RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 VGLL1Q99990 258 aa10.76□□□□□ -0.69
CPSF1-208ENST00000532560 ZNF492Q9P255 531 aa10.76□□□□□ -0.69
CPSF1-208ENST00000532560 YTHDF2Q9Y5A9 579 aaKnown RBP10.76□□□□□ -0.69
CPSF1-208ENST00000532560 TRAV10A0A0B4J240 114 aa10.75□□□□□ -0.69
CPSF1-208ENST00000532560 TRBV7-9A0A0J9YWB2 115 aa10.75□□□□□ -0.69
CPSF1-208ENST00000532560 PAGE4O60829 102 aa10.75□□□□□ -0.69
CPSF1-208ENST00000532560 CXCL1P09341 107 aa10.75□□□□□ -0.69
CPSF1-208ENST00000532560 DNLZQ5SXM8 178 aa10.75□□□□□ -0.69
CPSF1-208ENST00000532560 FAM222AQ5U5X8 452 aa10.75□□□□□ -0.69
CPSF1-208ENST00000532560 KCNIP4Q6PIL6 250 aa10.75□□□□□ -0.69
CPSF1-208ENST00000532560 C16orf74Q96GX8 76 aa10.75□□□□□ -0.69
CPSF1-208ENST00000532560 TGIF2-C20orf24A0A0A6YYL0 155 aa10.74□□□□□ -0.69
CPSF1-208ENST00000532560 PLAC8L1A1L4L8 177 aa10.74□□□□□ -0.69
CPSF1-208ENST00000532560 C7orf71A4D174 169 aa10.74□□□□□ -0.69
CPSF1-208ENST00000532560 PGPA6NDG6 321 aa10.74□□□□□ -0.69
CPSF1-208ENST00000532560 DIRC3C9JPN6 131 aa10.74□□□□□ -0.69
CPSF1-208ENST00000532560 J3KRW8 73 aa10.74□□□□□ -0.69
CPSF1-208ENST00000532560 PRM2P04554 102 aa10.74□□□□□ -0.69
CPSF1-208ENST00000532560 PFN1P07737 140 aaKnown RBP10.74□□□□□ -0.69
CPSF1-208ENST00000532560 ZNF138P52744 262 aa10.74□□□□□ -0.69
CPSF1-208ENST00000532560 ZFAND2AQ8N6M9 145 aa10.74□□□□□ -0.69
CPSF1-208ENST00000532560 CMTM2Q8TAZ6 248 aa10.74□□□□□ -0.69
CPSF1-208ENST00000532560 TMEM263Q8WUH6 116 aaKnown RBP10.74□□□□□ -0.69
CPSF1-208ENST00000532560 TMEM167BQ9NRX6 74 aa10.74□□□□□ -0.69
CPSF1-208ENST00000532560 LY96Q9Y6Y9 160 aa10.74□□□□□ -0.69
CPSF1-208ENST00000532560 TRAV12-3A0A0B4J271 114 aa10.73□□□□□ -0.69
CPSF1-208ENST00000532560 LYRM9A8MSI8 78 aa10.73□□□□□ -0.69
CPSF1-208ENST00000532560 AZU1P20160 251 aa10.73□□□□□ -0.69
CPSF1-208ENST00000532560 S100A2P29034 98 aa10.73□□□□□ -0.69
CPSF1-208ENST00000532560 FAM3BP58499 235 aaPredicted RBP10.73□□□□□ -0.69
CPSF1-208ENST00000532560 ZNF493Q6ZR52 646 aa10.73□□□□□ -0.69
CPSF1-208ENST00000532560 Q8TAT8 98 aa10.73□□□□□ -0.69
CPSF1-208ENST00000532560 RNASE8Q8TDE3 154 aaKnown RBP10.73□□□□□ -0.69
CPSF1-208ENST00000532560 LENEPQ9Y5L5 61 aa10.73□□□□□ -0.69
CPSF1-208ENST00000532560 URGCP-MRPS24S4R325 110 aa10.73□□□□□ -0.69
CPSF1-208ENST00000532560 LYSTQ99698 3801 aa10.72□□□□□ -0.69
CPSF1-208ENST00000532560 TRAV9-1A0A075B6T8 112 aa10.72□□□□□ -0.69
CPSF1-208ENST00000532560 HIST1H2BKO60814 126 aa10.72□□□□□ -0.69
CPSF1-208ENST00000532560 TYMSP04818 313 aa10.72□□□□□ -0.69
CPSF1-208ENST00000532560 HIST1H2BJP06899 126 aa10.72□□□□□ -0.69
CPSF1-208ENST00000532560 HIST1H2BOP23527 126 aa10.72□□□□□ -0.69
CPSF1-208ENST00000532560 HIST1H2BBP33778 126 aa10.72□□□□□ -0.69
CPSF1-208ENST00000532560 HIST1H2BDP58876 126 aa10.72□□□□□ -0.69
CPSF1-208ENST00000532560 HIST1H2BCP62807 126 aa10.72□□□□□ -0.69
CPSF1-208ENST00000532560 HIST2H2BEQ16778 126 aa10.72□□□□□ -0.69
CPSF1-208ENST00000532560 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.72□□□□□ -0.69
CPSF1-208ENST00000532560 C5orf17Q8NAS9 161 aa10.72□□□□□ -0.69
CPSF1-208ENST00000532560 HIST1H2BHQ93079 126 aa10.72□□□□□ -0.69
CPSF1-208ENST00000532560 HIST1H2BNQ99877 126 aa10.72□□□□□ -0.69
CPSF1-208ENST00000532560 HIST1H2BMQ99879 126 aa10.72□□□□□ -0.69
CPSF1-208ENST00000532560 TRGC2P03986 189 aa10.71□□□□□ -0.69
CPSF1-208ENST00000532560 GPX1P07203 203 aa10.71□□□□□ -0.69
CPSF1-208ENST00000532560 HTN1P15515 57 aa10.71□□□□□ -0.69
CPSF1-208ENST00000532560 TCTAP57738 103 aa10.71□□□□□ -0.69
CPSF1-208ENST00000532560 PRR9Q5T870 116 aa10.71□□□□□ -0.69
CPSF1-208ENST00000532560 ALMS1Q8TCU4 4167 aa10.71□□□□□ -0.69
CPSF1-208ENST00000532560 C11orf52Q96A22 123 aa10.71□□□□□ -0.69
CPSF1-208ENST00000532560 LINC00467Q9BRT7 94 aa10.71□□□□□ -0.69
CPSF1-208ENST00000532560 RPH3ALQ9UNE2 315 aa10.71□□□□□ -0.69
CPSF1-208ENST00000532560 DEFB131BA0A096LNP1 70 aa10.7□□□□□ -0.7
CPSF1-208ENST00000532560 SERTM2A0A1B0GWG4 89 aa10.7□□□□□ -0.7
CPSF1-208ENST00000532560 A0A1W2PRE2 83 aa10.7□□□□□ -0.7
CPSF1-208ENST00000532560 C9JCJ5 164 aa10.7□□□□□ -0.7
CPSF1-208ENST00000532560 ZNF324O75467 553 aaPredicted RBP10.7□□□□□ -0.7
CPSF1-208ENST00000532560 RNASE4P34096 147 aaKnown RBP10.7□□□□□ -0.7
CPSF1-208ENST00000532560 NDUFA6P56556 154 aa10.7□□□□□ -0.7
CPSF1-208ENST00000532560 DAD1P61803 113 aa10.7□□□□□ -0.7
CPSF1-208ENST00000532560 GNG5P63218 68 aa10.7□□□□□ -0.7
CPSF1-208ENST00000532560 CST9LP1Q5W188 147 aa10.7□□□□□ -0.7
CPSF1-208ENST00000532560 GOLT1AQ6ZVE7 132 aa10.7□□□□□ -0.7
CPSF1-208ENST00000532560 LINC01551Q86U37 167 aa10.7□□□□□ -0.7
CPSF1-208ENST00000532560 LINC00476Q8WZB0 136 aa10.7□□□□□ -0.7
CPSF1-208ENST00000532560 TIMM8BQ9Y5J9 83 aaPredicted RBP10.7□□□□□ -0.7
CPSF1-208ENST00000532560 GGTLC3B5MD39 225 aa10.69□□□□□ -0.7
CPSF1-208ENST00000532560 PHOX2AO14813 284 aa10.69□□□□□ -0.7
CPSF1-208ENST00000532560 COA6Q5JTJ3 125 aaKnown RBP10.69□□□□□ -0.7
CPSF1-208ENST00000532560 PCP4L1A6NKN8 68 aa10.68□□□□□ -0.7
CPSF1-208ENST00000532560 IGLL5B9A064 214 aa10.68□□□□□ -0.7
CPSF1-208ENST00000532560 TCRAP04437 139 aa10.68□□□□□ -0.7
CPSF1-208ENST00000532560 TRGC1P0CF51 173 aa10.68□□□□□ -0.7
CPSF1-208ENST00000532560 RPL19P84098 196 aaKnown RBP10.68□□□□□ -0.7
CPSF1-208ENST00000532560 IGHV4-4A0A075B6R2 117 aa10.67□□□□□ -0.7
CPSF1-208ENST00000532560 TRAV8-1A0A0A6YYK1 113 aa10.67□□□□□ -0.7
CPSF1-208ENST00000532560 SUMO1P63165 101 aaKnown RBP10.67□□□□□ -0.7
CPSF1-208ENST00000532560 ANXA2RQ3ZCQ2 193 aa10.67□□□□□ -0.7
CPSF1-208ENST00000532560 Q6AWC8 147 aa10.67□□□□□ -0.7
CPSF1-208ENST00000532560 HIST3H2BBQ8N257 126 aa10.67□□□□□ -0.7
CPSF1-208ENST00000532560 FRZBQ92765 325 aa10.67□□□□□ -0.7
CPSF1-208ENST00000532560 APLNQ9ULZ1 77 aa10.67□□□□□ -0.7
CPSF1-208ENST00000532560 SACSQ9NZJ4 4579 aa10.67□□□□□ -0.7
CPSF1-208ENST00000532560 DNAH1Q9P2D7 4330 aa10.66□□□□□ -0.7
CPSF1-208ENST00000532560 PLECQ15149 4684 aaKnown RBP10.66□□□□□ -0.7
CPSF1-208ENST00000532560 K7EQM0 130 aa10.66□□□□□ -0.7
CPSF1-208ENST00000532560 ATP5G3P48201 142 aa10.66□□□□□ -0.7
CPSF1-208ENST00000532560 TMEM183AQ8IXX5 376 aa10.66□□□□□ -0.7
CPSF1-208ENST00000532560 LINC00612Q8N6U2 182 aa10.66□□□□□ -0.7
CPSF1-208ENST00000532560 C11orf72Q8NBR9 251 aa10.66□□□□□ -0.7
CPSF1-208ENST00000532560 SFRP2Q96HF1 295 aa10.66□□□□□ -0.7
CPSF1-208ENST00000532560 ATG101Q9BSB4 218 aa10.66□□□□□ -0.7
CPSF1-208ENST00000532560 NOP10Q9NPE3 64 aaKnown RBP10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms