RNA–Protein interactions for RNA: ENST00000416538.5

UBXN4-203, Transcript of UBX domain protein 4, humanhuman

TSL 5

Gene UBXN4, Length 1,255 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-203ENST00000416538 STAG3L2P0CL84 134 aa10.32□□□□□ -0.76
UBXN4-203ENST00000416538 STAG3L3P0CL85 134 aa10.32□□□□□ -0.76
UBXN4-203ENST00000416538 CMTM2Q8TAZ6 248 aa10.32□□□□□ -0.76
UBXN4-203ENST00000416538 C11orf21Q9P2W6 132 aa10.32□□□□□ -0.76
UBXN4-203ENST00000416538 TRGV11A0A075B6L2 103 aa10.31□□□□□ -0.76
UBXN4-203ENST00000416538 RNF222A6NCQ9 220 aa10.31□□□□□ -0.76
UBXN4-203ENST00000416538 GGTLC3B5MD39 225 aa10.31□□□□□ -0.76
UBXN4-203ENST00000416538 G3V3Q6 166 aa10.31□□□□□ -0.76
UBXN4-203ENST00000416538 ZNF80P51504 273 aaPredicted RBP10.31□□□□□ -0.76
UBXN4-203ENST00000416538 FAM159AQ6UWV7 190 aa10.31□□□□□ -0.76
UBXN4-203ENST00000416538 SPATA12Q7Z6I5 190 aa10.31□□□□□ -0.76
UBXN4-203ENST00000416538 SUN5Q8TC36 379 aa10.31□□□□□ -0.76
UBXN4-203ENST00000416538 RASL10AQ92737 203 aa10.31□□□□□ -0.76
UBXN4-203ENST00000416538 RAB24Q969Q5 203 aa10.31□□□□□ -0.76
UBXN4-203ENST00000416538 PSMG3Q9BT73 122 aaPredicted RBP10.31□□□□□ -0.76
UBXN4-203ENST00000416538 HHLA3Q9XRX5 114 aa10.31□□□□□ -0.76
UBXN4-203ENST00000416538 SIVA1O15304 175 aa10.3□□□□□ -0.76
UBXN4-203ENST00000416538 IGLV2-11P01706 119 aa10.3□□□□□ -0.76
UBXN4-203ENST00000416538 GCHFRP30047 84 aa10.3□□□□□ -0.76
UBXN4-203ENST00000416538 TREM1Q9NP99 234 aa10.3□□□□□ -0.76
UBXN4-203ENST00000416538 TNFRSF18Q9Y5U5 241 aa10.3□□□□□ -0.76
UBXN4-203ENST00000416538 LOC100131303A0A0U1RQF7 123 aa10.29□□□□□ -0.76
UBXN4-203ENST00000416538 K7EQD1 137 aa10.29□□□□□ -0.76
UBXN4-203ENST00000416538 TCRAP04437 139 aa10.29□□□□□ -0.76
UBXN4-203ENST00000416538 ZNF726P1Q15940 193 aa10.29□□□□□ -0.76
UBXN4-203ENST00000416538 LYPD5Q6UWN5 251 aa10.29□□□□□ -0.76
UBXN4-203ENST00000416538 ARL6IP6Q8N6S5 226 aa10.29□□□□□ -0.76
UBXN4-203ENST00000416538 TMEM75Q8N9X5 138 aa10.29□□□□□ -0.76
UBXN4-203ENST00000416538 SPXQ9BT56 116 aa10.29□□□□□ -0.76
UBXN4-203ENST00000416538 TRAV21A0A0B4J279 112 aa10.28□□□□□ -0.76
UBXN4-203ENST00000416538 TRGV4A0A0C4DH28 118 aa10.28□□□□□ -0.76
UBXN4-203ENST00000416538 GIPP09681 153 aaPredicted RBP10.28□□□□□ -0.76
UBXN4-203ENST00000416538 GYPEP15421 78 aa10.28□□□□□ -0.76
UBXN4-203ENST00000416538 MRPL23Q16540 153 aaKnown RBP10.28□□□□□ -0.76
UBXN4-203ENST00000416538 FAM74A1Q5RGS3 127 aa10.28□□□□□ -0.76
UBXN4-203ENST00000416538 RPL7L1Q6DKI1 246 aaKnown RBP10.28□□□□□ -0.76
UBXN4-203ENST00000416538 WFDC10BQ8IUB3 73 aa10.28□□□□□ -0.76
UBXN4-203ENST00000416538 IQCF2Q8IXL9 164 aa10.28□□□□□ -0.76
UBXN4-203ENST00000416538 C5orf17Q8NAS9 161 aa10.28□□□□□ -0.76
UBXN4-203ENST00000416538 TRAV4A0A0B4J268 109 aa10.27□□□□□ -0.77
UBXN4-203ENST00000416538 CDK2AP2O75956 126 aa10.27□□□□□ -0.77
UBXN4-203ENST00000416538 BTF3P20290 206 aaKnown RBP10.27□□□□□ -0.77
UBXN4-203ENST00000416538 FUSP35637 526 aaKnown RBP eCLIP10.27□□□□□ -0.77
UBXN4-203ENST00000416538 ASB13Q8WXK3 278 aa10.27□□□□□ -0.77
UBXN4-203ENST00000416538 M0R2P5 195 aa10.26□□□□□ -0.77
UBXN4-203ENST00000416538 SLAQ13239 276 aa10.26□□□□□ -0.77
UBXN4-203ENST00000416538 DPPA3Q6W0C5 159 aa10.26□□□□□ -0.77
UBXN4-203ENST00000416538 NEGR1Q7Z3B1 354 aa10.26□□□□□ -0.77
UBXN4-203ENST00000416538 TNFSF18Q9UNG2 199 aa10.26□□□□□ -0.77
UBXN4-203ENST00000416538 FXYD6-FXYD2A0A087WZ82 144 aa10.25□□□□□ -0.77
UBXN4-203ENST00000416538 SRIP30626 198 aa10.25□□□□□ -0.77
UBXN4-203ENST00000416538 SERF2P84101 59 aa10.25□□□□□ -0.77
UBXN4-203ENST00000416538 RGS21Q2M5E4 152 aa10.25□□□□□ -0.77
UBXN4-203ENST00000416538 SDF2L1Q9HCN8 221 aa10.25□□□□□ -0.77
UBXN4-203ENST00000416538 PSG8Q9UQ74 426 aa10.25□□□□□ -0.77
UBXN4-203ENST00000416538 GCGP01275 180 aa10.24□□□□□ -0.77
UBXN4-203ENST00000416538 DNAH10OSP0CZ25 163 aa10.24□□□□□ -0.77
UBXN4-203ENST00000416538 GATA1P15976 413 aaPredicted RBP10.24□□□□□ -0.77
UBXN4-203ENST00000416538 SUMO1P63165 101 aaKnown RBP10.24□□□□□ -0.77
UBXN4-203ENST00000416538 INO80EQ8NBZ0 244 aaPredicted RBP10.24□□□□□ -0.77
UBXN4-203ENST00000416538 OR4C5Q8NGB2 326 aa10.24□□□□□ -0.77
UBXN4-203ENST00000416538 C9orf85Q96MD7 179 aa10.24□□□□□ -0.77
UBXN4-203ENST00000416538 TRAV34A0A0B4J273 112 aa10.23□□□□□ -0.77
UBXN4-203ENST00000416538 SERTM2A0A1B0GWG4 89 aa10.23□□□□□ -0.77
UBXN4-203ENST00000416538 CXorf1O96002 111 aa10.23□□□□□ -0.77
UBXN4-203ENST00000416538 RNASE3P12724 160 aaKnown RBP10.23□□□□□ -0.77
UBXN4-203ENST00000416538 FLI1Q01543 452 aaPredicted RBP10.23□□□□□ -0.77
UBXN4-203ENST00000416538 PRNTQ86SH4 94 aa10.23□□□□□ -0.77
UBXN4-203ENST00000416538 CYB561D1Q8N8Q1 229 aa10.23□□□□□ -0.77
UBXN4-203ENST00000416538 OR2T35Q8NGX2 323 aa10.23□□□□□ -0.77
UBXN4-203ENST00000416538 LINC00479Q96M42 142 aa10.23□□□□□ -0.77
UBXN4-203ENST00000416538 ACTR3CQ9C0K3 210 aaPredicted RBP10.23□□□□□ -0.77
UBXN4-203ENST00000416538 EPDR1Q9UM22 224 aa10.23□□□□□ -0.77
UBXN4-203ENST00000416538 MBP02144 154 aa10.22□□□□□ -0.77
UBXN4-203ENST00000416538 PFN1P07737 140 aaKnown RBP10.22□□□□□ -0.77
UBXN4-203ENST00000416538 FGF8P55075 233 aaPredicted RBP10.22□□□□□ -0.77
UBXN4-203ENST00000416538 PCNPQ8WW12 178 aaKnown RBP10.22□□□□□ -0.77
UBXN4-203ENST00000416538 KCNS1Q96KK3 526 aa10.22□□□□□ -0.77
UBXN4-203ENST00000416538 NDFIP1Q9BT67 221 aa10.22□□□□□ -0.77
UBXN4-203ENST00000416538 TMEM167BQ9NRX6 74 aa10.22□□□□□ -0.77
UBXN4-203ENST00000416538 PGPEP1LA6NFU8 196 aa10.21□□□□□ -0.77
UBXN4-203ENST00000416538 C9JCJ5 164 aa10.21□□□□□ -0.77
UBXN4-203ENST00000416538 RS1O15537 224 aa10.21□□□□□ -0.77
UBXN4-203ENST00000416538 ORM1P02763 201 aa10.21□□□□□ -0.77
UBXN4-203ENST00000416538 UBE2G2P60604 165 aa10.21□□□□□ -0.77
UBXN4-203ENST00000416538 ZNF506Q5JVG8 444 aa10.21□□□□□ -0.77
UBXN4-203ENST00000416538 CFAP126Q5VTH2 177 aa10.21□□□□□ -0.77
UBXN4-203ENST00000416538 MAPKAPK5-AS1Q8N8E1 139 aa10.21□□□□□ -0.77
UBXN4-203ENST00000416538 CYTL1Q9NRR1 136 aa10.21□□□□□ -0.77
UBXN4-203ENST00000416538 LY96Q9Y6Y9 160 aa10.21□□□□□ -0.77
UBXN4-203ENST00000416538 BORCS7-ASMTA0A0B4J1R7 106 aa10.2□□□□□ -0.78
UBXN4-203ENST00000416538 IGHV3-73A0A0B4J1V6 119 aa10.2□□□□□ -0.78
UBXN4-203ENST00000416538 IGKV3D-20A0A0C4DH25 116 aa10.2□□□□□ -0.78
UBXN4-203ENST00000416538 CTXND1A0A1B0GTU2 59 aa10.2□□□□□ -0.78
UBXN4-203ENST00000416538 A0A1W2PRE2 83 aa10.2□□□□□ -0.78
UBXN4-203ENST00000416538 SMLR1H3BR10 107 aa10.2□□□□□ -0.78
UBXN4-203ENST00000416538 ZNF876PQ49A33 203 aa10.2□□□□□ -0.78
UBXN4-203ENST00000416538 SMUG1Q53HV7 270 aa10.2□□□□□ -0.78
UBXN4-203ENST00000416538 Q86TA4 180 aa10.2□□□□□ -0.78
UBXN4-203ENST00000416538 SLC25A29Q8N8R3 303 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms