RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 MAP1LC3CQ9BXW4 147 aa11.24□□□□□ -0.61
GPC3-202ENST00000394299 GOLT1BQ9Y3E0 138 aa11.24□□□□□ -0.61
GPC3-202ENST00000394299 WNK1Q9H4A3 2382 aa11.24□□□□□ -0.61
GPC3-202ENST00000394299 A0A0J9YX75 114 aa11.24□□□□□ -0.61
GPC3-202ENST00000394299 ASIPP42127 132 aa11.24□□□□□ -0.61
GPC3-202ENST00000394299 KLHL30-AS1Q8NEE0 82 aa11.24□□□□□ -0.61
GPC3-202ENST00000394299 IGHV4-4A0A075B6R2 117 aa11.23□□□□□ -0.61
GPC3-202ENST00000394299 TRAV9-2A0A087WT02 112 aa11.23□□□□□ -0.61
GPC3-202ENST00000394299 A0A1W2PRX2 142 aa11.23□□□□□ -0.61
GPC3-202ENST00000394299 LINC01619G3V211 115 aa11.23□□□□□ -0.61
GPC3-202ENST00000394299 IGLC3P0DOY3 106 aa11.23□□□□□ -0.61
GPC3-202ENST00000394299 SNRPD3P62318 126 aaKnown RBP11.23□□□□□ -0.61
GPC3-202ENST00000394299 C14orf178Q8N769 122 aaPredicted RBP11.23□□□□□ -0.61
GPC3-202ENST00000394299 OR1N2Q8NGR9 330 aa11.23□□□□□ -0.61
GPC3-202ENST00000394299 HSPB8Q9UJY1 196 aa11.23□□□□□ -0.61
GPC3-202ENST00000394299 DPF1Q92782 380 aa11.23□□□□□ -0.61
GPC3-202ENST00000394299 MUC4Q99102 2169 aa11.23□□□□□ -0.61
GPC3-202ENST00000394299 MAP1LC3AQ9H492 121 aa11.23□□□□□ -0.61
GPC3-202ENST00000394299 PHLDA3Q9Y5J5 127 aa11.23□□□□□ -0.61
GPC3-202ENST00000394299 SPINK13Q1W4C9 94 aa11.22□□□□□ -0.61
GPC3-202ENST00000394299 KNCNA6PVL3 124 aa11.21□□□□□ -0.61
GPC3-202ENST00000394299 SMIM15Q7Z3B0 74 aa11.21□□□□□ -0.61
GPC3-202ENST00000394299 OR2K2Q8NGT1 345 aa11.21□□□□□ -0.61
GPC3-202ENST00000394299 JPT2Q9H910 190 aa11.21□□□□□ -0.61
GPC3-202ENST00000394299 PPBPP02775 128 aa11.21□□□□□ -0.62
GPC3-202ENST00000394299 CACNG7P62955 275 aa11.21□□□□□ -0.62
GPC3-202ENST00000394299 NRACQ8N912 160 aa11.21□□□□□ -0.62
GPC3-202ENST00000394299 C18orf15Q96N68 181 aa11.21□□□□□ -0.62
GPC3-202ENST00000394299 C4orf3Q8WVX3 66 aa11.2□□□□□ -0.62
GPC3-202ENST00000394299 CD7P09564 240 aa11.2□□□□□ -0.62
GPC3-202ENST00000394299 ANKRD39Q53RE8 183 aa11.2□□□□□ -0.62
GPC3-202ENST00000394299 PET117Q6UWS5 81 aa11.2□□□□□ -0.62
GPC3-202ENST00000394299 FAM159AQ6UWV7 190 aa11.2□□□□□ -0.62
GPC3-202ENST00000394299 TMEM61Q8N0U2 210 aa11.2□□□□□ -0.62
GPC3-202ENST00000394299 TMEM86BQ8N661 226 aa11.2□□□□□ -0.62
GPC3-202ENST00000394299 OR9G4Q8NGQ1 327 aa11.2□□□□□ -0.62
GPC3-202ENST00000394299 SCRT2Q9NQ03 307 aa11.2□□□□□ -0.62
GPC3-202ENST00000394299 TRBV7-9A0A0J9YWB2 115 aa11.19□□□□□ -0.62
GPC3-202ENST00000394299 CD5LO43866 347 aa11.19□□□□□ -0.62
GPC3-202ENST00000394299 HBDP02042 147 aa11.19□□□□□ -0.62
GPC3-202ENST00000394299 CD28P10747 220 aa11.19□□□□□ -0.62
GPC3-202ENST00000394299 LEPP41159 167 aa11.19□□□□□ -0.62
GPC3-202ENST00000394299 GAGE1Q13065 139 aa11.19□□□□□ -0.62
GPC3-202ENST00000394299 IGLV2-18A0A075B6J9 118 aa11.19□□□□□ -0.62
GPC3-202ENST00000394299 C7orf71A4D174 169 aa11.19□□□□□ -0.62
GPC3-202ENST00000394299 DEFB131AP59861 70 aa11.19□□□□□ -0.62
GPC3-202ENST00000394299 Q6ZN92 141 aa11.19□□□□□ -0.62
GPC3-202ENST00000394299 FOXC2Q99958 501 aa11.19□□□□□ -0.62
GPC3-202ENST00000394299 MDFICQ9P1T7 246 aa11.19□□□□□ -0.62
GPC3-202ENST00000394299 PRM2P04554 102 aa11.18□□□□□ -0.62
GPC3-202ENST00000394299 BATFQ16520 125 aa11.18□□□□□ -0.62
GPC3-202ENST00000394299 LINC01545Q5VT33 79 aa11.18□□□□□ -0.62
GPC3-202ENST00000394299 SAMD13Q5VXD3 122 aa11.18□□□□□ -0.62
GPC3-202ENST00000394299 RPL39LQ96EH5 51 aaKnown RBP11.18□□□□□ -0.62
GPC3-202ENST00000394299 MGPP08493 103 aa11.18□□□□□ -0.62
GPC3-202ENST00000394299 TCTAP57738 103 aa11.18□□□□□ -0.62
GPC3-202ENST00000394299 DEFB104AQ8WTQ1 72 aa11.18□□□□□ -0.62
GPC3-202ENST00000394299 UQCR10Q9UDW1 63 aa11.18□□□□□ -0.62
GPC3-202ENST00000394299 C20orf202A1L168 122 aa11.17□□□□□ -0.62
GPC3-202ENST00000394299 RAX2Q96IS3 184 aa11.17□□□□□ -0.62
GPC3-202ENST00000394299 AMTNQ6UX39 209 aa11.17□□□□□ -0.62
GPC3-202ENST00000394299 TMEM158Q8WZ71 300 aa11.17□□□□□ -0.62
GPC3-202ENST00000394299 CDKN1BP46527 198 aa11.16□□□□□ -0.62
GPC3-202ENST00000394299 Q8N8P6 123 aa11.16□□□□□ -0.62
GPC3-202ENST00000394299 RASL10AQ92737 203 aa11.16□□□□□ -0.62
GPC3-202ENST00000394299 IFI27L1Q96BM0 104 aa11.16□□□□□ -0.62
GPC3-202ENST00000394299 NXT2Q9NPJ8 142 aaKnown RBP11.16□□□□□ -0.62
GPC3-202ENST00000394299 LAMTOR2Q9Y2Q5 125 aa11.16□□□□□ -0.62
GPC3-202ENST00000394299 A0A087WWL8 130 aa11.16□□□□□ -0.62
GPC3-202ENST00000394299 RBMY1A1P0DJD3 496 aaKnown RBP11.16□□□□□ -0.62
GPC3-202ENST00000394299 RBMY1CP0DJD4 496 aa11.16□□□□□ -0.62
GPC3-202ENST00000394299 HTN1P15515 57 aa11.16□□□□□ -0.62
GPC3-202ENST00000394299 RBMY1FQ15415 496 aaKnown RBP11.16□□□□□ -0.62
GPC3-202ENST00000394299 Q8N1Y9 231 aa11.16□□□□□ -0.62
GPC3-202ENST00000394299 CITED2Q99967 270 aaPredicted RBP11.16□□□□□ -0.62
GPC3-202ENST00000394299 DPH3P1Q9H4G8 78 aa11.16□□□□□ -0.62
GPC3-202ENST00000394299 CD300EQ496F6 205 aaPredicted RBP11.15□□□□□ -0.62
GPC3-202ENST00000394299 PEMTQ9UBM1 199 aa11.15□□□□□ -0.62
GPC3-202ENST00000394299 FCER1GP30273 86 aa11.14□□□□□ -0.63
GPC3-202ENST00000394299 FOXI2Q6ZQN5 318 aa11.14□□□□□ -0.63
GPC3-202ENST00000394299 LINC01006Q8NI28 216 aa11.14□□□□□ -0.63
GPC3-202ENST00000394299 RBMY1BA6NDE4 496 aaKnown RBP11.14□□□□□ -0.63
GPC3-202ENST00000394299 RBMY1EA6NEQ0 496 aaKnown RBP11.14□□□□□ -0.63
GPC3-202ENST00000394299 LINC01546A6NGU7 62 aa11.14□□□□□ -0.63
GPC3-202ENST00000394299 RBMY1DP0C7P1 496 aaKnown RBP11.14□□□□□ -0.63
GPC3-202ENST00000394299 HNRNPA3P51991 378 aaKnown RBP11.14□□□□□ -0.63
GPC3-202ENST00000394299 DEFB114Q30KQ6 69 aa11.14□□□□□ -0.63
GPC3-202ENST00000394299 TEX29Q8N6K0 151 aa11.14□□□□□ -0.63
GPC3-202ENST00000394299 DYNLRB2Q8TF09 96 aa11.14□□□□□ -0.63
GPC3-202ENST00000394299 DKK2Q9UBU2 259 aa11.14□□□□□ -0.63
GPC3-202ENST00000394299 IGHV3-16A0A0C4DH30 117 aa11.13□□□□□ -0.63
GPC3-202ENST00000394299 MED14OSP0DP75 135 aa11.13□□□□□ -0.63
GPC3-202ENST00000394299 TSPOP30536 169 aa11.13□□□□□ -0.63
GPC3-202ENST00000394299 LINC00315P59091 139 aa11.13□□□□□ -0.63
GPC3-202ENST00000394299 KIF25-AS1Q9Y6Z4 181 aa11.13□□□□□ -0.63
GPC3-202ENST00000394299 HIVEP2P31629 2446 aa11.13□□□□□ -0.63
GPC3-202ENST00000394299 NEGR1Q7Z3B1 354 aa11.13□□□□□ -0.63
GPC3-202ENST00000394299 STPG4Q8N801 248 aa11.13□□□□□ -0.63
GPC3-202ENST00000394299 MRAP2Q96G30 205 aa11.13□□□□□ -0.63
GPC3-202ENST00000394299 ODF3Q96PU9 254 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms