RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 JPT2Q9H910 190 aa9.54□□□□□ -0.88
SYNE1-226ENST00000488376 GNG13Q9P2W3 67 aa9.54□□□□□ -0.88
SYNE1-226ENST00000488376 ZFP30Q9Y2G7 519 aa9.54□□□□□ -0.88
SYNE1-226ENST00000488376 TMSB15BA0A087X1C1 80 aa9.53□□□□□ -0.88
SYNE1-226ENST00000488376 B4DEV8 164 aa9.53□□□□□ -0.88
SYNE1-226ENST00000488376 H3BVH4 76 aa9.53□□□□□ -0.88
SYNE1-226ENST00000488376 RS1O15537 224 aa9.53□□□□□ -0.88
SYNE1-226ENST00000488376 NXPH4O95158 308 aa9.53□□□□□ -0.88
SYNE1-226ENST00000488376 GATA1P15976 413 aaPredicted RBP9.53□□□□□ -0.88
SYNE1-226ENST00000488376 SULT1A2P50226 295 aa9.53□□□□□ -0.88
SYNE1-226ENST00000488376 SLAQ13239 276 aa9.53□□□□□ -0.88
SYNE1-226ENST00000488376 ZNF674Q2M3X9 581 aa9.53□□□□□ -0.88
SYNE1-226ENST00000488376 FAM162BQ5T6X4 162 aa9.53□□□□□ -0.88
SYNE1-226ENST00000488376 LYPD5Q6UWN5 251 aa9.53□□□□□ -0.88
SYNE1-226ENST00000488376 Q6ZSN1 163 aa9.53□□□□□ -0.88
SYNE1-226ENST00000488376 DERL1Q9BUN8 251 aa9.53□□□□□ -0.88
SYNE1-226ENST00000488376 TRAV1-1A0A0B4J248 108 aa9.52□□□□□ -0.89
SYNE1-226ENST00000488376 ASIPP42127 132 aa9.52□□□□□ -0.89
SYNE1-226ENST00000488376 TNP2Q05952 138 aa9.52□□□□□ -0.89
SYNE1-226ENST00000488376 MRPL23Q16540 153 aaKnown RBP9.52□□□□□ -0.89
SYNE1-226ENST00000488376 C6orf223Q8N319 242 aa9.52□□□□□ -0.89
SYNE1-226ENST00000488376 SLC25A29Q8N8R3 303 aa9.52□□□□□ -0.89
SYNE1-226ENST00000488376 S100A4P26447 101 aaKnown RBP9.51□□□□□ -0.89
SYNE1-226ENST00000488376 SRIP30626 198 aa9.51□□□□□ -0.89
SYNE1-226ENST00000488376 RPL19P84098 196 aaKnown RBP9.51□□□□□ -0.89
SYNE1-226ENST00000488376 NEGR1Q7Z3B1 354 aa9.51□□□□□ -0.89
SYNE1-226ENST00000488376 SLC51BQ86UW2 128 aa9.51□□□□□ -0.89
SYNE1-226ENST00000488376 PTH2Q96A98 100 aa9.51□□□□□ -0.89
SYNE1-226ENST00000488376 SAMD10Q9BYL1 202 aa9.51□□□□□ -0.89
SYNE1-226ENST00000488376 DNAH17Q9UFH2 4485 aa9.5□□□□□ -0.89
SYNE1-226ENST00000488376 ARMS2P0C7Q2 107 aa9.5□□□□□ -0.89
SYNE1-226ENST00000488376 RAB5CP51148 216 aa9.5□□□□□ -0.89
SYNE1-226ENST00000488376 NKX2-5P52952 324 aaPredicted RBP9.5□□□□□ -0.89
SYNE1-226ENST00000488376 LINC01559Q495D7 138 aa9.5□□□□□ -0.89
SYNE1-226ENST00000488376 DMRTA1Q5VZB9 504 aa9.5□□□□□ -0.89
SYNE1-226ENST00000488376 WFDC10BQ8IUB3 73 aa9.5□□□□□ -0.89
SYNE1-226ENST00000488376 PCNPQ8WW12 178 aaKnown RBP9.5□□□□□ -0.89
SYNE1-226ENST00000488376 MLST8Q9BVC4 326 aa9.5□□□□□ -0.89
SYNE1-226ENST00000488376 PARLQ9H300 379 aa9.5□□□□□ -0.89
SYNE1-226ENST00000488376 IL36BQ9NZH7 164 aa9.5□□□□□ -0.89
SYNE1-226ENST00000488376 Q9UF83 564 aa9.5□□□□□ -0.89
SYNE1-226ENST00000488376 SIVA1O15304 175 aa9.49□□□□□ -0.89
SYNE1-226ENST00000488376 RPL35P42766 123 aaKnown RBP9.49□□□□□ -0.89
SYNE1-226ENST00000488376 SOHLH1Q5JUK2 328 aa9.49□□□□□ -0.89
SYNE1-226ENST00000488376 DNLZQ5SXM8 178 aa9.49□□□□□ -0.89
SYNE1-226ENST00000488376 EIF5AL1Q6IS14 154 aaKnown RBP9.49□□□□□ -0.89
SYNE1-226ENST00000488376 UFSP1Q6NVU6 142 aa9.49□□□□□ -0.89
SYNE1-226ENST00000488376 BAGE2Q86Y30 109 aa9.49□□□□□ -0.89
SYNE1-226ENST00000488376 C11orf52Q96A22 123 aa9.49□□□□□ -0.89
SYNE1-226ENST00000488376 MANBALQ9NQG1 85 aa9.49□□□□□ -0.89
SYNE1-226ENST00000488376 TNFRSF18Q9Y5U5 241 aa9.49□□□□□ -0.89
SYNE1-226ENST00000488376 PRR27Q6MZM9 219 aa9.48□□□□□ -0.89
SYNE1-226ENST00000488376 SCRT2Q9NQ03 307 aa9.48□□□□□ -0.89
SYNE1-226ENST00000488376 BOLA1Q9Y3E2 137 aa9.48□□□□□ -0.89
SYNE1-226ENST00000488376 RAB19A4D1S5 217 aa9.47□□□□□ -0.89
SYNE1-226ENST00000488376 S100A9P06702 114 aaKnown RBP9.47□□□□□ -0.89
SYNE1-226ENST00000488376 LINC00315P59091 139 aa9.47□□□□□ -0.89
SYNE1-226ENST00000488376 TTC32Q5I0X7 151 aa9.47□□□□□ -0.89
SYNE1-226ENST00000488376 ALKAL2Q6UX46 152 aa9.47□□□□□ -0.89
SYNE1-226ENST00000488376 PKD1P98161 4303 aa9.47□□□□□ -0.89
SYNE1-226ENST00000488376 A0A087WWL8 130 aa9.46□□□□□ -0.9
SYNE1-226ENST00000488376 MUC21A0A0G2JKD1 596 aa9.46□□□□□ -0.9
SYNE1-226ENST00000488376 MUC21A0A140T8X8 626 aa9.46□□□□□ -0.9
SYNE1-226ENST00000488376 TRBV6-4A0A1B0GX49 114 aa9.46□□□□□ -0.9
SYNE1-226ENST00000488376 M0R381 172 aa9.46□□□□□ -0.9
SYNE1-226ENST00000488376 IGLV2-8P01709 118 aa9.46□□□□□ -0.9
SYNE1-226ENST00000488376 CENPWQ5EE01 88 aa9.46□□□□□ -0.9
SYNE1-226ENST00000488376 C14orf178Q8N769 122 aaPredicted RBP9.46□□□□□ -0.9
SYNE1-226ENST00000488376 TXNDC17Q9BRA2 123 aa9.46□□□□□ -0.9
SYNE1-226ENST00000488376 TRBV20OR9-2A0A075B6H5 130 aa9.45□□□□□ -0.9
SYNE1-226ENST00000488376 A0A1W2PPQ1 181 aa9.45□□□□□ -0.9
SYNE1-226ENST00000488376 A8MWV9 139 aa9.45□□□□□ -0.9
SYNE1-226ENST00000488376 BCL2P10415 239 aa9.45□□□□□ -0.9
SYNE1-226ENST00000488376 MEF2BQ02080 365 aaPredicted RBP9.45□□□□□ -0.9
SYNE1-226ENST00000488376 RHOHQ15669 191 aa9.45□□□□□ -0.9
SYNE1-226ENST00000488376 Q6ZRN7 208 aaPredicted RBP9.45□□□□□ -0.9
SYNE1-226ENST00000488376 OR10AG1Q8NH19 301 aa9.45□□□□□ -0.9
SYNE1-226ENST00000488376 PKHD1P08F94 4074 aa9.45□□□□□ -0.9
SYNE1-226ENST00000488376 CRYGDP07320 174 aa9.44□□□□□ -0.9
SYNE1-226ENST00000488376 MGST1P10620 155 aaKnown RBP9.44□□□□□ -0.9
SYNE1-226ENST00000488376 PIK3CD-AS1Q5SR53 167 aa9.44□□□□□ -0.9
SYNE1-226ENST00000488376 FAM74A4Q5TZK3 123 aa9.44□□□□□ -0.9
SYNE1-226ENST00000488376 ZFP2Q6ZN57 461 aa9.44□□□□□ -0.9
SYNE1-226ENST00000488376 PRADC1Q9BSG0 188 aa9.44□□□□□ -0.9
SYNE1-226ENST00000488376 PHLDA3Q9Y5J5 127 aa9.44□□□□□ -0.9
SYNE1-226ENST00000488376 GAGE12JA6NER3 117 aa9.43□□□□□ -0.9
SYNE1-226ENST00000488376 TEX46H3BTG2 121 aa9.43□□□□□ -0.9
SYNE1-226ENST00000488376 CIDEAO60543 219 aa9.43□□□□□ -0.9
SYNE1-226ENST00000488376 LINC00694P0DN24 101 aa9.43□□□□□ -0.9
SYNE1-226ENST00000488376 GAGE1Q13065 139 aa9.43□□□□□ -0.9
SYNE1-226ENST00000488376 GAGE4Q13068 117 aa9.43□□□□□ -0.9
SYNE1-226ENST00000488376 GAGE5Q13069 117 aa9.43□□□□□ -0.9
SYNE1-226ENST00000488376 GAGE13Q4V321 117 aa9.43□□□□□ -0.9
SYNE1-226ENST00000488376 SYT8Q8NBV8 401 aa9.43□□□□□ -0.9
SYNE1-226ENST00000488376 SFRP2Q96HF1 295 aa9.43□□□□□ -0.9
SYNE1-226ENST00000488376 GZMBP10144 247 aa9.42□□□□□ -0.9
SYNE1-226ENST00000488376 SSTP61278 116 aa9.42□□□□□ -0.9
SYNE1-226ENST00000488376 Q8N3U1 123 aa9.42□□□□□ -0.9
SYNE1-226ENST00000488376 MED9Q9NWA0 146 aa9.42□□□□□ -0.9
SYNE1-226ENST00000488376 VAX2Q9UIW0 290 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms