RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 AMTNQ6UX39 209 aa8.58□□□□□ -1.04
HDAC6-228ENST00000486227 MYMXA0A1B0GTQ4 84 aa8.58□□□□□ -1.04
HDAC6-228ENST00000486227 CD28P10747 220 aa8.58□□□□□ -1.04
HDAC6-228ENST00000486227 LOXL1Q08397 574 aaPredicted RBP8.58□□□□□ -1.04
HDAC6-228ENST00000486227 PSCAO43653 123 aa8.58□□□□□ -1.04
HDAC6-228ENST00000486227 LGALS1P09382 135 aaKnown RBP8.58□□□□□ -1.04
HDAC6-228ENST00000486227 BOD1L2Q8IYS8 172 aa8.58□□□□□ -1.04
HDAC6-228ENST00000486227 DYNAPQ8N1N2 210 aa8.58□□□□□ -1.04
HDAC6-228ENST00000486227 SIRPDQ9H106 197 aa8.58□□□□□ -1.04
HDAC6-228ENST00000486227 TRAV12-2A0A075B6T6 113 aa8.58□□□□□ -1.04
HDAC6-228ENST00000486227 F6UB75 175 aa8.58□□□□□ -1.04
HDAC6-228ENST00000486227 ATXN8Q156A1 80 aa8.58□□□□□ -1.04
HDAC6-228ENST00000486227 AGPAT4-IT1Q9H0P7 198 aa8.58□□□□□ -1.04
HDAC6-228ENST00000486227 KLK9Q9UKQ9 250 aa8.58□□□□□ -1.04
HDAC6-228ENST00000486227 KLF12Q9Y4X4 402 aa8.58□□□□□ -1.04
HDAC6-228ENST00000486227 INS-IGF2F8WCM5 200 aa8.57□□□□□ -1.04
HDAC6-228ENST00000486227 DNAL4O96015 105 aa8.57□□□□□ -1.04
HDAC6-228ENST00000486227 FOXE3Q13461 319 aa8.57□□□□□ -1.04
HDAC6-228ENST00000486227 KNCNA6PVL3 124 aa8.57□□□□□ -1.04
HDAC6-228ENST00000486227 C9JAW5 83 aa8.57□□□□□ -1.04
HDAC6-228ENST00000486227 VCYO14598 125 aa8.57□□□□□ -1.04
HDAC6-228ENST00000486227 HOXD3P31249 432 aaPredicted RBP8.57□□□□□ -1.04
HDAC6-228ENST00000486227 ANXA2RQ3ZCQ2 193 aa8.57□□□□□ -1.04
HDAC6-228ENST00000486227 GTSF1Q8WW33 167 aa8.57□□□□□ -1.04
HDAC6-228ENST00000486227 F5H768 121 aa8.57□□□□□ -1.04
HDAC6-228ENST00000486227 LMO4P61968 165 aa8.57□□□□□ -1.04
HDAC6-228ENST00000486227 C5orf56Q8N8D9 126 aa8.56□□□□□ -1.04
HDAC6-228ENST00000486227 TRBV25-1A0A075B6N4 114 aa8.56□□□□□ -1.04
HDAC6-228ENST00000486227 A0A1B0GXF2 115 aa8.56□□□□□ -1.04
HDAC6-228ENST00000486227 F8VRH5 84 aa8.56□□□□□ -1.04
HDAC6-228ENST00000486227 IGLV2-8P01709 118 aa8.56□□□□□ -1.04
HDAC6-228ENST00000486227 EIF4EBP1Q13541 118 aaPredicted RBP8.56□□□□□ -1.04
HDAC6-228ENST00000486227 SPATA12Q7Z6I5 190 aa8.56□□□□□ -1.04
HDAC6-228ENST00000486227 PLEKHB2Q96CS7 222 aa8.56□□□□□ -1.04
HDAC6-228ENST00000486227 HIGD1BQ9P298 99 aa8.56□□□□□ -1.04
HDAC6-228ENST00000486227 IGLL5B9A064 214 aa8.56□□□□□ -1.04
HDAC6-228ENST00000486227 ARHGAP32A7KAX9 2087 aa8.56□□□□□ -1.04
HDAC6-228ENST00000486227 ZFYVE26Q68DK2 2539 aa8.56□□□□□ -1.04
HDAC6-228ENST00000486227 C2CD3Q4AC94 2353 aa8.56□□□□□ -1.04
HDAC6-228ENST00000486227 C9orf66Q5T8R8 295 aa8.56□□□□□ -1.04
HDAC6-228ENST00000486227 FOXI2Q6ZQN5 318 aa8.56□□□□□ -1.04
HDAC6-228ENST00000486227 IGHV3-64A0A075B6Q5 118 aa8.55□□□□□ -1.04
HDAC6-228ENST00000486227 CRYGCP07315 174 aa8.55□□□□□ -1.04
HDAC6-228ENST00000486227 C5orf42Q9H799 3197 aa8.55□□□□□ -1.04
HDAC6-228ENST00000486227 KIAA1549Q9HCM3 1950 aa8.55□□□□□ -1.04
HDAC6-228ENST00000486227 JMJD1CQ15652 2540 aa8.55□□□□□ -1.04
HDAC6-228ENST00000486227 DEFB136Q30KP8 78 aa8.55□□□□□ -1.04
HDAC6-228ENST00000486227 C2orf82Q6UX34 121 aa8.55□□□□□ -1.04
HDAC6-228ENST00000486227 SH2D6Q7Z4S9 175 aa8.55□□□□□ -1.04
HDAC6-228ENST00000486227 LY6G5BQ8NDX9 201 aa8.55□□□□□ -1.04
HDAC6-228ENST00000486227 ZNF503Q96F45 646 aa8.55□□□□□ -1.04
HDAC6-228ENST00000486227 AJUBAQ96IF1 538 aa8.55□□□□□ -1.04
HDAC6-228ENST00000486227 RHODO00212 210 aa8.54□□□□□ -1.04
HDAC6-228ENST00000486227 RNASE1P07998 156 aaKnown RBP8.54□□□□□ -1.04
HDAC6-228ENST00000486227 EGR2P11161 476 aaPredicted RBP8.54□□□□□ -1.04
HDAC6-228ENST00000486227 FANCD2OSQ96PS1 177 aa8.54□□□□□ -1.04
HDAC6-228ENST00000486227 HLA-DRB4P13762 266 aa8.54□□□□□ -1.04
HDAC6-228ENST00000486227 FXYD2P54710 66 aa8.54□□□□□ -1.04
HDAC6-228ENST00000486227 MRAPQ8TCY5 172 aa8.54□□□□□ -1.04
HDAC6-228ENST00000486227 HLA-DRB4X5D2U9 266 aa8.54□□□□□ -1.04
HDAC6-228ENST00000486227 TRAV26-2A0A0B4J265 109 aa8.54□□□□□ -1.04
HDAC6-228ENST00000486227 M0R2P5 195 aa8.54□□□□□ -1.04
HDAC6-228ENST00000486227 BUB3O43684 328 aa8.54□□□□□ -1.04
HDAC6-228ENST00000486227 C2orf66Q6UXQ4 117 aa8.54□□□□□ -1.04
HDAC6-228ENST00000486227 FASNP49327 2511 aaKnown RBP8.54□□□□□ -1.04
HDAC6-228ENST00000486227 IGHV1OR15-1A0A075B7D0 117 aa8.54□□□□□ -1.04
HDAC6-228ENST00000486227 CLPSL1A2RUU4 121 aa8.54□□□□□ -1.04
HDAC6-228ENST00000486227 MBD6Q96DN6 1003 aa8.54□□□□□ -1.04
HDAC6-228ENST00000486227 GDF5OSQ5U4N7 250 aa8.53□□□□□ -1.04
HDAC6-228ENST00000486227 PHLDA1Q8WV24 401 aaPredicted RBP8.53□□□□□ -1.04
HDAC6-228ENST00000486227 IGKV1D-37A0A075B6S9 117 aa8.53□□□□□ -1.04
HDAC6-228ENST00000486227 LINC00310P59036 64 aa8.53□□□□□ -1.04
HDAC6-228ENST00000486227 WFDC2Q14508 124 aa8.53□□□□□ -1.04
HDAC6-228ENST00000486227 WFDC11Q8NEX6 87 aa8.53□□□□□ -1.04
HDAC6-228ENST00000486227 MKI67P46013 3256 aaKnown RBP8.53□□□□□ -1.04
HDAC6-228ENST00000486227 SETD2Q9BYW2 2564 aaPredicted RBP8.52□□□□□ -1.05
HDAC6-228ENST00000486227 C19orf71A6NCJ1 209 aa8.52□□□□□ -1.05
HDAC6-228ENST00000486227 SPRY2O43597 315 aa8.52□□□□□ -1.05
HDAC6-228ENST00000486227 CDSNQ15517 529 aa8.52□□□□□ -1.05
HDAC6-228ENST00000486227 SMIM2Q9BVW6 85 aa8.52□□□□□ -1.05
HDAC6-228ENST00000486227 A0A0U1RRA0 63 aa8.52□□□□□ -1.05
HDAC6-228ENST00000486227 ZNF462Q96JM2 2506 aa8.52□□□□□ -1.05
HDAC6-228ENST00000486227 SORL1Q92673 2214 aa8.52□□□□□ -1.05
HDAC6-228ENST00000486227 WI2-2373I1.2A0A1W2PRP0 233 aa8.51□□□□□ -1.05
HDAC6-228ENST00000486227 ODF3BA8MYP8 253 aa8.51□□□□□ -1.05
HDAC6-228ENST00000486227 GAGE5Q13069 117 aa8.51□□□□□ -1.05
HDAC6-228ENST00000486227 GAGE6Q13070 117 aa8.51□□□□□ -1.05
HDAC6-228ENST00000486227 TMEM86BQ8N661 226 aa8.51□□□□□ -1.05
HDAC6-228ENST00000486227 GAGE7O76087 117 aa8.51□□□□□ -1.05
HDAC6-228ENST00000486227 GAGE12FP0CL80 117 aa8.51□□□□□ -1.05
HDAC6-228ENST00000486227 GAGE12GP0CL81 117 aa8.51□□□□□ -1.05
HDAC6-228ENST00000486227 GAGE12IP0CL82 117 aa8.51□□□□□ -1.05
HDAC6-228ENST00000486227 CFHR3Q02985 330 aa8.51□□□□□ -1.05
HDAC6-228ENST00000486227 NACAE9PAV3 2078 aa8.51□□□□□ -1.05
HDAC6-228ENST00000486227 IGHV3-16A0A0C4DH30 117 aa8.51□□□□□ -1.05
HDAC6-228ENST00000486227 LINC01548A6NM66 108 aa8.51□□□□□ -1.05
HDAC6-228ENST00000486227 CFHR4Q92496 578 aa8.51□□□□□ -1.05
HDAC6-228ENST00000486227 C1orf159Q96HA4 380 aa8.51□□□□□ -1.05
HDAC6-228ENST00000486227 SPAG8Q99932 426 aaPredicted RBP8.51□□□□□ -1.05
HDAC6-228ENST00000486227 PRO1854Q9UHT4 67 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 79.6 ms