RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 IGLV2-18A0A075B6J9 118 aa12.98□□□□□ -0.33
SHH-203ENST00000435425 RBFOX3A6NFN3 312 aa12.98□□□□□ -0.33
SHH-203ENST00000435425 H3BNG1 76 aa12.98□□□□□ -0.33
SHH-203ENST00000435425 M0R2N4 97 aa12.98□□□□□ -0.33
SHH-203ENST00000435425 ARMS2P0C7Q2 107 aa12.98□□□□□ -0.33
SHH-203ENST00000435425 TAGLN2P37802 199 aaKnown RBP12.98□□□□□ -0.33
SHH-203ENST00000435425 CCL18P55774 89 aa12.98□□□□□ -0.33
SHH-203ENST00000435425 SLAQ13239 276 aa12.98□□□□□ -0.33
SHH-203ENST00000435425 LINC01559Q495D7 138 aa12.98□□□□□ -0.33
SHH-203ENST00000435425 VPS13DQ5THJ4 4388 aa12.97□□□□□ -0.33
SHH-203ENST00000435425 A0A096LPF7 62 aa12.97□□□□□ -0.33
SHH-203ENST00000435425 GNG4P50150 75 aa12.97□□□□□ -0.33
SHH-203ENST00000435425 RPL19P84098 196 aaKnown RBP12.97□□□□□ -0.33
SHH-203ENST00000435425 IL36BQ9NZH7 164 aa12.97□□□□□ -0.33
SHH-203ENST00000435425 IGHV3-73A0A0B4J1V6 119 aa12.96□□□□□ -0.33
SHH-203ENST00000435425 RS1O15537 224 aa12.96□□□□□ -0.33
SHH-203ENST00000435425 LYPD6BQ8NI32 183 aa12.96□□□□□ -0.33
SHH-203ENST00000435425 PCNPQ8WW12 178 aaKnown RBP12.96□□□□□ -0.33
SHH-203ENST00000435425 LINC00588Q9Y4M8 146 aa12.96□□□□□ -0.33
SHH-203ENST00000435425 ICOSQ9Y6W8 199 aa12.96□□□□□ -0.33
SHH-203ENST00000435425 IGLV2-8P01709 118 aa12.95□□□□□ -0.34
SHH-203ENST00000435425 TOR2AQ5JU69 321 aa12.95□□□□□ -0.34
SHH-203ENST00000435425 DNLZQ5SXM8 178 aa12.95□□□□□ -0.34
SHH-203ENST00000435425 CFAP126Q5VTH2 177 aa12.95□□□□□ -0.34
SHH-203ENST00000435425 ZNF575Q86XF7 245 aa12.95□□□□□ -0.34
SHH-203ENST00000435425 CEBPGP53567 150 aa12.94□□□□□ -0.34
SHH-203ENST00000435425 ESRGQ1W209 222 aa12.94□□□□□ -0.34
SHH-203ENST00000435425 PTH2Q96A98 100 aa12.94□□□□□ -0.34
SHH-203ENST00000435425 DAZAP1Q96EP5 407 aaKnown RBP12.94□□□□□ -0.34
SHH-203ENST00000435425 EIF5A2Q9GZV4 153 aaKnown RBP12.94□□□□□ -0.34
SHH-203ENST00000435425 PHLDA3Q9Y5J5 127 aa12.94□□□□□ -0.34
SHH-203ENST00000435425 TRBV20OR9-2A0A075B6H5 130 aa12.93□□□□□ -0.34
SHH-203ENST00000435425 GYPEP15421 78 aa12.93□□□□□ -0.34
SHH-203ENST00000435425 DMRTA1Q5VZB9 504 aa12.93□□□□□ -0.34
SHH-203ENST00000435425 TEX261Q6UWH6 196 aa12.93□□□□□ -0.34
SHH-203ENST00000435425 SYT8Q8NBV8 401 aa12.93□□□□□ -0.34
SHH-203ENST00000435425 JPT2Q9H910 190 aa12.93□□□□□ -0.34
SHH-203ENST00000435425 LOC100131303A0A0U1RQF7 123 aa12.92□□□□□ -0.34
SHH-203ENST00000435425 M0R381 172 aa12.92□□□□□ -0.34
SHH-203ENST00000435425 MRPL23Q16540 153 aaKnown RBP12.92□□□□□ -0.34
SHH-203ENST00000435425 GATA1P15976 413 aaPredicted RBP12.91□□□□□ -0.34
SHH-203ENST00000435425 FAM3BP58499 235 aaPredicted RBP12.91□□□□□ -0.34
SHH-203ENST00000435425 PARLQ9H300 379 aa12.91□□□□□ -0.34
SHH-203ENST00000435425 A8MWV9 139 aa12.9□□□□□ -0.34
SHH-203ENST00000435425 K7EQD1 137 aa12.9□□□□□ -0.34
SHH-203ENST00000435425 SRIP30626 198 aa12.9□□□□□ -0.34
SHH-203ENST00000435425 SSTP61278 116 aa12.9□□□□□ -0.34
SHH-203ENST00000435425 ZNRF2Q8NHG8 242 aa12.9□□□□□ -0.34
SHH-203ENST00000435425 SMIM12Q96EX1 92 aa12.9□□□□□ -0.34
SHH-203ENST00000435425 FAM210AQ96ND0 272 aa12.9□□□□□ -0.34
SHH-203ENST00000435425 SCRT2Q9NQ03 307 aa12.9□□□□□ -0.34
SHH-203ENST00000435425 KMT2AQ03164 3969 aa12.89□□□□□ -0.35
SHH-203ENST00000435425 MUC21A0A0G2JKD1 596 aa12.89□□□□□ -0.35
SHH-203ENST00000435425 MUC21A0A140T8X8 626 aa12.89□□□□□ -0.35
SHH-203ENST00000435425 TMEM250H0YL14 139 aa12.89□□□□□ -0.35
SHH-203ENST00000435425 CIDEAO60543 219 aa12.89□□□□□ -0.35
SHH-203ENST00000435425 GZMBP10144 247 aa12.89□□□□□ -0.35
SHH-203ENST00000435425 NEGR1Q7Z3B1 354 aa12.89□□□□□ -0.35
SHH-203ENST00000435425 ZFP82Q8N141 532 aa12.89□□□□□ -0.35
SHH-203ENST00000435425 SLC25A29Q8N8R3 303 aa12.89□□□□□ -0.35
SHH-203ENST00000435425 OR2D3Q8NGH3 330 aa12.89□□□□□ -0.35
SHH-203ENST00000435425 SAMD10Q9BYL1 202 aa12.89□□□□□ -0.35
SHH-203ENST00000435425 C19orf71A6NCJ1 209 aa12.88□□□□□ -0.35
SHH-203ENST00000435425 PIK3CD-AS1Q5SR53 167 aa12.88□□□□□ -0.35
SHH-203ENST00000435425 FAM74A4Q5TZK3 123 aa12.88□□□□□ -0.35
SHH-203ENST00000435425 OCC1Q8TAD7 63 aa12.88□□□□□ -0.35
SHH-203ENST00000435425 PRADC1Q9BSG0 188 aa12.88□□□□□ -0.35
SHH-203ENST00000435425 BIN3Q9NQY0 253 aa12.88□□□□□ -0.35
SHH-203ENST00000435425 A0A087WWL8 130 aa12.87□□□□□ -0.35
SHH-203ENST00000435425 P01737 135 aa12.87□□□□□ -0.35
SHH-203ENST00000435425 CXCL1P09341 107 aa12.87□□□□□ -0.35
SHH-203ENST00000435425 MED14OSP0DP75 135 aa12.87□□□□□ -0.35
SHH-203ENST00000435425 LYPD5Q6UWN5 251 aa12.87□□□□□ -0.35
SHH-203ENST00000435425 Q6ZSN1 163 aa12.87□□□□□ -0.35
SHH-203ENST00000435425 OR10AG1Q8NH19 301 aa12.87□□□□□ -0.35
SHH-203ENST00000435425 SFRP2Q96HF1 295 aa12.87□□□□□ -0.35
SHH-203ENST00000435425 Q9H8V8 135 aa12.87□□□□□ -0.35
SHH-203ENST00000435425 MRPS16Q9Y3D3 137 aaKnown RBP12.87□□□□□ -0.35
SHH-203ENST00000435425 RHOHQ15669 191 aa12.86□□□□□ -0.35
SHH-203ENST00000435425 TPPP3Q9BW30 176 aa12.86□□□□□ -0.35
SHH-203ENST00000435425 DNAH6Q9C0G6 4158 aa12.86□□□□□ -0.35
SHH-203ENST00000435425 TRBV6-4A0A1B0GX49 114 aa12.85□□□□□ -0.35
SHH-203ENST00000435425 K7EN84 100 aa12.85□□□□□ -0.35
SHH-203ENST00000435425 SNAI2O43623 268 aa12.85□□□□□ -0.35
SHH-203ENST00000435425 SRP19P09132 144 aaKnown RBP12.85□□□□□ -0.35
SHH-203ENST00000435425 RPS20P60866 119 aaKnown RBP12.85□□□□□ -0.35
SHH-203ENST00000435425 SPANXN1Q5VSR9 72 aa12.85□□□□□ -0.35
SHH-203ENST00000435425 ZFP2Q6ZN57 461 aa12.85□□□□□ -0.35
SHH-203ENST00000435425 NUDT10Q8NFP7 164 aa12.85□□□□□ -0.35
SHH-203ENST00000435425 NUDT11Q96G61 164 aa12.85□□□□□ -0.35
SHH-203ENST00000435425 OR5AL1P0C617 328 aa12.84□□□□□ -0.35
SHH-203ENST00000435425 Q6ZR54 194 aa12.84□□□□□ -0.35
SHH-203ENST00000435425 UPK3BQ9BT76 320 aa12.84□□□□□ -0.35
SHH-203ENST00000435425 SSBP4Q9BWG4 385 aaPredicted RBP12.84□□□□□ -0.35
SHH-203ENST00000435425 RNASE7Q9H1E1 156 aaKnown RBP12.84□□□□□ -0.35
SHH-203ENST00000435425 NBDYA0A0U1RRE5 68 aa12.83□□□□□ -0.36
SHH-203ENST00000435425 RHODO00212 210 aa12.83□□□□□ -0.36
SHH-203ENST00000435425 NXPH4O95158 308 aa12.83□□□□□ -0.36
SHH-203ENST00000435425 CRYGDP07320 174 aa12.83□□□□□ -0.36
SHH-203ENST00000435425 UFSP1Q6NVU6 142 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms