G3	P48201	142 aa		5.36	□□□□□ -1.55
NR1I3-231	ENST00000512340	GNG5	P63218	68 aa		5.36	□□□□□ -1.55
NR1I3-231	ENST00000512340	GAGE5	Q13069	117 aa		5.36	□□□□□ -1.55
NR1I3-231	ENST00000512340	GAGE6	Q13070	117 aa		5.36	□□□□□ -1.55
NR1I3-231	ENST00000512340	DAZ2	Q13117	558 aa	Known RBP	5.36	□□□□□ -1.55
NR1I3-231	ENST00000512340		Q6AWC8	147 aa		5.36	□□□□□ -1.55
NR1I3-231	ENST00000512340	ZFAND2A	Q8N6M9	145 aa		5.36	□□□□□ -1.55
NR1I3-231	ENST00000512340	NOP10	Q9NPE3	64 aa	Known RBP	5.36	□□□□□ -1.55
NR1I3-231	ENST00000512340	GNG13	Q9P2W3	67 aa		5.36	□□□□□ -1.55
NR1I3-231	ENST00000512340	EPPK1	P58107	5090 aa	Known RBP	5.35	□□□□□ -1.55
NR1I3-231	ENST00000512340	IGLL5	B9A064	214 aa		5.35	□□□□□ -1.55
NR1I3-231	ENST00000512340	PFN1	P07737	140 aa	Known RBP	5.35	□□□□□ -1.55
NR1I3-231	ENST00000512340	PRB4	P10163	310 aa	Predicted RBP	5.35	□□□□□ -1.55

Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms