RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 TRAV4A0A0B4J268 109 aa16■□□□□ 0.15
CCDC28B-203ENST00000461819 TRGV4A0A0C4DH28 118 aa16■□□□□ 0.15
CCDC28B-203ENST00000461819 IGLV2-8P01709 118 aa16■□□□□ 0.15
CCDC28B-203ENST00000461819 SFTA3P0C7M3 94 aa16■□□□□ 0.15
CCDC28B-203ENST00000461819 PGPEP1LA6NFU8 196 aa15.99■□□□□ 0.15
CCDC28B-203ENST00000461819 RPL19P84098 196 aaKnown RBP15.99■□□□□ 0.15
CCDC28B-203ENST00000461819 DNLZQ5SXM8 178 aa15.99■□□□□ 0.15
CCDC28B-203ENST00000461819 UBE2DNLQ8IWF7 75 aa15.99■□□□□ 0.15
CCDC28B-203ENST00000461819 DAZAP1Q96EP5 407 aaKnown RBP15.99■□□□□ 0.15
CCDC28B-203ENST00000461819 ZNF479Q96JC4 524 aa15.99■□□□□ 0.15
CCDC28B-203ENST00000461819 PARLQ9H300 379 aa15.99■□□□□ 0.15
CCDC28B-203ENST00000461819 NACAE9PAV3 2078 aa15.99■□□□□ 0.15
CCDC28B-203ENST00000461819 ARMS2P0C7Q2 107 aa15.98■□□□□ 0.15
CCDC28B-203ENST00000461819 BIN3Q9NQY0 253 aa15.98■□□□□ 0.15
CCDC28B-203ENST00000461819 VPS13DQ5THJ4 4388 aa15.98■□□□□ 0.15
CCDC28B-203ENST00000461819 SLAQ13239 276 aa15.97■□□□□ 0.15
CCDC28B-203ENST00000461819 FHL2Q14192 279 aa15.97■□□□□ 0.15
CCDC28B-203ENST00000461819 POM121L12Q8N7R1 296 aa15.97■□□□□ 0.15
CCDC28B-203ENST00000461819 PTH2Q96A98 100 aa15.97■□□□□ 0.15
CCDC28B-203ENST00000461819 PRO0255Q9UI72 69 aa15.97■□□□□ 0.15
CCDC28B-203ENST00000461819 H3BNG1 76 aa15.96■□□□□ 0.15
CCDC28B-203ENST00000461819 PAX4O43316 350 aa15.96■□□□□ 0.15
CCDC28B-203ENST00000461819 SYT8Q8NBV8 401 aa15.96■□□□□ 0.15
CCDC28B-203ENST00000461819 HHLA3Q9XRX5 114 aa15.96■□□□□ 0.15
CCDC28B-203ENST00000461819 PHLDA3Q9Y5J5 127 aa15.96■□□□□ 0.15
CCDC28B-203ENST00000461819 VSIG2Q96IQ7 327 aa15.95■□□□□ 0.14
CCDC28B-203ENST00000461819 RS1O15537 224 aa15.94■□□□□ 0.14
CCDC28B-203ENST00000461819 NDUFS6O75380 124 aaKnown RBP15.94■□□□□ 0.14
CCDC28B-203ENST00000461819 CXCL1P09341 107 aa15.94■□□□□ 0.14
CCDC28B-203ENST00000461819 CFAP126Q5VTH2 177 aa15.94■□□□□ 0.14
CCDC28B-203ENST00000461819 C19orf71A6NCJ1 209 aa15.93■□□□□ 0.14
CCDC28B-203ENST00000461819 P01737 135 aa15.93■□□□□ 0.14
CCDC28B-203ENST00000461819 CRYBA4P53673 196 aa15.93■□□□□ 0.14
CCDC28B-203ENST00000461819 ZNF575Q86XF7 245 aa15.93■□□□□ 0.14
CCDC28B-203ENST00000461819 OR2D3Q8NGH3 330 aa15.93■□□□□ 0.14
CCDC28B-203ENST00000461819 M0R381 172 aa15.92■□□□□ 0.14
CCDC28B-203ENST00000461819 SRP19P09132 144 aaKnown RBP15.92■□□□□ 0.14
CCDC28B-203ENST00000461819 MED14OSP0DP75 135 aa15.92■□□□□ 0.14
CCDC28B-203ENST00000461819 RAB14P61106 215 aa15.92■□□□□ 0.14
CCDC28B-203ENST00000461819 PIK3CD-AS1Q5SR53 167 aa15.92■□□□□ 0.14
CCDC28B-203ENST00000461819 OCC1Q8TAD7 63 aa15.92■□□□□ 0.14
CCDC28B-203ENST00000461819 SMIM7Q9BQ49 75 aa15.92■□□□□ 0.14
CCDC28B-203ENST00000461819 SCRT2Q9NQ03 307 aa15.92■□□□□ 0.14
CCDC28B-203ENST00000461819 A8MWV9 139 aa15.91■□□□□ 0.14
CCDC28B-203ENST00000461819 CIDEAO60543 219 aa15.91■□□□□ 0.14
CCDC28B-203ENST00000461819 RPS20P60866 119 aaKnown RBP15.91■□□□□ 0.14
CCDC28B-203ENST00000461819 RNF212Q495C1 297 aa15.91■□□□□ 0.14
CCDC28B-203ENST00000461819 DMRTA1Q5VZB9 504 aa15.91■□□□□ 0.14
CCDC28B-203ENST00000461819 ZFP82Q8N141 532 aa15.91■□□□□ 0.14
CCDC28B-203ENST00000461819 ICOSQ9Y6W8 199 aa15.91■□□□□ 0.14
CCDC28B-203ENST00000461819 DNAH6Q9C0G6 4158 aa15.9■□□□□ 0.14
CCDC28B-203ENST00000461819 IGHV3-73A0A0B4J1V6 119 aa15.9■□□□□ 0.14
CCDC28B-203ENST00000461819 K7EN84 100 aa15.9■□□□□ 0.14
CCDC28B-203ENST00000461819 CCL18P55774 89 aa15.9■□□□□ 0.14
CCDC28B-203ENST00000461819 PEA15Q15121 130 aa15.9■□□□□ 0.14
CCDC28B-203ENST00000461819 KMT2AQ03164 3969 aa15.9■□□□□ 0.14
CCDC28B-203ENST00000461819 XKRY2A2RUG3 117 aa15.89■□□□□ 0.13
CCDC28B-203ENST00000461819 ZNF727A8MUV8 499 aa15.89■□□□□ 0.13
CCDC28B-203ENST00000461819 A0A096LPF7 62 aa15.88■□□□□ 0.13
CCDC28B-203ENST00000461819 GZMBP10144 247 aa15.88■□□□□ 0.13
CCDC28B-203ENST00000461819 GATA1P15976 413 aaPredicted RBP15.88■□□□□ 0.13
CCDC28B-203ENST00000461819 TPPP3Q9BW30 176 aa15.88■□□□□ 0.13
CCDC28B-203ENST00000461819 SNAI2O43623 268 aa15.87■□□□□ 0.13
CCDC28B-203ENST00000461819 GYPEP15421 78 aa15.87■□□□□ 0.13
CCDC28B-203ENST00000461819 NUDT10Q8NFP7 164 aa15.87■□□□□ 0.13
CCDC28B-203ENST00000461819 OR10AG1Q8NH19 301 aa15.87■□□□□ 0.13
CCDC28B-203ENST00000461819 NUDT11Q96G61 164 aa15.87■□□□□ 0.13
CCDC28B-203ENST00000461819 RNASE7Q9H1E1 156 aaKnown RBP15.87■□□□□ 0.13
CCDC28B-203ENST00000461819 JPT2Q9H910 190 aa15.87■□□□□ 0.13
CCDC28B-203ENST00000461819 LY96Q9Y6Y9 160 aa15.87■□□□□ 0.13
CCDC28B-203ENST00000461819 OR5AL1P0C617 328 aa15.86■□□□□ 0.13
CCDC28B-203ENST00000461819 MRPL23Q16540 153 aaKnown RBP15.86■□□□□ 0.13
CCDC28B-203ENST00000461819 FAM74A4Q5TZK3 123 aa15.86■□□□□ 0.13
CCDC28B-203ENST00000461819 SPANXN1Q5VSR9 72 aa15.86■□□□□ 0.13
CCDC28B-203ENST00000461819 ZFP2Q6ZN57 461 aa15.86■□□□□ 0.13
CCDC28B-203ENST00000461819 RPP21Q9H633 154 aaKnown RBP15.86■□□□□ 0.13
CCDC28B-203ENST00000461819 MUC21A0A0G2JKD1 596 aa15.85■□□□□ 0.13
CCDC28B-203ENST00000461819 MUC21A0A140T8X8 626 aa15.85■□□□□ 0.13
CCDC28B-203ENST00000461819 RHODO00212 210 aa15.85■□□□□ 0.13
CCDC28B-203ENST00000461819 SRSF3P84103 164 aaKnown RBP15.85■□□□□ 0.13
CCDC28B-203ENST00000461819 FER1L6-AS1Q8NA97 138 aa15.85■□□□□ 0.13
CCDC28B-203ENST00000461819 SFRP2Q96HF1 295 aa15.85■□□□□ 0.13
CCDC28B-203ENST00000461819 SSBP4Q9BWG4 385 aaPredicted RBP15.85■□□□□ 0.13
CCDC28B-203ENST00000461819 SAMD10Q9BYL1 202 aa15.85■□□□□ 0.13
CCDC28B-203ENST00000461819 SMDT1Q9H4I9 107 aa15.85■□□□□ 0.13
CCDC28B-203ENST00000461819 K7EQD1 137 aa15.84■□□□□ 0.13
CCDC28B-203ENST00000461819 SRIP30626 198 aa15.84■□□□□ 0.13
CCDC28B-203ENST00000461819 FAM3BP58499 235 aaPredicted RBP15.84■□□□□ 0.13
CCDC28B-203ENST00000461819 SSTP61278 116 aa15.84■□□□□ 0.13
CCDC28B-203ENST00000461819 RHOHQ15669 191 aa15.84■□□□□ 0.13
CCDC28B-203ENST00000461819 FAM74A3Q4VXF1 159 aa15.84■□□□□ 0.13
CCDC28B-203ENST00000461819 SLC25A29Q8N8R3 303 aa15.84■□□□□ 0.13
CCDC28B-203ENST00000461819 PRADC1Q9BSG0 188 aa15.84■□□□□ 0.13
CCDC28B-203ENST00000461819 LINC00588Q9Y4M8 146 aa15.84■□□□□ 0.13
CCDC28B-203ENST00000461819 A0A087WWL8 130 aa15.83■□□□□ 0.12
CCDC28B-203ENST00000461819 TRBV6-4A0A1B0GX49 114 aa15.83■□□□□ 0.12
CCDC28B-203ENST00000461819 C9JQL5 133 aa15.83■□□□□ 0.12
CCDC28B-203ENST00000461819 NXPH4O95158 308 aa15.83■□□□□ 0.12
CCDC28B-203ENST00000461819 IGLC6P0CF74 106 aa15.83■□□□□ 0.12
CCDC28B-203ENST00000461819 LOC100131303A0A0U1RQF7 123 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 91 ms