RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 SH2D1AO60880 128 aa6.95□□□□□ -1.3
CLK3-208ENST00000562626 SRP19P09132 144 aaKnown RBP6.95□□□□□ -1.3
CLK3-208ENST00000562626 CENPWQ5EE01 88 aa6.95□□□□□ -1.3
CLK3-208ENST00000562626 SAPCD1Q5SSQ6 148 aa6.95□□□□□ -1.3
CLK3-208ENST00000562626 TXNDC17Q9BRA2 123 aa6.95□□□□□ -1.3
CLK3-208ENST00000562626 NOP10Q9NPE3 64 aaKnown RBP6.95□□□□□ -1.3
CLK3-208ENST00000562626 MED9Q9NWA0 146 aa6.95□□□□□ -1.3
CLK3-208ENST00000562626 IGHV3-16A0A0C4DH30 117 aa6.94□□□□□ -1.3
CLK3-208ENST00000562626 CXorf65A6NEN9 183 aa6.94□□□□□ -1.3
CLK3-208ENST00000562626 PFN1P07737 140 aaKnown RBP6.94□□□□□ -1.3
CLK3-208ENST00000562626 ZNF674Q2M3X9 581 aa6.94□□□□□ -1.3
CLK3-208ENST00000562626 TDRG1Q3Y452 100 aa6.94□□□□□ -1.3
CLK3-208ENST00000562626 CASC10Q5T4H9 136 aa6.94□□□□□ -1.3
CLK3-208ENST00000562626 Q6ZTI0 123 aa6.94□□□□□ -1.3
CLK3-208ENST00000562626 LINC00612Q8N6U2 182 aa6.94□□□□□ -1.3
CLK3-208ENST00000562626 ZFP30Q9Y2G7 519 aa6.94□□□□□ -1.3
CLK3-208ENST00000562626 ALMS1Q8TCU4 4167 aa6.94□□□□□ -1.3
CLK3-208ENST00000562626 RYR2Q92736 4967 aa6.94□□□□□ -1.3
CLK3-208ENST00000562626 TMEM189A5PLL7 270 aa6.93□□□□□ -1.3
CLK3-208ENST00000562626 PDE6DO43924 150 aa6.93□□□□□ -1.3
CLK3-208ENST00000562626 SPART-AS1P0CW21 52 aa6.93□□□□□ -1.3
CLK3-208ENST00000562626 TCL1AP56279 114 aa6.93□□□□□ -1.3
CLK3-208ENST00000562626 RPL19P84098 196 aaKnown RBP6.93□□□□□ -1.3
CLK3-208ENST00000562626 FAM159AQ6UWV7 190 aa6.93□□□□□ -1.3
CLK3-208ENST00000562626 ZNF493Q6ZR52 646 aa6.93□□□□□ -1.3
CLK3-208ENST00000562626 BAGE2Q86Y30 109 aa6.93□□□□□ -1.3
CLK3-208ENST00000562626 PHLDA1Q8WV24 401 aaPredicted RBP6.93□□□□□ -1.3
CLK3-208ENST00000562626 PARLQ9H300 379 aa6.93□□□□□ -1.3
CLK3-208ENST00000562626 MRPL16Q9NX20 251 aaKnown RBP6.93□□□□□ -1.3
CLK3-208ENST00000562626 RYR1P21817 5038 aa6.93□□□□□ -1.3
CLK3-208ENST00000562626 DNAH1Q9P2D7 4330 aa6.92□□□□□ -1.3
CLK3-208ENST00000562626 TMSB15BA0A087X1C1 80 aa6.92□□□□□ -1.3
CLK3-208ENST00000562626 GAGE12BA1L429 117 aa6.92□□□□□ -1.3
CLK3-208ENST00000562626 KRBOX1C9JBD0 128 aa6.92□□□□□ -1.3
CLK3-208ENST00000562626 K7EN84 100 aa6.92□□□□□ -1.3
CLK3-208ENST00000562626 M0R036 132 aa6.92□□□□□ -1.3
CLK3-208ENST00000562626 SPINK4O60575 86 aa6.92□□□□□ -1.3
CLK3-208ENST00000562626 GAGE7O76087 117 aa6.92□□□□□ -1.3
CLK3-208ENST00000562626 S100A9P06702 114 aaKnown RBP6.92□□□□□ -1.3
CLK3-208ENST00000562626 GAGE12FP0CL80 117 aa6.92□□□□□ -1.3
CLK3-208ENST00000562626 GAGE12GP0CL81 117 aa6.92□□□□□ -1.3
CLK3-208ENST00000562626 GAGE12IP0CL82 117 aa6.92□□□□□ -1.3
CLK3-208ENST00000562626 DEFB130BP0DP73 79 aa6.92□□□□□ -1.3
CLK3-208ENST00000562626 DEFB130AP0DP74 79 aa6.92□□□□□ -1.3
CLK3-208ENST00000562626 RNASE3P12724 160 aaKnown RBP6.92□□□□□ -1.3
CLK3-208ENST00000562626 OR5I1Q13606 314 aa6.92□□□□□ -1.3
CLK3-208ENST00000562626 IBA57Q5T440 356 aaKnown RBP6.92□□□□□ -1.3
CLK3-208ENST00000562626 PRR27Q6MZM9 219 aa6.92□□□□□ -1.3
CLK3-208ENST00000562626 EIF5A2Q9GZV4 153 aaKnown RBP6.92□□□□□ -1.3
CLK3-208ENST00000562626 TIMM8BQ9Y5J9 83 aaPredicted RBP6.92□□□□□ -1.3
CLK3-208ENST00000562626 GRIFINA4D1Z8 144 aa6.91□□□□□ -1.3
CLK3-208ENST00000562626 LYRM9A8MSI8 78 aa6.91□□□□□ -1.3
CLK3-208ENST00000562626 FABP5P3A8MUU1 101 aa6.91□□□□□ -1.3
CLK3-208ENST00000562626 SNURFLB1AK76 121 aa6.91□□□□□ -1.3
CLK3-208ENST00000562626 TMEM250H0YL14 139 aa6.91□□□□□ -1.3
CLK3-208ENST00000562626 TAGLN2P37802 199 aaKnown RBP6.91□□□□□ -1.3
CLK3-208ENST00000562626 CEBPGP53567 150 aa6.91□□□□□ -1.3
CLK3-208ENST00000562626 DAD1P61803 113 aa6.91□□□□□ -1.3
CLK3-208ENST00000562626 ZNF415Q09FC8 603 aa6.91□□□□□ -1.3
CLK3-208ENST00000562626 DAZ2Q13117 558 aaKnown RBP6.91□□□□□ -1.3
CLK3-208ENST00000562626 CLLU1Q5K131 121 aa6.91□□□□□ -1.3
CLK3-208ENST00000562626 FAM162BQ5T6X4 162 aa6.91□□□□□ -1.3
CLK3-208ENST00000562626 OCC1Q8TAD7 63 aa6.91□□□□□ -1.3
CLK3-208ENST00000562626 C9orf85Q96MD7 179 aa6.91□□□□□ -1.3
CLK3-208ENST00000562626 SDF2L1Q9HCN8 221 aa6.91□□□□□ -1.3
CLK3-208ENST00000562626 TRGV11A0A075B6L2 103 aa6.9□□□□□ -1.3
CLK3-208ENST00000562626 TRGV1A0A0A0MS02 117 aa6.9□□□□□ -1.3
CLK3-208ENST00000562626 C19orf71A6NCJ1 209 aa6.9□□□□□ -1.3
CLK3-208ENST00000562626 C3orf84H3BNL1 204 aa6.9□□□□□ -1.3
CLK3-208ENST00000562626 ORM1P02763 201 aa6.9□□□□□ -1.3
CLK3-208ENST00000562626 MGST1P10620 155 aaKnown RBP6.9□□□□□ -1.3
CLK3-208ENST00000562626 HTN3P15516 51 aa6.9□□□□□ -1.3
CLK3-208ENST00000562626 HOXA5P20719 270 aa6.9□□□□□ -1.3
CLK3-208ENST00000562626 GNG4P50150 75 aa6.9□□□□□ -1.3
CLK3-208ENST00000562626 LINC01559Q495D7 138 aa6.9□□□□□ -1.3
CLK3-208ENST00000562626 CEMP1Q6PRD7 247 aaPredicted RBP6.9□□□□□ -1.3
CLK3-208ENST00000562626 POM121L12Q8N7R1 296 aa6.9□□□□□ -1.3
CLK3-208ENST00000562626 DEFB131BA0A096LNP1 70 aa6.89□□□□□ -1.31
CLK3-208ENST00000562626 B4DEV8 164 aa6.89□□□□□ -1.31
CLK3-208ENST00000562626 C9JCJ5 164 aa6.89□□□□□ -1.31
CLK3-208ENST00000562626 H3BVH4 76 aa6.89□□□□□ -1.31
CLK3-208ENST00000562626 GZMBP10144 247 aa6.89□□□□□ -1.31
CLK3-208ENST00000562626 KCNS1Q96KK3 526 aa6.89□□□□□ -1.31
CLK3-208ENST00000562626 VPS13DQ5THJ4 4388 aa6.89□□□□□ -1.31
CLK3-208ENST00000562626 TRAV10A0A0B4J240 114 aa6.88□□□□□ -1.31
CLK3-208ENST00000562626 IGHV3-53P01767 116 aa6.88□□□□□ -1.31
CLK3-208ENST00000562626 DNLZQ5SXM8 178 aa6.88□□□□□ -1.31
CLK3-208ENST00000562626 SMIM7Q9BQ49 75 aa6.88□□□□□ -1.31
CLK3-208ENST00000562626 RNASE7Q9H1E1 156 aaKnown RBP6.88□□□□□ -1.31
CLK3-208ENST00000562626 SACSQ9NZJ4 4579 aa6.87□□□□□ -1.31
CLK3-208ENST00000562626 NUPR2A6NF83 97 aa6.87□□□□□ -1.31
CLK3-208ENST00000562626 ZNF727A8MUV8 499 aa6.87□□□□□ -1.31
CLK3-208ENST00000562626 NDUFS6O75380 124 aaKnown RBP6.87□□□□□ -1.31
CLK3-208ENST00000562626 SFTA3P0C7M3 94 aa6.87□□□□□ -1.31
CLK3-208ENST00000562626 ARMS2P0C7Q2 107 aa6.87□□□□□ -1.31
CLK3-208ENST00000562626 NUDT10Q8NFP7 164 aa6.87□□□□□ -1.31
CLK3-208ENST00000562626 RASL10AQ92737 203 aa6.87□□□□□ -1.31
CLK3-208ENST00000562626 NUDT11Q96G61 164 aa6.87□□□□□ -1.31
CLK3-208ENST00000562626 ZNF479Q96JC4 524 aa6.87□□□□□ -1.31
CLK3-208ENST00000562626 JPT2Q9H910 190 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms