RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 TRBV20OR9-2A0A075B6H5 130 aa9.3□□□□□ -0.92
VPS28-202ENST00000377348 TRAV4A0A0B4J268 109 aa9.3□□□□□ -0.92
VPS28-202ENST00000377348 TRGV4A0A0C4DH28 118 aa9.3□□□□□ -0.92
VPS28-202ENST00000377348 ARMS2P0C7Q2 107 aa9.3□□□□□ -0.92
VPS28-202ENST00000377348 MGST1P10620 155 aaKnown RBP9.3□□□□□ -0.92
VPS28-202ENST00000377348 GNG4P50150 75 aa9.3□□□□□ -0.92
VPS28-202ENST00000377348 TOR2AQ5JU69 321 aa9.3□□□□□ -0.92
VPS28-202ENST00000377348 ZNF506Q5JVG8 444 aa9.3□□□□□ -0.92
VPS28-202ENST00000377348 OR4C5Q8NGB2 326 aa9.3□□□□□ -0.92
VPS28-202ENST00000377348 PAX4O43316 350 aa9.29□□□□□ -0.92
VPS28-202ENST00000377348 CRYBA4P53673 196 aa9.29□□□□□ -0.92
VPS28-202ENST00000377348 IFITM2Q01629 132 aa9.29□□□□□ -0.92
VPS28-202ENST00000377348 DNLZQ5SXM8 178 aa9.29□□□□□ -0.92
VPS28-202ENST00000377348 TEX261Q6UWH6 196 aa9.29□□□□□ -0.92
VPS28-202ENST00000377348 IL36BQ9NZH7 164 aa9.29□□□□□ -0.92
VPS28-202ENST00000377348 PRO0255Q9UI72 69 aa9.29□□□□□ -0.92
VPS28-202ENST00000377348 HHLA3Q9XRX5 114 aa9.29□□□□□ -0.92
VPS28-202ENST00000377348 DNAH2Q9P225 4427 aa9.29□□□□□ -0.92
VPS28-202ENST00000377348 A0A096LPF7 62 aa9.28□□□□□ -0.92
VPS28-202ENST00000377348 IGHV3-73A0A0B4J1V6 119 aa9.28□□□□□ -0.92
VPS28-202ENST00000377348 H3BNG1 76 aa9.28□□□□□ -0.92
VPS28-202ENST00000377348 RS1O15537 224 aa9.28□□□□□ -0.92
VPS28-202ENST00000377348 CFAP126Q5VTH2 177 aa9.28□□□□□ -0.92
VPS28-202ENST00000377348 JPT2Q9H910 190 aa9.28□□□□□ -0.92
VPS28-202ENST00000377348 CEBPGP53567 150 aa9.27□□□□□ -0.93
VPS28-202ENST00000377348 RNF212Q495C1 297 aa9.27□□□□□ -0.93
VPS28-202ENST00000377348 DMRTA1Q5VZB9 504 aa9.27□□□□□ -0.93
VPS28-202ENST00000377348 PTH2Q96A98 100 aa9.27□□□□□ -0.93
VPS28-202ENST00000377348 FAM210AQ96ND0 272 aa9.27□□□□□ -0.93
VPS28-202ENST00000377348 EIF5A2Q9GZV4 153 aaKnown RBP9.27□□□□□ -0.93
VPS28-202ENST00000377348 PARLQ9H300 379 aa9.27□□□□□ -0.93
VPS28-202ENST00000377348 LINC00588Q9Y4M8 146 aa9.27□□□□□ -0.93
VPS28-202ENST00000377348 EPPK1P58107 5090 aaKnown RBP9.27□□□□□ -0.93
VPS28-202ENST00000377348 NACAE9PAV3 2078 aa9.27□□□□□ -0.93
VPS28-202ENST00000377348 FRAS1Q86XX4 4008 aa9.26□□□□□ -0.93
VPS28-202ENST00000377348 IGLV2-18A0A075B6J9 118 aa9.26□□□□□ -0.93
VPS28-202ENST00000377348 LOC100131303A0A0U1RQF7 123 aa9.26□□□□□ -0.93
VPS28-202ENST00000377348 M0R2N4 97 aa9.26□□□□□ -0.93
VPS28-202ENST00000377348 GATA1P15976 413 aaPredicted RBP9.26□□□□□ -0.93
VPS28-202ENST00000377348 SLAQ13239 276 aa9.26□□□□□ -0.93
VPS28-202ENST00000377348 ESRGQ1W209 222 aa9.26□□□□□ -0.93
VPS28-202ENST00000377348 SCRT2Q9NQ03 307 aa9.26□□□□□ -0.93
VPS28-202ENST00000377348 MUC21A0A0G2JKD1 596 aa9.25□□□□□ -0.93
VPS28-202ENST00000377348 MUC21A0A140T8X8 626 aa9.25□□□□□ -0.93
VPS28-202ENST00000377348 C19orf71A6NCJ1 209 aa9.25□□□□□ -0.93
VPS28-202ENST00000377348 TMEM250H0YL14 139 aa9.25□□□□□ -0.93
VPS28-202ENST00000377348 M0R381 172 aa9.25□□□□□ -0.93
VPS28-202ENST00000377348 GZMBP10144 247 aa9.25□□□□□ -0.93
VPS28-202ENST00000377348 GYPEP15421 78 aa9.25□□□□□ -0.93
VPS28-202ENST00000377348 CCL18P55774 89 aa9.25□□□□□ -0.93
VPS28-202ENST00000377348 SMIM12Q96EX1 92 aa9.25□□□□□ -0.93
VPS28-202ENST00000377348 SAMD10Q9BYL1 202 aa9.25□□□□□ -0.93
VPS28-202ENST00000377348 PHLDA3Q9Y5J5 127 aa9.25□□□□□ -0.93
VPS28-202ENST00000377348 ICOSQ9Y6W8 199 aa9.25□□□□□ -0.93
VPS28-202ENST00000377348 K7EN84 100 aa9.24□□□□□ -0.93
VPS28-202ENST00000377348 K7EQD1 137 aa9.24□□□□□ -0.93
VPS28-202ENST00000377348 Q6ZSN1 163 aa9.24□□□□□ -0.93
VPS28-202ENST00000377348 SYT8Q8NBV8 401 aa9.24□□□□□ -0.93
VPS28-202ENST00000377348 OR10AG1Q8NH19 301 aa9.24□□□□□ -0.93
VPS28-202ENST00000377348 OCC1Q8TAD7 63 aa9.24□□□□□ -0.93
VPS28-202ENST00000377348 DAZAP1Q96EP5 407 aaKnown RBP9.24□□□□□ -0.93
VPS28-202ENST00000377348 A8MWV9 139 aa9.23□□□□□ -0.93
VPS28-202ENST00000377348 SRP19P09132 144 aaKnown RBP9.23□□□□□ -0.93
VPS28-202ENST00000377348 CXCL1P09341 107 aa9.23□□□□□ -0.93
VPS28-202ENST00000377348 MED14OSP0DP75 135 aa9.23□□□□□ -0.93
VPS28-202ENST00000377348 PIK3CD-AS1Q5SR53 167 aa9.23□□□□□ -0.93
VPS28-202ENST00000377348 SLC25A29Q8N8R3 303 aa9.23□□□□□ -0.93
VPS28-202ENST00000377348 OR2D3Q8NGH3 330 aa9.23□□□□□ -0.93
VPS28-202ENST00000377348 ZNRF2Q8NHG8 242 aa9.23□□□□□ -0.93
VPS28-202ENST00000377348 A0A087WWL8 130 aa9.22□□□□□ -0.93
VPS28-202ENST00000377348 SNAI2O43623 268 aa9.22□□□□□ -0.93
VPS28-202ENST00000377348 P01737 135 aa9.22□□□□□ -0.93
VPS28-202ENST00000377348 SRIP30626 198 aa9.22□□□□□ -0.93
VPS28-202ENST00000377348 FAM3BP58499 235 aaPredicted RBP9.22□□□□□ -0.93
VPS28-202ENST00000377348 SSTP61278 116 aa9.22□□□□□ -0.93
VPS28-202ENST00000377348 SRSF3P84103 164 aaKnown RBP9.22□□□□□ -0.93
VPS28-202ENST00000377348 MRPL23Q16540 153 aaKnown RBP9.22□□□□□ -0.93
VPS28-202ENST00000377348 FAM74A4Q5TZK3 123 aa9.22□□□□□ -0.93
VPS28-202ENST00000377348 UFSP1Q6NVU6 142 aa9.22□□□□□ -0.93
VPS28-202ENST00000377348 ZFP82Q8N141 532 aa9.22□□□□□ -0.93
VPS28-202ENST00000377348 NUDT10Q8NFP7 164 aa9.22□□□□□ -0.93
VPS28-202ENST00000377348 NUDT11Q96G61 164 aa9.22□□□□□ -0.93
VPS28-202ENST00000377348 SSBP4Q9BWG4 385 aaPredicted RBP9.22□□□□□ -0.93
VPS28-202ENST00000377348 RNASE7Q9H1E1 156 aaKnown RBP9.22□□□□□ -0.93
VPS28-202ENST00000377348 C9JQL5 133 aa9.21□□□□□ -0.94
VPS28-202ENST00000377348 CIDEAO60543 219 aa9.21□□□□□ -0.94
VPS28-202ENST00000377348 ZFP2Q6ZN57 461 aa9.21□□□□□ -0.94
VPS28-202ENST00000377348 SFRP2Q96HF1 295 aa9.21□□□□□ -0.94
VPS28-202ENST00000377348 TPPP3Q9BW30 176 aa9.21□□□□□ -0.94
VPS28-202ENST00000377348 BIN3Q9NQY0 253 aa9.21□□□□□ -0.94
VPS28-202ENST00000377348 TRBV6-4A0A1B0GX49 114 aa9.2□□□□□ -0.94
VPS28-202ENST00000377348 NXPH4O95158 308 aa9.2□□□□□ -0.94
VPS28-202ENST00000377348 OR5AL1P0C617 328 aa9.2□□□□□ -0.94
VPS28-202ENST00000377348 IGLC6P0CF74 106 aa9.2□□□□□ -0.94
VPS28-202ENST00000377348 RHOHQ15669 191 aa9.2□□□□□ -0.94
VPS28-202ENST00000377348 LYPD5Q6UWN5 251 aa9.2□□□□□ -0.94
VPS28-202ENST00000377348 NEGR1Q7Z3B1 354 aa9.2□□□□□ -0.94
VPS28-202ENST00000377348 FER1L6-AS1Q8NA97 138 aa9.2□□□□□ -0.94
VPS28-202ENST00000377348 SMIM7Q9BQ49 75 aa9.2□□□□□ -0.94
VPS28-202ENST00000377348 Q9UF83 564 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms