RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 CRYBA4P53673 196 aa15.12■□□□□ 0.01
CLN3-207ENST00000395653 PGPEP1LA6NFU8 196 aa15.11■□□□□ 0.01
CLN3-207ENST00000395653 PAX4O43316 350 aa15.11■□□□□ 0.01
CLN3-207ENST00000395653 GNG4P50150 75 aa15.11■□□□□ 0.01
CLN3-207ENST00000395653 FAM3BP58499 235 aaPredicted RBP15.11■□□□□ 0.01
CLN3-207ENST00000395653 ZNF506Q5JVG8 444 aa15.11■□□□□ 0.01
CLN3-207ENST00000395653 PIK3CD-AS1Q5SR53 167 aa15.11■□□□□ 0.01
CLN3-207ENST00000395653 PRR27Q6MZM9 219 aa15.11■□□□□ 0.01
CLN3-207ENST00000395653 ZNF575Q86XF7 245 aa15.11■□□□□ 0.01
CLN3-207ENST00000395653 TMSB15BA0A087X1C1 80 aa15.1■□□□□ 0.01
CLN3-207ENST00000395653 RAB19A4D1S5 217 aa15.1■□□□□ 0.01
CLN3-207ENST00000395653 GRIFINA4D1Z8 144 aa15.1■□□□□ 0.01
CLN3-207ENST00000395653 H3BVH4 76 aa15.1■□□□□ 0.01
CLN3-207ENST00000395653 RS1O15537 224 aa15.1■□□□□ 0.01
CLN3-207ENST00000395653 TEX261Q6UWH6 196 aa15.1■□□□□ 0.01
CLN3-207ENST00000395653 CIDEAO60543 219 aa15.09■□□□□ 0.01
CLN3-207ENST00000395653 IGLV2-8P01709 118 aa15.09■□□□□ 0.01
CLN3-207ENST00000395653 ARMS2P0C7Q2 107 aa15.09■□□□□ 0.01
CLN3-207ENST00000395653 CCL18P55774 89 aa15.09■□□□□ 0.01
CLN3-207ENST00000395653 TRBV20OR9-2A0A075B6H5 130 aa15.09■□□□□ 0.01
CLN3-207ENST00000395653 A0A096LPF7 62 aa15.09■□□□□ 0.01
CLN3-207ENST00000395653 TMEM250H0YL14 139 aa15.09■□□□□ 0.01
CLN3-207ENST00000395653 CXCL1P09341 107 aa15.09■□□□□ 0.01
CLN3-207ENST00000395653 CFAP126Q5VTH2 177 aa15.09■□□□□ 0.01
CLN3-207ENST00000395653 MGST1P10620 155 aaKnown RBP15.08■□□□□ 0
CLN3-207ENST00000395653 SCRT2Q9NQ03 307 aa15.08■□□□□ 0
CLN3-207ENST00000395653 ICOSQ9Y6W8 199 aa15.08■□□□□ 0
CLN3-207ENST00000395653 NDUFS6O75380 124 aaKnown RBP15.07■□□□□ 0
CLN3-207ENST00000395653 MED14OSP0DP75 135 aa15.07■□□□□ 0
CLN3-207ENST00000395653 RPL19P84098 196 aaKnown RBP15.07■□□□□ 0
CLN3-207ENST00000395653 TOR2AQ5JU69 321 aa15.07■□□□□ 0
CLN3-207ENST00000395653 SYT8Q8NBV8 401 aa15.07■□□□□ 0
CLN3-207ENST00000395653 FAM210AQ96ND0 272 aa15.07■□□□□ 0
CLN3-207ENST00000395653 DNAH6Q9C0G6 4158 aa15.06■□□□□ 0
CLN3-207ENST00000395653 A8MWV9 139 aa15.06■□□□□ 0
CLN3-207ENST00000395653 BIN3Q9NQY0 253 aa15.06■□□□□ 0
CLN3-207ENST00000395653 LINC00588Q9Y4M8 146 aa15.06■□□□□ 0
CLN3-207ENST00000395653 PHLDA3Q9Y5J5 127 aa15.06■□□□□ 0
CLN3-207ENST00000395653 GATA1P15976 413 aaPredicted RBP15.05■□□□□ -0
CLN3-207ENST00000395653 EIF5A2Q9GZV4 153 aaKnown RBP15.05■□□□□ -0
CLN3-207ENST00000395653 MRPL23Q16540 153 aaKnown RBP15.04■□□□□ -0
CLN3-207ENST00000395653 DMRTA1Q5VZB9 504 aa15.04■□□□□ -0
CLN3-207ENST00000395653 PARLQ9H300 379 aa15.04■□□□□ -0
CLN3-207ENST00000395653 NACAE9PAV3 2078 aa15.04■□□□□ -0
CLN3-207ENST00000395653 C19orf71A6NCJ1 209 aa15.03■□□□□ -0
CLN3-207ENST00000395653 ESRGQ1W209 222 aa15.03■□□□□ -0
CLN3-207ENST00000395653 ZFP2Q6ZN57 461 aa15.03■□□□□ -0
CLN3-207ENST00000395653 DAZAP1Q96EP5 407 aaKnown RBP15.03■□□□□ -0
CLN3-207ENST00000395653 ZFP82Q8N141 532 aa15.02■□□□□ -0
CLN3-207ENST00000395653 ZNRF2Q8NHG8 242 aa15.02■□□□□ -0
CLN3-207ENST00000395653 PCNPQ8WW12 178 aaKnown RBP15.02■□□□□ -0
CLN3-207ENST00000395653 SSBP4Q9BWG4 385 aaPredicted RBP15.02■□□□□ -0
CLN3-207ENST00000395653 TRBV6-4A0A1B0GX49 114 aa15.01□□□□□ -0.01
CLN3-207ENST00000395653 K7EQD1 137 aa15.01□□□□□ -0.01
CLN3-207ENST00000395653 SNAI2O43623 268 aa15.01□□□□□ -0.01
CLN3-207ENST00000395653 GYPEP15421 78 aa15.01□□□□□ -0.01
CLN3-207ENST00000395653 UPK3BQ9BT76 320 aa15.01□□□□□ -0.01
CLN3-207ENST00000395653 IGHV3-73A0A0B4J1V6 119 aa15□□□□□ -0.01
CLN3-207ENST00000395653 M0R381 172 aa15□□□□□ -0.01
CLN3-207ENST00000395653 OR5AL1P0C617 328 aa15□□□□□ -0.01
CLN3-207ENST00000395653 SRIP30626 198 aa15□□□□□ -0.01
CLN3-207ENST00000395653 RPS20P60866 119 aaKnown RBP15□□□□□ -0.01
CLN3-207ENST00000395653 MRPS16Q9Y3D3 137 aaKnown RBP15□□□□□ -0.01
CLN3-207ENST00000395653 IGLV2-18A0A075B6J9 118 aa15□□□□□ -0.01
CLN3-207ENST00000395653 NXPH4O95158 308 aa15□□□□□ -0.01
CLN3-207ENST00000395653 P01737 135 aa15□□□□□ -0.01
CLN3-207ENST00000395653 RHOHQ15669 191 aa15□□□□□ -0.01
CLN3-207ENST00000395653 NEGR1Q7Z3B1 354 aa15□□□□□ -0.01
CLN3-207ENST00000395653 SLC25A29Q8N8R3 303 aa15□□□□□ -0.01
CLN3-207ENST00000395653 OR2D3Q8NGH3 330 aa15□□□□□ -0.01
CLN3-207ENST00000395653 JPT2Q9H910 190 aa15□□□□□ -0.01
CLN3-207ENST00000395653 RHODO00212 210 aa14.99□□□□□ -0.01
CLN3-207ENST00000395653 UFSP1Q6NVU6 142 aa14.99□□□□□ -0.01
CLN3-207ENST00000395653 OR10AG1Q8NH19 301 aa14.99□□□□□ -0.01
CLN3-207ENST00000395653 OCC1Q8TAD7 63 aa14.99□□□□□ -0.01
CLN3-207ENST00000395653 SFRP2Q96HF1 295 aa14.99□□□□□ -0.01
CLN3-207ENST00000395653 PRADC1Q9BSG0 188 aa14.99□□□□□ -0.01
CLN3-207ENST00000395653 SRP19P09132 144 aaKnown RBP14.98□□□□□ -0.01
CLN3-207ENST00000395653 CEBPGP53567 150 aa14.98□□□□□ -0.01
CLN3-207ENST00000395653 Q6ZR54 194 aa14.98□□□□□ -0.01
CLN3-207ENST00000395653 SAMD10Q9BYL1 202 aa14.98□□□□□ -0.01
CLN3-207ENST00000395653 DNAH10Q8IVF4 4471 aa14.97□□□□□ -0.01
CLN3-207ENST00000395653 LOC100131303A0A0U1RQF7 123 aa14.97□□□□□ -0.01
CLN3-207ENST00000395653 XKRY2A2RUG3 117 aa14.97□□□□□ -0.01
CLN3-207ENST00000395653 K7EN84 100 aa14.97□□□□□ -0.01
CLN3-207ENST00000395653 M0R2N4 97 aa14.97□□□□□ -0.01
CLN3-207ENST00000395653 SH2D6Q7Z4S9 175 aa14.97□□□□□ -0.01
CLN3-207ENST00000395653 DNAH2Q9P225 4427 aa14.97□□□□□ -0.01
CLN3-207ENST00000395653 IGLC6P0CF74 106 aa14.96□□□□□ -0.01
CLN3-207ENST00000395653 LYPD5Q6UWN5 251 aa14.96□□□□□ -0.01
CLN3-207ENST00000395653 NUDT10Q8NFP7 164 aa14.96□□□□□ -0.01
CLN3-207ENST00000395653 NUDT11Q96G61 164 aa14.96□□□□□ -0.01
CLN3-207ENST00000395653 Q9H8V8 135 aa14.96□□□□□ -0.01
CLN3-207ENST00000395653 LY96Q9Y6Y9 160 aa14.96□□□□□ -0.01
CLN3-207ENST00000395653 SPANXN1Q5VSR9 72 aa14.95□□□□□ -0.02
CLN3-207ENST00000395653 FER1L6-AS1Q8NA97 138 aa14.95□□□□□ -0.02
CLN3-207ENST00000395653 SMIM7Q9BQ49 75 aa14.95□□□□□ -0.02
CLN3-207ENST00000395653 CRYGDP07320 174 aa14.94□□□□□ -0.02
CLN3-207ENST00000395653 GZMBP10144 247 aa14.94□□□□□ -0.02
CLN3-207ENST00000395653 FAM74A4Q5TZK3 123 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms