RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 KRTAP10-5P60370 271 aa1.94□□□□□ -2.1
VPS35-209ENST00000568642 CDK6Q00534 326 aa1.94□□□□□ -2.1
VPS35-209ENST00000568642 FAM72AQ5TYM5 149 aa1.94□□□□□ -2.1
VPS35-209ENST00000568642 FAM72DQ6L9T8 149 aa1.94□□□□□ -2.1
VPS35-209ENST00000568642 PATE2Q6UY27 113 aa1.94□□□□□ -2.1
VPS35-209ENST00000568642 ZFP2Q6ZN57 461 aa1.94□□□□□ -2.1
VPS35-209ENST00000568642 FAM72BQ86X60 149 aa1.94□□□□□ -2.1
VPS35-209ENST00000568642 Q8N2B8 174 aa1.94□□□□□ -2.1
VPS35-209ENST00000568642 RNF175Q8N4F7 328 aa1.94□□□□□ -2.1
VPS35-209ENST00000568642 MMGT1Q8N4V1 131 aa1.94□□□□□ -2.1
VPS35-209ENST00000568642 ACBD7Q8N6N7 88 aa1.94□□□□□ -2.1
VPS35-209ENST00000568642 ZNF436-AS1Q8NC38 126 aaPredicted RBP1.94□□□□□ -2.1
VPS35-209ENST00000568642 OR8A1Q8NGG7 326 aa1.94□□□□□ -2.1
VPS35-209ENST00000568642 PP6455Q8WZ26 134 aa1.94□□□□□ -2.1
VPS35-209ENST00000568642 C16orf74Q96GX8 76 aa1.94□□□□□ -2.1
VPS35-209ENST00000568642 OR4C12Q96R67 309 aa1.94□□□□□ -2.1
VPS35-209ENST00000568642 TTTY13Q9BZ97 58 aa1.94□□□□□ -2.1
VPS35-209ENST00000568642 VCXQ9H320 206 aa1.94□□□□□ -2.1
VPS35-209ENST00000568642 NAT8Q9UHE5 227 aa1.94□□□□□ -2.1
VPS35-209ENST00000568642 FUT9Q9Y231 359 aa1.94□□□□□ -2.1
VPS35-209ENST00000568642 ALMS1Q8TCU4 4167 aa1.94□□□□□ -2.1
VPS35-209ENST00000568642 MYCBP2O75592 4640 aa1.94□□□□□ -2.1
VPS35-209ENST00000568642 DNAH3Q8TD57 4116 aa1.93□□□□□ -2.1
VPS35-209ENST00000568642 FAT2Q9NYQ8 4349 aa1.93□□□□□ -2.1
VPS35-209ENST00000568642 IGKV1OR2-108A0A075B7D4 117 aa1.93□□□□□ -2.1
VPS35-209ENST00000568642 TRAV30A0A087WSZ9 112 aa1.93□□□□□ -2.1
VPS35-209ENST00000568642 A6NDX4 124 aa1.93□□□□□ -2.1
VPS35-209ENST00000568642 LEUTXA8MZ59 168 aa1.93□□□□□ -2.1
VPS35-209ENST00000568642 SCO1O75880 301 aa1.93□□□□□ -2.1
VPS35-209ENST00000568642 LYZL6O75951 148 aa1.93□□□□□ -2.1
VPS35-209ENST00000568642 LY6G6CO95867 125 aa1.93□□□□□ -2.1
VPS35-209ENST00000568642 NCR2O95944 276 aa1.93□□□□□ -2.1
VPS35-209ENST00000568642 INSP01308 110 aa1.93□□□□□ -2.1
VPS35-209ENST00000568642 TNFP01375 233 aa1.93□□□□□ -2.1
VPS35-209ENST00000568642 IFNA17P01571 189 aa1.93□□□□□ -2.1
VPS35-209ENST00000568642 PRM2P04554 102 aa1.93□□□□□ -2.1
VPS35-209ENST00000568642 CRYGSP22914 178 aa1.93□□□□□ -2.1
VPS35-209ENST00000568642 HIST1H2BOP23527 126 aa1.93□□□□□ -2.1
VPS35-209ENST00000568642 CASP1P29466 404 aa1.93□□□□□ -2.1
VPS35-209ENST00000568642 HIST1H2BBP33778 126 aa1.93□□□□□ -2.1
VPS35-209ENST00000568642 HIST1H2BDP58876 126 aa1.93□□□□□ -2.1
VPS35-209ENST00000568642 COPZ1P61923 177 aa1.93□□□□□ -2.1
VPS35-209ENST00000568642 HIST1H2BCP62807 126 aa1.93□□□□□ -2.1
VPS35-209ENST00000568642 FOXF1Q12946 379 aa1.93□□□□□ -2.1
VPS35-209ENST00000568642 HIST2H2BEQ16778 126 aa1.93□□□□□ -2.1
VPS35-209ENST00000568642 C2orf83Q53S99 150 aa1.93□□□□□ -2.1
VPS35-209ENST00000568642 HIST2H2BFQ5QNW6 126 aaPredicted RBP1.93□□□□□ -2.1
VPS35-209ENST00000568642 ZNF660Q6AZW8 331 aaPredicted RBP1.93□□□□□ -2.1
VPS35-209ENST00000568642 RPS19BP1Q86WX3 136 aaKnown RBP1.93□□□□□ -2.1
VPS35-209ENST00000568642 KRTAP7-1Q8IUC3 87 aa1.93□□□□□ -2.1
VPS35-209ENST00000568642 ZNF695Q8IW36 515 aa1.93□□□□□ -2.1
VPS35-209ENST00000568642 CTAGE3PQ8IX95 158 aa1.93□□□□□ -2.1
VPS35-209ENST00000568642 C4orf33Q8N1A6 199 aa1.93□□□□□ -2.1
VPS35-209ENST00000568642 TEX29Q8N6K0 151 aa1.93□□□□□ -2.1
VPS35-209ENST00000568642 Q8N9W7 124 aa1.93□□□□□ -2.1
VPS35-209ENST00000568642 Q8NDZ9 215 aa1.93□□□□□ -2.1
VPS35-209ENST00000568642 PLPP5Q8NEB5 264 aa1.93□□□□□ -2.1
VPS35-209ENST00000568642 OR4S1Q8NGB4 309 aa1.93□□□□□ -2.1
VPS35-209ENST00000568642 PATE1Q8WXA2 126 aa1.93□□□□□ -2.1
VPS35-209ENST00000568642 HIST1H2BHQ93079 126 aa1.93□□□□□ -2.1
VPS35-209ENST00000568642 DPH3Q96FX2 82 aa1.93□□□□□ -2.1
VPS35-209ENST00000568642 HIST1H2BNQ99877 126 aa1.93□□□□□ -2.1
VPS35-209ENST00000568642 HIST1H2BMQ99879 126 aa1.93□□□□□ -2.1
VPS35-209ENST00000568642 PSMG3Q9BT73 122 aaPredicted RBP1.93□□□□□ -2.1
VPS35-209ENST00000568642 ADAT1Q9BUB4 502 aaKnown RBP1.93□□□□□ -2.1
VPS35-209ENST00000568642 CHCHD7Q9BUK0 85 aa1.93□□□□□ -2.1
VPS35-209ENST00000568642 PDCD10Q9BUL8 212 aa1.93□□□□□ -2.1
VPS35-209ENST00000568642 MRPL32Q9BYC8 188 aaKnown RBP1.93□□□□□ -2.1
VPS35-209ENST00000568642 IL36BQ9NZH7 164 aa1.93□□□□□ -2.1
VPS35-209ENST00000568642 LAMTOR3Q9UHA4 124 aa1.93□□□□□ -2.1
VPS35-209ENST00000568642 IGLV11-55A0A075B6I3 123 aa1.92□□□□□ -2.1
VPS35-209ENST00000568642 IGKV1D-37A0A075B6S9 117 aa1.92□□□□□ -2.1
VPS35-209ENST00000568642 A0A087WYN8 130 aa1.92□□□□□ -2.1
VPS35-209ENST00000568642 UQCRHLA0A096LP55 91 aa1.92□□□□□ -2.1
VPS35-209ENST00000568642 IGHV3-49A0A0A0MS15 119 aa1.92□□□□□ -2.1
VPS35-209ENST00000568642 KLF18A0A0U1RQI7 1052 aa1.92□□□□□ -2.1
VPS35-209ENST00000568642 IFITM5A6NNB3 132 aa1.92□□□□□ -2.1
VPS35-209ENST00000568642 PANO1I0J062 215 aa1.92□□□□□ -2.1
VPS35-209ENST00000568642 M0R143 59 aa1.92□□□□□ -2.1
VPS35-209ENST00000568642 KLF7O75840 302 aaPredicted RBP1.92□□□□□ -2.1
VPS35-209ENST00000568642 TRGV3P03979 118 aa1.92□□□□□ -2.1
VPS35-209ENST00000568642 MAS1P04201 325 aa1.92□□□□□ -2.1
VPS35-209ENST00000568642 PAEPP09466 180 aa1.92□□□□□ -2.1
VPS35-209ENST00000568642 ZNF705DP0CH99 300 aaPredicted RBP1.92□□□□□ -2.1
VPS35-209ENST00000568642 GZMBP10144 247 aa1.92□□□□□ -2.1
VPS35-209ENST00000568642 NPPCP23582 126 aa1.92□□□□□ -2.1
VPS35-209ENST00000568642 HIST1H4AP62805 103 aaKnown RBP1.92□□□□□ -2.1
VPS35-209ENST00000568642 BTG2P78543 158 aa1.92□□□□□ -2.1
VPS35-209ENST00000568642 MEF2BQ02080 365 aaPredicted RBP1.92□□□□□ -2.1
VPS35-209ENST00000568642 PLGLB1Q02325 96 aa1.92□□□□□ -2.1
VPS35-209ENST00000568642 BIKQ13323 160 aa1.92□□□□□ -2.1
VPS35-209ENST00000568642 BCL2L15Q5TBC7 163 aa1.92□□□□□ -2.1
VPS35-209ENST00000568642 Q5W150 140 aa1.92□□□□□ -2.1
VPS35-209ENST00000568642 C11orf42Q8N5U0 333 aa1.92□□□□□ -2.1
VPS35-209ENST00000568642 TCTEX1D1Q8N7M0 179 aa1.92□□□□□ -2.1
VPS35-209ENST00000568642 CCL4L1Q8NHW4 92 aa1.92□□□□□ -2.1
VPS35-209ENST00000568642 TYMSOSQ8TAI1 123 aa1.92□□□□□ -2.1
VPS35-209ENST00000568642 MAGOHBQ96A72 148 aaKnown RBP1.92□□□□□ -2.1
VPS35-209ENST00000568642 PKMYT1Q99640 499 aa1.92□□□□□ -2.1
VPS35-209ENST00000568642 MED12LQ86YW9 2145 aa1.91□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms