RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 ALMS1Q8TCU4 4167 aa8.13□□□□□ -1.11
CUX1-207ENST00000465461 RYR2Q92736 4967 aa8.12□□□□□ -1.11
CUX1-207ENST00000465461 TRGV4A0A0C4DH28 118 aa8.12□□□□□ -1.11
CUX1-207ENST00000465461 P0DMU3 169 aa8.12□□□□□ -1.11
CUX1-207ENST00000465461 FAM231AP0DMU4 169 aa8.12□□□□□ -1.11
CUX1-207ENST00000465461 FAM231CP0DMU5 169 aa8.12□□□□□ -1.11
CUX1-207ENST00000465461 UBE2DNLQ8IWF7 75 aa8.12□□□□□ -1.11
CUX1-207ENST00000465461 C15orf53Q8NAA6 179 aa8.12□□□□□ -1.11
CUX1-207ENST00000465461 EIF5A2Q9GZV4 153 aaKnown RBP8.12□□□□□ -1.11
CUX1-207ENST00000465461 JPT2Q9H910 190 aa8.12□□□□□ -1.11
CUX1-207ENST00000465461 HYDINQ4G0P3 5121 aa8.12□□□□□ -1.11
CUX1-207ENST00000465461 NACAE9PAV3 2078 aa8.11□□□□□ -1.11
CUX1-207ENST00000465461 A0A096LPF7 62 aa8.11□□□□□ -1.11
CUX1-207ENST00000465461 TRAV4A0A0B4J268 109 aa8.11□□□□□ -1.11
CUX1-207ENST00000465461 MUC21A0A0G2JKD1 596 aa8.11□□□□□ -1.11
CUX1-207ENST00000465461 MUC21A0A140T8X8 626 aa8.11□□□□□ -1.11
CUX1-207ENST00000465461 PAX4O43316 350 aa8.11□□□□□ -1.11
CUX1-207ENST00000465461 TAGLN2P37802 199 aaKnown RBP8.11□□□□□ -1.11
CUX1-207ENST00000465461 CRYBA4P53673 196 aa8.11□□□□□ -1.11
CUX1-207ENST00000465461 PARLQ9H300 379 aa8.11□□□□□ -1.11
CUX1-207ENST00000465461 IL36BQ9NZH7 164 aa8.11□□□□□ -1.11
CUX1-207ENST00000465461 HHLA3Q9XRX5 114 aa8.11□□□□□ -1.11
CUX1-207ENST00000465461 LYSTQ99698 3801 aa8.11□□□□□ -1.11
CUX1-207ENST00000465461 IGLV2-18A0A075B6J9 118 aa8.1□□□□□ -1.11
CUX1-207ENST00000465461 LOC100131303A0A0U1RQF7 123 aa8.1□□□□□ -1.11
CUX1-207ENST00000465461 RS1O15537 224 aa8.1□□□□□ -1.11
CUX1-207ENST00000465461 GZMBP10144 247 aa8.1□□□□□ -1.11
CUX1-207ENST00000465461 SSTP61278 116 aa8.1□□□□□ -1.11
CUX1-207ENST00000465461 SRSF3P84103 164 aaKnown RBP8.1□□□□□ -1.11
CUX1-207ENST00000465461 DNLZQ5SXM8 178 aa8.1□□□□□ -1.11
CUX1-207ENST00000465461 CFAP126Q5VTH2 177 aa8.1□□□□□ -1.11
CUX1-207ENST00000465461 OCC1Q8TAD7 63 aa8.1□□□□□ -1.11
CUX1-207ENST00000465461 FAM210AQ96ND0 272 aa8.1□□□□□ -1.11
CUX1-207ENST00000465461 SAMD10Q9BYL1 202 aa8.1□□□□□ -1.11
CUX1-207ENST00000465461 PRO0255Q9UI72 69 aa8.1□□□□□ -1.11
CUX1-207ENST00000465461 DNAH1Q9P2D7 4330 aa8.09□□□□□ -1.11
CUX1-207ENST00000465461 C19orf71A6NCJ1 209 aa8.09□□□□□ -1.11
CUX1-207ENST00000465461 K7EN84 100 aa8.09□□□□□ -1.11
CUX1-207ENST00000465461 M0R2N4 97 aa8.09□□□□□ -1.11
CUX1-207ENST00000465461 M0R381 172 aa8.09□□□□□ -1.11
CUX1-207ENST00000465461 SRP19P09132 144 aaKnown RBP8.09□□□□□ -1.11
CUX1-207ENST00000465461 ESRGQ1W209 222 aa8.09□□□□□ -1.11
CUX1-207ENST00000465461 SCRT2Q9NQ03 307 aa8.09□□□□□ -1.11
CUX1-207ENST00000465461 LINC00588Q9Y4M8 146 aa8.09□□□□□ -1.11
CUX1-207ENST00000465461 C9JQL5 133 aa8.08□□□□□ -1.12
CUX1-207ENST00000465461 Q6ZSN1 163 aa8.08□□□□□ -1.12
CUX1-207ENST00000465461 PTH2Q96A98 100 aa8.08□□□□□ -1.12
CUX1-207ENST00000465461 DAZAP1Q96EP5 407 aaKnown RBP8.08□□□□□ -1.12
CUX1-207ENST00000465461 PHLDA3Q9Y5J5 127 aa8.08□□□□□ -1.12
CUX1-207ENST00000465461 A0A087WWL8 130 aa8.07□□□□□ -1.12
CUX1-207ENST00000465461 TMEM250H0YL14 139 aa8.07□□□□□ -1.12
CUX1-207ENST00000465461 H3BNG1 76 aa8.07□□□□□ -1.12
CUX1-207ENST00000465461 GYPEP15421 78 aa8.07□□□□□ -1.12
CUX1-207ENST00000465461 GATA1P15976 413 aaPredicted RBP8.07□□□□□ -1.12
CUX1-207ENST00000465461 NUDT10Q8NFP7 164 aa8.07□□□□□ -1.12
CUX1-207ENST00000465461 OR2D3Q8NGH3 330 aa8.07□□□□□ -1.12
CUX1-207ENST00000465461 OR10AG1Q8NH19 301 aa8.07□□□□□ -1.12
CUX1-207ENST00000465461 NUDT11Q96G61 164 aa8.07□□□□□ -1.12
CUX1-207ENST00000465461 RNASE7Q9H1E1 156 aaKnown RBP8.07□□□□□ -1.12
CUX1-207ENST00000465461 ICOSQ9Y6W8 199 aa8.07□□□□□ -1.12
CUX1-207ENST00000465461 K7EQD1 137 aa8.06□□□□□ -1.12
CUX1-207ENST00000465461 P01737 135 aa8.06□□□□□ -1.12
CUX1-207ENST00000465461 CCL18P55774 89 aa8.06□□□□□ -1.12
CUX1-207ENST00000465461 SLAQ13239 276 aa8.06□□□□□ -1.12
CUX1-207ENST00000465461 RNF212Q495C1 297 aa8.06□□□□□ -1.12
CUX1-207ENST00000465461 FAM74A4Q5TZK3 123 aa8.06□□□□□ -1.12
CUX1-207ENST00000465461 SLC25A29Q8N8R3 303 aa8.06□□□□□ -1.12
CUX1-207ENST00000465461 SYT8Q8NBV8 401 aa8.06□□□□□ -1.12
CUX1-207ENST00000465461 SMIM12Q96EX1 92 aa8.06□□□□□ -1.12
CUX1-207ENST00000465461 TPPP3Q9BW30 176 aa8.06□□□□□ -1.12
CUX1-207ENST00000465461 ZNF727A8MUV8 499 aa8.05□□□□□ -1.12
CUX1-207ENST00000465461 A8MWV9 139 aa8.05□□□□□ -1.12
CUX1-207ENST00000465461 UFSP1Q6NVU6 142 aa8.05□□□□□ -1.12
CUX1-207ENST00000465461 ZFP82Q8N141 532 aa8.05□□□□□ -1.12
CUX1-207ENST00000465461 SMIM7Q9BQ49 75 aa8.05□□□□□ -1.12
CUX1-207ENST00000465461 SSBP4Q9BWG4 385 aaPredicted RBP8.05□□□□□ -1.12
CUX1-207ENST00000465461 Q9UF83 564 aa8.05□□□□□ -1.12
CUX1-207ENST00000465461 VPS13DQ5THJ4 4388 aa8.05□□□□□ -1.12
CUX1-207ENST00000465461 SNAI2O43623 268 aa8.04□□□□□ -1.12
CUX1-207ENST00000465461 CRYGDP07320 174 aa8.04□□□□□ -1.12
CUX1-207ENST00000465461 CXCL1P09341 107 aa8.04□□□□□ -1.12
CUX1-207ENST00000465461 MED14OSP0DP75 135 aa8.04□□□□□ -1.12
CUX1-207ENST00000465461 IFITM2Q01629 132 aa8.04□□□□□ -1.12
CUX1-207ENST00000465461 MRPL23Q16540 153 aaKnown RBP8.04□□□□□ -1.12
CUX1-207ENST00000465461 SPANXN1Q5VSR9 72 aa8.04□□□□□ -1.12
CUX1-207ENST00000465461 LYPD5Q6UWN5 251 aa8.04□□□□□ -1.12
CUX1-207ENST00000465461 C14orf178Q8N769 122 aaPredicted RBP8.04□□□□□ -1.12
CUX1-207ENST00000465461 ZNRF2Q8NHG8 242 aa8.04□□□□□ -1.12
CUX1-207ENST00000465461 SFRP2Q96HF1 295 aa8.04□□□□□ -1.12
CUX1-207ENST00000465461 BIN3Q9NQY0 253 aa8.04□□□□□ -1.12
CUX1-207ENST00000465461 OR5AL1P0C617 328 aa8.03□□□□□ -1.12
CUX1-207ENST00000465461 IGLC6P0CF74 106 aa8.03□□□□□ -1.12
CUX1-207ENST00000465461 SRIP30626 198 aa8.03□□□□□ -1.12
CUX1-207ENST00000465461 PEA15Q15121 130 aa8.03□□□□□ -1.12
CUX1-207ENST00000465461 PIK3CD-AS1Q5SR53 167 aa8.03□□□□□ -1.12
CUX1-207ENST00000465461 FER1L6-AS1Q8NA97 138 aa8.03□□□□□ -1.12
CUX1-207ENST00000465461 RPP21Q9H633 154 aaKnown RBP8.03□□□□□ -1.12
CUX1-207ENST00000465461 MSRB1Q9NZV6 116 aa8.03□□□□□ -1.12
CUX1-207ENST00000465461 TRBV6-4A0A1B0GX49 114 aa8.02□□□□□ -1.13
CUX1-207ENST00000465461 RPS20P60866 119 aaKnown RBP8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms