RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 CDK12Q9NYV4 1490 aaPredicted RBP1.31□□□□□ -2.2
UPF3B-203ENST00000478840 ATG2AQ2TAZ0 1938 aa1.31□□□□□ -2.2
UPF3B-203ENST00000478840 J3QLW9 94 aa1.31□□□□□ -2.2
UPF3B-203ENST00000478840 NPFFO15130 113 aa1.31□□□□□ -2.2
UPF3B-203ENST00000478840 RPS25P62851 125 aaKnown RBP1.31□□□□□ -2.2
UPF3B-203ENST00000478840 FXYD3Q14802 87 aa1.31□□□□□ -2.2
UPF3B-203ENST00000478840 SCIMPQ6UWF3 145 aa1.31□□□□□ -2.2
UPF3B-203ENST00000478840 Q6ZS92 163 aa1.31□□□□□ -2.2
UPF3B-203ENST00000478840 ZCCHC6Q5VYS8 1495 aaKnown RBP1.31□□□□□ -2.2
UPF3B-203ENST00000478840 LOC101927531A0A1B0GV80 90 aa1.3□□□□□ -2.2
UPF3B-203ENST00000478840 CCDC179H3BU77 68 aa1.3□□□□□ -2.2
UPF3B-203ENST00000478840 NDUFA2O43678 99 aa1.3□□□□□ -2.2
UPF3B-203ENST00000478840 CAV3P56539 151 aa1.3□□□□□ -2.2
UPF3B-203ENST00000478840 COPZ1P61923 177 aa1.3□□□□□ -2.2
UPF3B-203ENST00000478840 NDUFA11Q86Y39 141 aa1.3□□□□□ -2.2
UPF3B-203ENST00000478840 FAM107BQ9H098 131 aa1.3□□□□□ -2.2
UPF3B-203ENST00000478840 ERG28Q9UKR5 140 aa1.3□□□□□ -2.2
UPF3B-203ENST00000478840 MYH13Q9UKX3 1938 aa1.3□□□□□ -2.2
UPF3B-203ENST00000478840 DLEC1Q9Y238 1755 aa1.29□□□□□ -2.2
UPF3B-203ENST00000478840 TRAV17A0A0B4J275 112 aa1.29□□□□□ -2.2
UPF3B-203ENST00000478840 ZNF670-ZNF695F2Z2N8 137 aa1.29□□□□□ -2.2
UPF3B-203ENST00000478840 APOC1P02654 83 aa1.29□□□□□ -2.2
UPF3B-203ENST00000478840 C5orf56Q8N8D9 126 aa1.29□□□□□ -2.2
UPF3B-203ENST00000478840 TMEM191AQ9H0A3 160 aa1.29□□□□□ -2.2
UPF3B-203ENST00000478840 CCKP06307 115 aa1.28□□□□□ -2.2
UPF3B-203ENST00000478840 GUCA1AP43080 201 aaPredicted RBP1.28□□□□□ -2.2
UPF3B-203ENST00000478840 SELENOWP63302 87 aa1.28□□□□□ -2.2
UPF3B-203ENST00000478840 IQCJQ1A5X6 159 aa1.28□□□□□ -2.2
UPF3B-203ENST00000478840 Q86TA4 180 aa1.28□□□□□ -2.2
UPF3B-203ENST00000478840 BLMP54132 1417 aaPredicted RBP1.27□□□□□ -2.21
UPF3B-203ENST00000478840 EFCAB10A6NFE3 127 aa1.27□□□□□ -2.21
UPF3B-203ENST00000478840 PITX3O75364 302 aa1.27□□□□□ -2.21
UPF3B-203ENST00000478840 PYYP10082 97 aa1.27□□□□□ -2.21
UPF3B-203ENST00000478840 LINC01545Q5VT33 79 aa1.27□□□□□ -2.21
UPF3B-203ENST00000478840 C1orf54Q8WWF1 131 aa1.27□□□□□ -2.21
UPF3B-203ENST00000478840 LINC00208Q96KT6 92 aa1.27□□□□□ -2.21
UPF3B-203ENST00000478840 CCDC167Q9P0B6 97 aa1.27□□□□□ -2.21
UPF3B-203ENST00000478840 MYH6P13533 1939 aa1.27□□□□□ -2.21
UPF3B-203ENST00000478840 PTPRMP28827 1452 aa1.26□□□□□ -2.21
UPF3B-203ENST00000478840 SPAG17Q6Q759 2223 aa1.26□□□□□ -2.21
UPF3B-203ENST00000478840 TEX49A0A1B0GTD5 131 aa1.26□□□□□ -2.21
UPF3B-203ENST00000478840 SLC25A6P12236 298 aa1.26□□□□□ -2.21
UPF3B-203ENST00000478840 RRAS2P62070 204 aaPredicted RBP1.26□□□□□ -2.21
UPF3B-203ENST00000478840 VSTM2AQ8TAG5 236 aa1.26□□□□□ -2.21
UPF3B-203ENST00000478840 PSMG3Q9BT73 122 aaPredicted RBP1.26□□□□□ -2.21
UPF3B-203ENST00000478840 RREB1Q92766 1687 aa1.26□□□□□ -2.21
UPF3B-203ENST00000478840 K7EP13 123 aa1.25□□□□□ -2.21
UPF3B-203ENST00000478840 M0R129 80 aa1.25□□□□□ -2.21
UPF3B-203ENST00000478840 MIC13Q5XKP0 118 aa1.25□□□□□ -2.21
UPF3B-203ENST00000478840 PPP1R1CQ8WVI7 109 aa1.25□□□□□ -2.21
UPF3B-203ENST00000478840 PLAC4Q8WY50 150 aa1.25□□□□□ -2.21
UPF3B-203ENST00000478840 SDF2Q99470 211 aa1.25□□□□□ -2.21
UPF3B-203ENST00000478840 ZNF142P52746 1687 aaPredicted RBP1.25□□□□□ -2.21
UPF3B-203ENST00000478840 SPTBP11277 2137 aa1.25□□□□□ -2.21
UPF3B-203ENST00000478840 MYOM3Q5VTT5 1437 aa1.24□□□□□ -2.21
UPF3B-203ENST00000478840 FXYD6P3P58550 94 aa1.24□□□□□ -2.21
UPF3B-203ENST00000478840 SPCS2Q15005 226 aa1.24□□□□□ -2.21
UPF3B-203ENST00000478840 SPANXN1Q5VSR9 72 aa1.24□□□□□ -2.21
UPF3B-203ENST00000478840 Q6ZUT4 128 aa1.24□□□□□ -2.21
UPF3B-203ENST00000478840 AFDNP55196 1824 aaKnown RBP1.24□□□□□ -2.21
UPF3B-203ENST00000478840 KIF13AQ9H1H9 1805 aa1.24□□□□□ -2.21
UPF3B-203ENST00000478840 GRIN2AQ12879 1464 aa1.24□□□□□ -2.21
UPF3B-203ENST00000478840 PRB4P10163 310 aaPredicted RBP1.23□□□□□ -2.21
UPF3B-203ENST00000478840 PRB3Q04118 309 aaPredicted RBP1.23□□□□□ -2.21
UPF3B-203ENST00000478840 OR2T2Q6IF00 324 aa1.23□□□□□ -2.21
UPF3B-203ENST00000478840 KCNRGQ8N5I3 272 aa1.23□□□□□ -2.21
UPF3B-203ENST00000478840 ARL11Q969Q4 196 aa1.23□□□□□ -2.21
UPF3B-203ENST00000478840 TMEM2Q9UHN6 1383 aa1.22□□□□□ -2.21
UPF3B-203ENST00000478840 AKAP11Q9UKA4 1901 aa1.21□□□□□ -2.22
UPF3B-203ENST00000478840 EMX2Q04743 252 aa1.21□□□□□ -2.22
UPF3B-203ENST00000478840 KLKP1Q107X0 134 aa1.21□□□□□ -2.22
UPF3B-203ENST00000478840 SPINK13Q1W4C9 94 aa1.21□□□□□ -2.22
UPF3B-203ENST00000478840 COPS9Q8WXC6 57 aa1.21□□□□□ -2.22
UPF3B-203ENST00000478840 LINC00470Q9BZP3 86 aa1.21□□□□□ -2.22
UPF3B-203ENST00000478840 TRAV12-2A0A075B6T6 113 aa1.2□□□□□ -2.22
UPF3B-203ENST00000478840 FAM92AA1XBS5 289 aa1.2□□□□□ -2.22
UPF3B-203ENST00000478840 TFF1P04155 84 aa1.2□□□□□ -2.22
UPF3B-203ENST00000478840 ZNF56Q15929 161 aa1.2□□□□□ -2.22
UPF3B-203ENST00000478840 SPINK9Q5DT21 86 aa1.2□□□□□ -2.22
UPF3B-203ENST00000478840 COA4Q9NYJ1 87 aa1.2□□□□□ -2.22
UPF3B-203ENST00000478840 NDUFA12Q9UI09 145 aa1.2□□□□□ -2.22
UPF3B-203ENST00000478840 LAMB1P07942 1786 aa1.2□□□□□ -2.22
UPF3B-203ENST00000478840 ZDBF2Q9HCK1 2354 aa1.2□□□□□ -2.22
UPF3B-203ENST00000478840 PIRTP0C851 137 aa1.19□□□□□ -2.22
UPF3B-203ENST00000478840 PIPP12273 146 aaPredicted RBP1.19□□□□□ -2.22
UPF3B-203ENST00000478840 IFI27L1Q96BM0 104 aa1.19□□□□□ -2.22
UPF3B-203ENST00000478840 A6NIN4 97 aa1.18□□□□□ -2.22
UPF3B-203ENST00000478840 FXYD1O00168 92 aa1.18□□□□□ -2.22
UPF3B-203ENST00000478840 TMEM141Q96I45 108 aa1.18□□□□□ -2.22
UPF3B-203ENST00000478840 BET1LQ9NYM9 111 aa1.18□□□□□ -2.22
UPF3B-203ENST00000478840 DAPK1P53355 1430 aa1.17□□□□□ -2.22
UPF3B-203ENST00000478840 TCRBV3S1A0A5B6 114 aa1.17□□□□□ -2.22
UPF3B-203ENST00000478840 FAM25AB3EWG3 89 aa1.17□□□□□ -2.22
UPF3B-203ENST00000478840 FAM25CB3EWG5 89 aa1.17□□□□□ -2.22
UPF3B-203ENST00000478840 FAM25GB3EWG6 89 aa1.17□□□□□ -2.22
UPF3B-203ENST00000478840 IL5P05113 134 aa1.17□□□□□ -2.22
UPF3B-203ENST00000478840 RPL13AP3Q6NVV1 102 aa1.17□□□□□ -2.22
UPF3B-203ENST00000478840 SLC48A1Q6P1K1 146 aa1.17□□□□□ -2.22
UPF3B-203ENST00000478840 TSKUQ8WUA8 353 aa1.17□□□□□ -2.22
UPF3B-203ENST00000478840 SPTSSAQ969W0 71 aa1.17□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms