RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 GSN-AS1Q9NRJ2 163 aa9.18□□□□□ -0.94
SHMT2-227ENST00000557269 CELA1Q9UNI1 258 aa9.18□□□□□ -0.94
SHMT2-227ENST00000557269 LINC00862A6NCI5 91 aa9.17□□□□□ -0.94
SHMT2-227ENST00000557269 ZNF727A8MUV8 499 aa9.17□□□□□ -0.94
SHMT2-227ENST00000557269 TYMSP04818 313 aa9.17□□□□□ -0.94
SHMT2-227ENST00000557269 FAM159AQ6UWV7 190 aa9.17□□□□□ -0.94
SHMT2-227ENST00000557269 TMEM263Q8WUH6 116 aaKnown RBP9.17□□□□□ -0.94
SHMT2-227ENST00000557269 C16orf74Q96GX8 76 aa9.17□□□□□ -0.94
SHMT2-227ENST00000557269 SMIM7Q9BQ49 75 aa9.17□□□□□ -0.94
SHMT2-227ENST00000557269 IGHV3-16A0A0C4DH30 117 aa9.16□□□□□ -0.94
SHMT2-227ENST00000557269 KRBOX1C9JBD0 128 aa9.16□□□□□ -0.94
SHMT2-227ENST00000557269 M0R036 132 aa9.16□□□□□ -0.94
SHMT2-227ENST00000557269 ORM1P02763 201 aa9.16□□□□□ -0.94
SHMT2-227ENST00000557269 RPL19P84098 196 aaKnown RBP9.16□□□□□ -0.94
SHMT2-227ENST00000557269 ZNF493Q6ZR52 646 aa9.16□□□□□ -0.94
SHMT2-227ENST00000557269 COMMD7Q86VX2 200 aa9.16□□□□□ -0.94
SHMT2-227ENST00000557269 IL17DQ8TAD2 202 aa9.16□□□□□ -0.94
SHMT2-227ENST00000557269 SMIM12Q96EX1 92 aa9.16□□□□□ -0.94
SHMT2-227ENST00000557269 STAB2Q8WWQ8 2551 aa9.15□□□□□ -0.94
SHMT2-227ENST00000557269 TMSB15BA0A087X1C1 80 aa9.15□□□□□ -0.94
SHMT2-227ENST00000557269 TMEM189A5PLL7 270 aa9.15□□□□□ -0.94
SHMT2-227ENST00000557269 C19orf71A6NCJ1 209 aa9.15□□□□□ -0.94
SHMT2-227ENST00000557269 SFTA3P0C7M3 94 aa9.15□□□□□ -0.94
SHMT2-227ENST00000557269 FAM222AQ5U5X8 452 aa9.15□□□□□ -0.94
SHMT2-227ENST00000557269 SDF2L1Q9HCN8 221 aa9.15□□□□□ -0.94
SHMT2-227ENST00000557269 NOP10Q9NPE3 64 aaKnown RBP9.15□□□□□ -0.94
SHMT2-227ENST00000557269 DKK2Q9UBU2 259 aa9.15□□□□□ -0.94
SHMT2-227ENST00000557269 GRIFINA4D1Z8 144 aa9.14□□□□□ -0.95
SHMT2-227ENST00000557269 B4DEV8 164 aa9.14□□□□□ -0.95
SHMT2-227ENST00000557269 TCL1AP56279 114 aa9.14□□□□□ -0.95
SHMT2-227ENST00000557269 NANOS2P60321 138 aaKnown RBP9.14□□□□□ -0.95
SHMT2-227ENST00000557269 LINC01559Q495D7 138 aa9.14□□□□□ -0.95
SHMT2-227ENST00000557269 SOHLH1Q5JUK2 328 aa9.14□□□□□ -0.95
SHMT2-227ENST00000557269 IBA57Q5T440 356 aaKnown RBP9.14□□□□□ -0.95
SHMT2-227ENST00000557269 LINC01551Q86U37 167 aa9.14□□□□□ -0.95
SHMT2-227ENST00000557269 KCNS1Q96KK3 526 aa9.14□□□□□ -0.95
SHMT2-227ENST00000557269 TRGV11A0A075B6L2 103 aa9.13□□□□□ -0.95
SHMT2-227ENST00000557269 SPART-AS1P0CW21 52 aa9.13□□□□□ -0.95
SHMT2-227ENST00000557269 RNASE3P12724 160 aaKnown RBP9.13□□□□□ -0.95
SHMT2-227ENST00000557269 DAZ2Q13117 558 aaKnown RBP9.13□□□□□ -0.95
SHMT2-227ENST00000557269 TMEM241Q24JQ0 296 aa9.13□□□□□ -0.95
SHMT2-227ENST00000557269 C12orf74Q32Q52 190 aa9.13□□□□□ -0.95
SHMT2-227ENST00000557269 FAM74A3Q4VXF1 159 aa9.13□□□□□ -0.95
SHMT2-227ENST00000557269 UQCC3Q6UW78 93 aa9.13□□□□□ -0.95
SHMT2-227ENST00000557269 NUDT10Q8NFP7 164 aa9.13□□□□□ -0.95
SHMT2-227ENST00000557269 C11orf45Q8TAV5 145 aa9.13□□□□□ -0.95
SHMT2-227ENST00000557269 NUDT11Q96G61 164 aa9.13□□□□□ -0.95
SHMT2-227ENST00000557269 RNASE7Q9H1E1 156 aaKnown RBP9.13□□□□□ -0.95
SHMT2-227ENST00000557269 TIMM8BQ9Y5J9 83 aaPredicted RBP9.13□□□□□ -0.95
SHMT2-227ENST00000557269 LY96Q9Y6Y9 160 aa9.13□□□□□ -0.95
SHMT2-227ENST00000557269 CXorf65A6NEN9 183 aa9.12□□□□□ -0.95
SHMT2-227ENST00000557269 SNURFLB1AK76 121 aa9.12□□□□□ -0.95
SHMT2-227ENST00000557269 RPL23P62829 140 aaKnown RBP9.12□□□□□ -0.95
SHMT2-227ENST00000557269 ZNF415Q09FC8 603 aa9.12□□□□□ -0.95
SHMT2-227ENST00000557269 Q6ZTI0 123 aa9.12□□□□□ -0.95
SHMT2-227ENST00000557269 C9orf85Q96MD7 179 aa9.12□□□□□ -0.95
SHMT2-227ENST00000557269 NAT8Q9UHE5 227 aa9.12□□□□□ -0.95
SHMT2-227ENST00000557269 LYRM9A8MSI8 78 aa9.11□□□□□ -0.95
SHMT2-227ENST00000557269 SPINK4O60575 86 aa9.11□□□□□ -0.95
SHMT2-227ENST00000557269 DEFB130BP0DP73 79 aa9.11□□□□□ -0.95
SHMT2-227ENST00000557269 DEFB130AP0DP74 79 aa9.11□□□□□ -0.95
SHMT2-227ENST00000557269 GZMBP10144 247 aa9.11□□□□□ -0.95
SHMT2-227ENST00000557269 ADCYAP1P18509 176 aa9.11□□□□□ -0.95
SHMT2-227ENST00000557269 DNLZQ5SXM8 178 aa9.11□□□□□ -0.95
SHMT2-227ENST00000557269 LINC00612Q8N6U2 182 aa9.11□□□□□ -0.95
SHMT2-227ENST00000557269 OR2D3Q8NGH3 330 aa9.11□□□□□ -0.95
SHMT2-227ENST00000557269 DAZAP1Q96EP5 407 aaKnown RBP9.11□□□□□ -0.95
SHMT2-227ENST00000557269 MRPL16Q9NX20 251 aaKnown RBP9.11□□□□□ -0.95
SHMT2-227ENST00000557269 GAGE12BA1L429 117 aa9.1□□□□□ -0.95
SHMT2-227ENST00000557269 TMEM218A2RU14 115 aa9.1□□□□□ -0.95
SHMT2-227ENST00000557269 H3BVH4 76 aa9.1□□□□□ -0.95
SHMT2-227ENST00000557269 GAGE7O76087 117 aa9.1□□□□□ -0.95
SHMT2-227ENST00000557269 P01737 135 aa9.1□□□□□ -0.95
SHMT2-227ENST00000557269 GAGE12FP0CL80 117 aa9.1□□□□□ -0.95
SHMT2-227ENST00000557269 GAGE12GP0CL81 117 aa9.1□□□□□ -0.95
SHMT2-227ENST00000557269 GAGE12IP0CL82 117 aa9.1□□□□□ -0.95
SHMT2-227ENST00000557269 ASIPP42127 132 aa9.1□□□□□ -0.95
SHMT2-227ENST00000557269 ADIRFQ15847 76 aa9.1□□□□□ -0.95
SHMT2-227ENST00000557269 Q6ZTC4 211 aa9.1□□□□□ -0.95
SHMT2-227ENST00000557269 ISOC2Q96AB3 205 aa9.1□□□□□ -0.95
SHMT2-227ENST00000557269 WWC2-AS2Q96NR7 200 aa9.1□□□□□ -0.95
SHMT2-227ENST00000557269 BIN3Q9NQY0 253 aa9.1□□□□□ -0.95
SHMT2-227ENST00000557269 TRGV1A0A0A0MS02 117 aa9.09□□□□□ -0.95
SHMT2-227ENST00000557269 ARMS2P0C7Q2 107 aa9.09□□□□□ -0.95
SHMT2-227ENST00000557269 ERVFC1-1P60608 527 aa9.09□□□□□ -0.95
SHMT2-227ENST00000557269 FAM231DQ6ZW35 169 aa9.09□□□□□ -0.95
SHMT2-227ENST00000557269 RPP21Q9H633 154 aaKnown RBP9.09□□□□□ -0.95
SHMT2-227ENST00000557269 S100A4P26447 101 aaKnown RBP9.08□□□□□ -0.96
SHMT2-227ENST00000557269 DAD1P61803 113 aa9.08□□□□□ -0.96
SHMT2-227ENST00000557269 SPXQ9BT56 116 aa9.08□□□□□ -0.96
SHMT2-227ENST00000557269 SCRT2Q9NQ03 307 aa9.08□□□□□ -0.96
SHMT2-227ENST00000557269 IL36BQ9NZH7 164 aa9.08□□□□□ -0.96
SHMT2-227ENST00000557269 MUC21A0A0G2JKD1 596 aa9.07□□□□□ -0.96
SHMT2-227ENST00000557269 MUC21A0A140T8X8 626 aa9.07□□□□□ -0.96
SHMT2-227ENST00000557269 TEX48A0A1B0GUV7 120 aa9.07□□□□□ -0.96
SHMT2-227ENST00000557269 M0R2P5 195 aa9.07□□□□□ -0.96
SHMT2-227ENST00000557269 GATCO43716 136 aaKnown RBP9.07□□□□□ -0.96
SHMT2-227ENST00000557269 CXCL1P09341 107 aa9.07□□□□□ -0.96
SHMT2-227ENST00000557269 LGALS9BQ3B8N2 356 aa9.07□□□□□ -0.96
SHMT2-227ENST00000557269 SLC7A5P1Q8MH63 180 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 130.2 ms