RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 VPREB3Q9UKI3 123 aa6.91□□□□□ -1.3
PDLIM5-222ENST00000615540 GTF3C1Q12789 2109 aa6.91□□□□□ -1.3
PDLIM5-222ENST00000615540 RPL39LQ96EH5 51 aaKnown RBP6.9□□□□□ -1.3
PDLIM5-222ENST00000615540 C1orf159Q96HA4 380 aa6.9□□□□□ -1.3
PDLIM5-222ENST00000615540 IGLC2P0DOY2 106 aa6.9□□□□□ -1.3
PDLIM5-222ENST00000615540 GDF5OSQ5U4N7 250 aa6.9□□□□□ -1.3
PDLIM5-222ENST00000615540 LY6G5BQ8NDX9 201 aa6.9□□□□□ -1.3
PDLIM5-222ENST00000615540 YPEL4Q96NS1 127 aa6.9□□□□□ -1.3
PDLIM5-222ENST00000615540 INS-IGF2F8WCM5 200 aa6.9□□□□□ -1.3
PDLIM5-222ENST00000615540 LY6LH3BQJ8 138 aa6.9□□□□□ -1.3
PDLIM5-222ENST00000615540 SAMD5Q5TGI4 173 aa6.9□□□□□ -1.3
PDLIM5-222ENST00000615540 TMEM190Q8WZ59 177 aa6.9□□□□□ -1.3
PDLIM5-222ENST00000615540 IGHV4OR15-8A0A075B7B6 117 aa6.9□□□□□ -1.31
PDLIM5-222ENST00000615540 A0A087WW49 117 aa6.9□□□□□ -1.31
PDLIM5-222ENST00000615540 IGLC3P0DOY3 106 aa6.9□□□□□ -1.31
PDLIM5-222ENST00000615540 COTL1Q14019 142 aa6.9□□□□□ -1.31
PDLIM5-222ENST00000615540 PAPPA-AS1Q5QFB9 102 aa6.9□□□□□ -1.31
PDLIM5-222ENST00000615540 CHAC1Q9BUX1 264 aa6.9□□□□□ -1.31
PDLIM5-222ENST00000615540 SHANK1Q9Y566 2161 aa6.9□□□□□ -1.31
PDLIM5-222ENST00000615540 J3QLI3 93 aa6.9□□□□□ -1.31
PDLIM5-222ENST00000615540 VCYO14598 125 aa6.9□□□□□ -1.31
PDLIM5-222ENST00000615540 BUB3O43684 328 aa6.9□□□□□ -1.31
PDLIM5-222ENST00000615540 CIRBPQ14011 172 aaKnown RBP6.9□□□□□ -1.31
PDLIM5-222ENST00000615540 KIR3DS1Q14943 382 aa6.9□□□□□ -1.31
PDLIM5-222ENST00000615540 PCNX1Q96RV3 2341 aa6.9□□□□□ -1.31
PDLIM5-222ENST00000615540 IGHV1OR15-1A0A075B7D0 117 aa6.89□□□□□ -1.31
PDLIM5-222ENST00000615540 H3BRM9 83 aa6.89□□□□□ -1.31
PDLIM5-222ENST00000615540 C20orf144Q9BQM9 153 aa6.89□□□□□ -1.31
PDLIM5-222ENST00000615540 OR13C6PQ8NH95 151 aa6.89□□□□□ -1.31
PDLIM5-222ENST00000615540 SPXQ9BT56 116 aa6.89□□□□□ -1.31
PDLIM5-222ENST00000615540 PLNP26678 52 aa6.89□□□□□ -1.31
PDLIM5-222ENST00000615540 RELNP78509 3460 aa6.89□□□□□ -1.31
PDLIM5-222ENST00000615540 SMPXQ9UHP9 88 aa6.89□□□□□ -1.31
PDLIM5-222ENST00000615540 K7ERU9 68 aa6.89□□□□□ -1.31
PDLIM5-222ENST00000615540 CDKN1BP46527 198 aa6.89□□□□□ -1.31
PDLIM5-222ENST00000615540 LMO4P61968 165 aa6.89□□□□□ -1.31
PDLIM5-222ENST00000615540 C16orf54Q6UWD8 224 aa6.89□□□□□ -1.31
PDLIM5-222ENST00000615540 ADARB2-AS1A8MUL3 147 aa6.88□□□□□ -1.31
PDLIM5-222ENST00000615540 DLEU1O43261 78 aa6.88□□□□□ -1.31
PDLIM5-222ENST00000615540 SNCGO76070 127 aa6.88□□□□□ -1.31
PDLIM5-222ENST00000615540 C2orf66Q6UXQ4 117 aa6.88□□□□□ -1.31
PDLIM5-222ENST00000615540 SVEP1Q4LDE5 3571 aa6.88□□□□□ -1.31
PDLIM5-222ENST00000615540 ZNF80P51504 273 aaPredicted RBP6.88□□□□□ -1.31
PDLIM5-222ENST00000615540 A0A1B0GWB2 263 aa6.88□□□□□ -1.31
PDLIM5-222ENST00000615540 K7EMI3 77 aa6.88□□□□□ -1.31
PDLIM5-222ENST00000615540 PIEZO2Q9H5I5 2752 aa6.88□□□□□ -1.31
PDLIM5-222ENST00000615540 ROS1P08922 2347 aa6.88□□□□□ -1.31
PDLIM5-222ENST00000615540 K7ERJ3 54 aa6.88□□□□□ -1.31
PDLIM5-222ENST00000615540 DEFB130BP0DP73 79 aa6.88□□□□□ -1.31
PDLIM5-222ENST00000615540 DEFB130AP0DP74 79 aa6.88□□□□□ -1.31
PDLIM5-222ENST00000615540 CHCHD5Q9BSY4 110 aa6.88□□□□□ -1.31
PDLIM5-222ENST00000615540 ARFGEF3Q5TH69 2177 aa6.87□□□□□ -1.31
PDLIM5-222ENST00000615540 RBAKDNA6NC62 111 aa6.87□□□□□ -1.31
PDLIM5-222ENST00000615540 TRPT1Q86TN4 253 aaKnown RBP6.87□□□□□ -1.31
PDLIM5-222ENST00000615540 KLF12Q9Y4X4 402 aa6.87□□□□□ -1.31
PDLIM5-222ENST00000615540 PKDREJQ9NTG1 2253 aa6.87□□□□□ -1.31
PDLIM5-222ENST00000615540 GAGE12JA6NER3 117 aa6.87□□□□□ -1.31
PDLIM5-222ENST00000615540 ESDP10768 282 aa6.87□□□□□ -1.31
PDLIM5-222ENST00000615540 GAGE1Q13065 139 aa6.87□□□□□ -1.31
PDLIM5-222ENST00000615540 GAGE4Q13068 117 aa6.87□□□□□ -1.31
PDLIM5-222ENST00000615540 GAGE5Q13069 117 aa6.87□□□□□ -1.31
PDLIM5-222ENST00000615540 GAGE13Q4V321 117 aa6.87□□□□□ -1.31
PDLIM5-222ENST00000615540 MRPL35Q9NZE8 188 aaKnown RBP6.87□□□□□ -1.31
PDLIM5-222ENST00000615540 H3BUA1 57 aa6.87□□□□□ -1.31
PDLIM5-222ENST00000615540 LGALS1P09382 135 aaKnown RBP6.87□□□□□ -1.31
PDLIM5-222ENST00000615540 NPSP0C0P6 89 aa6.87□□□□□ -1.31
PDLIM5-222ENST00000615540 J3QKU1 62 aa6.87□□□□□ -1.31
PDLIM5-222ENST00000615540 AZU1P20160 251 aa6.87□□□□□ -1.31
PDLIM5-222ENST00000615540 C10orf99Q6UWK7 81 aa6.87□□□□□ -1.31
PDLIM5-222ENST00000615540 OR9G4Q8NGQ1 327 aa6.87□□□□□ -1.31
PDLIM5-222ENST00000615540 C20orf173Q96LM9 149 aa6.87□□□□□ -1.31
PDLIM5-222ENST00000615540 TRAV13-1A0A0B4J241 112 aa6.86□□□□□ -1.31
PDLIM5-222ENST00000615540 SDHAF1A6NFY7 115 aa6.86□□□□□ -1.31
PDLIM5-222ENST00000615540 COX6CP09669 75 aa6.86□□□□□ -1.31
PDLIM5-222ENST00000615540 SMAD5-AS1Q9Y6J3 95 aa6.86□□□□□ -1.31
PDLIM5-222ENST00000615540 FRYQ5TBA9 3013 aa6.86□□□□□ -1.31
PDLIM5-222ENST00000615540 C19orf71A6NCJ1 209 aa6.86□□□□□ -1.31
PDLIM5-222ENST00000615540 TP73-AS1Q9UF72 201 aa6.86□□□□□ -1.31
PDLIM5-222ENST00000615540 MRPS16Q9Y3D3 137 aaKnown RBP6.86□□□□□ -1.31
PDLIM5-222ENST00000615540 A0A1B0GV72 72 aa6.86□□□□□ -1.31
PDLIM5-222ENST00000615540 IGF1P05019 195 aa6.86□□□□□ -1.31
PDLIM5-222ENST00000615540 ZNF479Q96JC4 524 aa6.86□□□□□ -1.31
PDLIM5-222ENST00000615540 A6NDX4 124 aa6.86□□□□□ -1.31
PDLIM5-222ENST00000615540 CADP27708 2225 aa6.85□□□□□ -1.31
PDLIM5-222ENST00000615540 I3L3M4 83 aa6.85□□□□□ -1.31
PDLIM5-222ENST00000615540 SEC11AP67812 179 aa6.85□□□□□ -1.31
PDLIM5-222ENST00000615540 MEGF9Q9H1U4 602 aa6.85□□□□□ -1.31
PDLIM5-222ENST00000615540 COX11Q9Y6N1 276 aa6.85□□□□□ -1.31
PDLIM5-222ENST00000615540 A0A096LPF7 62 aa6.85□□□□□ -1.31
PDLIM5-222ENST00000615540 GAGE12BA1L429 117 aa6.85□□□□□ -1.31
PDLIM5-222ENST00000615540 GAGE7O76087 117 aa6.85□□□□□ -1.31
PDLIM5-222ENST00000615540 GAGE12FP0CL80 117 aa6.85□□□□□ -1.31
PDLIM5-222ENST00000615540 GAGE12GP0CL81 117 aa6.85□□□□□ -1.31
PDLIM5-222ENST00000615540 GAGE12IP0CL82 117 aa6.85□□□□□ -1.31
PDLIM5-222ENST00000615540 ZNF747Q9BV97 191 aa6.85□□□□□ -1.31
PDLIM5-222ENST00000615540 LOXL1Q08397 574 aaPredicted RBP6.85□□□□□ -1.31
PDLIM5-222ENST00000615540 SUMO4Q6EEV6 95 aa6.85□□□□□ -1.31
PDLIM5-222ENST00000615540 PRRC2CQ9Y520 2896 aaKnown RBP6.85□□□□□ -1.31
PDLIM5-222ENST00000615540 USF3Q68DE3 2245 aa6.85□□□□□ -1.31
PDLIM5-222ENST00000615540 MALP21145 153 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms