RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 DKK2Q9UBU2 259 aa12.58□□□□□ -0.4
CLSTN3-210ENST00000540931 NAGKQ9UJ70 344 aa12.58□□□□□ -0.4
CLSTN3-210ENST00000540931 ORM1P02763 201 aa12.57□□□□□ -0.4
CLSTN3-210ENST00000540931 CXCL1P09341 107 aa12.57□□□□□ -0.4
CLSTN3-210ENST00000540931 UQCC3Q6UW78 93 aa12.57□□□□□ -0.4
CLSTN3-210ENST00000540931 SMIM7Q9BQ49 75 aa12.57□□□□□ -0.4
CLSTN3-210ENST00000540931 DERL1Q9BUN8 251 aa12.57□□□□□ -0.4
CLSTN3-210ENST00000540931 STAB2Q8WWQ8 2551 aa12.56□□□□□ -0.4
CLSTN3-210ENST00000540931 ZNF727A8MUV8 499 aa12.56□□□□□ -0.4
CLSTN3-210ENST00000540931 C3orf84H3BNL1 204 aa12.56□□□□□ -0.4
CLSTN3-210ENST00000540931 MGST1P10620 155 aaKnown RBP12.56□□□□□ -0.4
CLSTN3-210ENST00000540931 AZU1P20160 251 aa12.56□□□□□ -0.4
CLSTN3-210ENST00000540931 ZNF80P51504 273 aaPredicted RBP12.56□□□□□ -0.4
CLSTN3-210ENST00000540931 EMP1P54849 157 aa12.56□□□□□ -0.4
CLSTN3-210ENST00000540931 RPS20P60866 119 aaKnown RBP12.56□□□□□ -0.4
CLSTN3-210ENST00000540931 LINC01559Q495D7 138 aa12.56□□□□□ -0.4
CLSTN3-210ENST00000540931 MUC21Q5SSG8 566 aa12.56□□□□□ -0.4
CLSTN3-210ENST00000540931 DNLZQ5SXM8 178 aa12.56□□□□□ -0.4
CLSTN3-210ENST00000540931 PCNPQ8WW12 178 aaKnown RBP12.56□□□□□ -0.4
CLSTN3-210ENST00000540931 B4DEV8 164 aa12.55□□□□□ -0.4
CLSTN3-210ENST00000540931 SH2D1AO60880 128 aa12.55□□□□□ -0.4
CLSTN3-210ENST00000540931 S100A4P26447 101 aaKnown RBP12.55□□□□□ -0.4
CLSTN3-210ENST00000540931 ASIPP42127 132 aa12.55□□□□□ -0.4
CLSTN3-210ENST00000540931 CEBPGP53567 150 aa12.55□□□□□ -0.4
CLSTN3-210ENST00000540931 DAD1P61803 113 aa12.55□□□□□ -0.4
CLSTN3-210ENST00000540931 SOHLH1Q5JUK2 328 aa12.55□□□□□ -0.4
CLSTN3-210ENST00000540931 PIK3CD-AS1Q5SR53 167 aa12.55□□□□□ -0.4
CLSTN3-210ENST00000540931 FAM222AQ5U5X8 452 aa12.55□□□□□ -0.4
CLSTN3-210ENST00000540931 MUC7Q8TAX7 377 aa12.55□□□□□ -0.4
CLSTN3-210ENST00000540931 DEFB4AO15263 64 aa12.54□□□□□ -0.4
CLSTN3-210ENST00000540931 C11orf72Q8NBR9 251 aa12.54□□□□□ -0.4
CLSTN3-210ENST00000540931 PTH2Q96A98 100 aa12.54□□□□□ -0.4
CLSTN3-210ENST00000540931 C18orf15Q96N68 181 aa12.54□□□□□ -0.4
CLSTN3-210ENST00000540931 NOP10Q9NPE3 64 aaKnown RBP12.54□□□□□ -0.4
CLSTN3-210ENST00000540931 PLAC8L1A1L4L8 177 aa12.53□□□□□ -0.4
CLSTN3-210ENST00000540931 NUPR2A6NF83 97 aa12.53□□□□□ -0.4
CLSTN3-210ENST00000540931 CIDEAO60543 219 aa12.53□□□□□ -0.4
CLSTN3-210ENST00000540931 P01737 135 aa12.53□□□□□ -0.4
CLSTN3-210ENST00000540931 TYMSP04818 313 aa12.53□□□□□ -0.4
CLSTN3-210ENST00000540931 CRIP1P50238 77 aa12.53□□□□□ -0.4
CLSTN3-210ENST00000540931 OR5I1Q13606 314 aa12.53□□□□□ -0.4
CLSTN3-210ENST00000540931 TMEM241Q24JQ0 296 aa12.53□□□□□ -0.4
CLSTN3-210ENST00000540931 PRR27Q6MZM9 219 aa12.53□□□□□ -0.4
CLSTN3-210ENST00000540931 NHLRC2Q8NBF2 726 aa12.53□□□□□ -0.4
CLSTN3-210ENST00000540931 GSN-AS1Q9NRJ2 163 aa12.53□□□□□ -0.4
CLSTN3-210ENST00000540931 TRBV20OR9-2A0A075B6H5 130 aa12.52□□□□□ -0.41
CLSTN3-210ENST00000540931 IGHV3-16A0A0C4DH30 117 aa12.52□□□□□ -0.41
CLSTN3-210ENST00000540931 KRBOX1C9JBD0 128 aa12.52□□□□□ -0.41
CLSTN3-210ENST00000540931 M0R2P5 195 aa12.52□□□□□ -0.41
CLSTN3-210ENST00000540931 IGLV2-8P01709 118 aa12.52□□□□□ -0.41
CLSTN3-210ENST00000540931 MED14OSP0DP75 135 aa12.52□□□□□ -0.41
CLSTN3-210ENST00000540931 IL36BQ9NZH7 164 aa12.52□□□□□ -0.41
CLSTN3-210ENST00000540931 NAT8Q9UHE5 227 aa12.52□□□□□ -0.41
CLSTN3-210ENST00000540931 KLK5Q9Y337 293 aaPredicted RBP12.52□□□□□ -0.41
CLSTN3-210ENST00000540931 TENM2Q9NT68 2774 aa12.52□□□□□ -0.41
CLSTN3-210ENST00000540931 TRAV10A0A0B4J240 114 aa12.51□□□□□ -0.41
CLSTN3-210ENST00000540931 SPINK4O60575 86 aa12.51□□□□□ -0.41
CLSTN3-210ENST00000540931 TCTAP57738 103 aa12.51□□□□□ -0.41
CLSTN3-210ENST00000540931 FAM231DQ6ZW35 169 aa12.51□□□□□ -0.41
CLSTN3-210ENST00000540931 LINC00612Q8N6U2 182 aa12.51□□□□□ -0.41
CLSTN3-210ENST00000540931 OCC1Q8TAD7 63 aa12.51□□□□□ -0.41
CLSTN3-210ENST00000540931 RASL10AQ92737 203 aa12.51□□□□□ -0.41
CLSTN3-210ENST00000540931 FAM210BQ96KR6 192 aa12.51□□□□□ -0.41
CLSTN3-210ENST00000540931 IGKV3D-20A0A0C4DH25 116 aa12.5□□□□□ -0.41
CLSTN3-210ENST00000540931 GNRH2O43555 120 aa12.5□□□□□ -0.41
CLSTN3-210ENST00000540931 ATP5G1P05496 136 aa12.5□□□□□ -0.41
CLSTN3-210ENST00000540931 SYT8Q8NBV8 401 aa12.5□□□□□ -0.41
CLSTN3-210ENST00000540931 DYNC2H1Q8NCM8 4307 aaKnown RBP12.5□□□□□ -0.41
CLSTN3-210ENST00000540931 RYR2Q92736 4967 aa12.5□□□□□ -0.41
CLSTN3-210ENST00000540931 HUWE1Q7Z6Z7 4374 aaKnown RBP12.49□□□□□ -0.41
CLSTN3-210ENST00000540931 TRGV2A0A075B6R0 118 aa12.49□□□□□ -0.41
CLSTN3-210ENST00000540931 C19orf71A6NCJ1 209 aa12.49□□□□□ -0.41
CLSTN3-210ENST00000540931 PNRC1Q12796 327 aaPredicted RBP12.49□□□□□ -0.41
CLSTN3-210ENST00000540931 C12orf74Q32Q52 190 aa12.49□□□□□ -0.41
CLSTN3-210ENST00000540931 Q6ZQT7 251 aa12.49□□□□□ -0.41
CLSTN3-210ENST00000540931 C15orf54Q8N8G6 183 aa12.49□□□□□ -0.41
CLSTN3-210ENST00000540931 MDFICQ9P1T7 246 aa12.49□□□□□ -0.41
CLSTN3-210ENST00000540931 C11orf21Q9P2W6 132 aa12.49□□□□□ -0.41
CLSTN3-210ENST00000540931 TRGV1A0A0A0MS02 117 aa12.48□□□□□ -0.41
CLSTN3-210ENST00000540931 A0A1W2PPQ1 181 aa12.48□□□□□ -0.41
CLSTN3-210ENST00000540931 LINC00862A6NCI5 91 aa12.48□□□□□ -0.41
CLSTN3-210ENST00000540931 M0R036 132 aa12.48□□□□□ -0.41
CLSTN3-210ENST00000540931 PRM2P04554 102 aa12.48□□□□□ -0.41
CLSTN3-210ENST00000540931 DEFB130BP0DP73 79 aa12.48□□□□□ -0.41
CLSTN3-210ENST00000540931 DEFB130AP0DP74 79 aa12.48□□□□□ -0.41
CLSTN3-210ENST00000540931 NANOS2P60321 138 aaKnown RBP12.48□□□□□ -0.41
CLSTN3-210ENST00000540931 SLAQ13239 276 aa12.48□□□□□ -0.41
CLSTN3-210ENST00000540931 LINC01551Q86U37 167 aa12.48□□□□□ -0.41
CLSTN3-210ENST00000540931 C9orf85Q96MD7 179 aa12.48□□□□□ -0.41
CLSTN3-210ENST00000540931 CELA1Q9UNI1 258 aa12.48□□□□□ -0.41
CLSTN3-210ENST00000540931 F2Z2F3 143 aa12.47□□□□□ -0.41
CLSTN3-210ENST00000540931 SFTA3P0C7M3 94 aa12.47□□□□□ -0.41
CLSTN3-210ENST00000540931 ERVFC1-1P60608 527 aa12.47□□□□□ -0.41
CLSTN3-210ENST00000540931 CT83Q5H943 113 aa12.47□□□□□ -0.41
CLSTN3-210ENST00000540931 OR2D3Q8NGH3 330 aa12.47□□□□□ -0.41
CLSTN3-210ENST00000540931 PHLDA1Q8WV24 401 aaPredicted RBP12.47□□□□□ -0.41
CLSTN3-210ENST00000540931 PHLDA3Q9Y5J5 127 aa12.47□□□□□ -0.41
CLSTN3-210ENST00000540931 EPPK1P58107 5090 aaKnown RBP12.47□□□□□ -0.41
CLSTN3-210ENST00000540931 A8MWL6 223 aa12.46□□□□□ -0.41
CLSTN3-210ENST00000540931 OR5AL1P0C617 328 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 132.8 ms