RNA–Protein interactions for RNA: ENST00000407422.7

SMARCB1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,643 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-204ENST00000407422 TRAV21A0A0B4J279 112 aa13.22□□□□□ -0.29
SMARCB1-204ENST00000407422 TRGV4A0A0C4DH28 118 aa13.22□□□□□ -0.29
SMARCB1-204ENST00000407422 IGHV3-16A0A0C4DH30 117 aa13.22□□□□□ -0.29
SMARCB1-204ENST00000407422 SERF2P84101 59 aa13.22□□□□□ -0.29
SMARCB1-204ENST00000407422 RNF222A6NCQ9 220 aa13.21□□□□□ -0.29
SMARCB1-204ENST00000407422 C16orf90A8MZG2 172 aa13.21□□□□□ -0.29
SMARCB1-204ENST00000407422 TCRAP04437 139 aa13.21□□□□□ -0.29
SMARCB1-204ENST00000407422 TYMSP04818 313 aa13.21□□□□□ -0.29
SMARCB1-204ENST00000407422 RPL7L1Q6DKI1 246 aaKnown RBP13.21□□□□□ -0.29
SMARCB1-204ENST00000407422 FXYD6-FXYD2A0A087WZ82 144 aa13.21□□□□□ -0.3
SMARCB1-204ENST00000407422 SIVA1O15304 175 aa13.21□□□□□ -0.3
SMARCB1-204ENST00000407422 NXPH4O95158 308 aa13.21□□□□□ -0.3
SMARCB1-204ENST00000407422 MBP02144 154 aa13.21□□□□□ -0.3
SMARCB1-204ENST00000407422 MRPL23Q16540 153 aaKnown RBP13.21□□□□□ -0.3
SMARCB1-204ENST00000407422 LYPD5Q6UWN5 251 aa13.21□□□□□ -0.3
SMARCB1-204ENST00000407422 C5orf17Q8NAS9 161 aa13.21□□□□□ -0.3
SMARCB1-204ENST00000407422 INO80EQ8NBZ0 244 aaPredicted RBP13.21□□□□□ -0.3
SMARCB1-204ENST00000407422 LOC105371267A0A1B0GV96 52 aa13.2□□□□□ -0.3
SMARCB1-204ENST00000407422 GGTLC3B5MD39 225 aa13.2□□□□□ -0.3
SMARCB1-204ENST00000407422 ZNF80P51504 273 aaPredicted RBP13.2□□□□□ -0.3
SMARCB1-204ENST00000407422 ASB13Q8WXK3 278 aa13.2□□□□□ -0.3
SMARCB1-204ENST00000407422 TNFSF18Q9UNG2 199 aa13.2□□□□□ -0.3
SMARCB1-204ENST00000407422 ABCA13Q86UQ4 5058 aa13.2□□□□□ -0.3
SMARCB1-204ENST00000407422 APOBP04114 4563 aaKnown RBP13.19□□□□□ -0.3
SMARCB1-204ENST00000407422 K7EQD1 137 aa13.19□□□□□ -0.3
SMARCB1-204ENST00000407422 M0R2P5 195 aa13.19□□□□□ -0.3
SMARCB1-204ENST00000407422 IGLV2-11P01706 119 aa13.19□□□□□ -0.3
SMARCB1-204ENST00000407422 LINC00315P59091 139 aa13.19□□□□□ -0.3
SMARCB1-204ENST00000407422 SUMO1P63165 101 aaKnown RBP13.19□□□□□ -0.3
SMARCB1-204ENST00000407422 ACTR3CQ9C0K3 210 aaPredicted RBP13.19□□□□□ -0.3
SMARCB1-204ENST00000407422 SDF2L1Q9HCN8 221 aa13.19□□□□□ -0.3
SMARCB1-204ENST00000407422 C11orf21Q9P2W6 132 aa13.19□□□□□ -0.3
SMARCB1-204ENST00000407422 SERTM2A0A1B0GWG4 89 aa13.18□□□□□ -0.3
SMARCB1-204ENST00000407422 CXorf1O96002 111 aa13.18□□□□□ -0.3
SMARCB1-204ENST00000407422 NEGR1Q7Z3B1 354 aa13.18□□□□□ -0.3
SMARCB1-204ENST00000407422 SPATA12Q7Z6I5 190 aa13.18□□□□□ -0.3
SMARCB1-204ENST00000407422 OR2T35Q8NGX2 323 aa13.18□□□□□ -0.3
SMARCB1-204ENST00000407422 PSG8Q9UQ74 426 aa13.18□□□□□ -0.3
SMARCB1-204ENST00000407422 TRAV4A0A0B4J268 109 aa13.17□□□□□ -0.3
SMARCB1-204ENST00000407422 GYPEP15421 78 aa13.17□□□□□ -0.3
SMARCB1-204ENST00000407422 OR4C5Q8NGB2 326 aa13.17□□□□□ -0.3
SMARCB1-204ENST00000407422 NDFIP1Q9BT67 221 aa13.17□□□□□ -0.3
SMARCB1-204ENST00000407422 TMEM167BQ9NRX6 74 aa13.17□□□□□ -0.3
SMARCB1-204ENST00000407422 EPDR1Q9UM22 224 aa13.17□□□□□ -0.3
SMARCB1-204ENST00000407422 G3V3Q6 166 aa13.17□□□□□ -0.3
SMARCB1-204ENST00000407422 IFITM2Q01629 132 aa13.17□□□□□ -0.3
SMARCB1-204ENST00000407422 ZNF726P1Q15940 193 aa13.17□□□□□ -0.3
SMARCB1-204ENST00000407422 KCNS1Q96KK3 526 aa13.17□□□□□ -0.3
SMARCB1-204ENST00000407422 K7EQM0 130 aa13.16□□□□□ -0.3
SMARCB1-204ENST00000407422 GCGP01275 180 aa13.16□□□□□ -0.3
SMARCB1-204ENST00000407422 BTF3P20290 206 aaKnown RBP13.16□□□□□ -0.3
SMARCB1-204ENST00000407422 SRIP30626 198 aa13.16□□□□□ -0.3
SMARCB1-204ENST00000407422 Q6ZRN7 208 aaPredicted RBP13.16□□□□□ -0.3
SMARCB1-204ENST00000407422 PRNTQ86SH4 94 aa13.16□□□□□ -0.3
SMARCB1-204ENST00000407422 TMEM75Q8N9X5 138 aa13.16□□□□□ -0.3
SMARCB1-204ENST00000407422 TNFRSF18Q9Y5U5 241 aa13.16□□□□□ -0.3
SMARCB1-204ENST00000407422 BORCS7-ASMTA0A0B4J1R7 106 aa13.15□□□□□ -0.3
SMARCB1-204ENST00000407422 FLI1Q01543 452 aaPredicted RBP13.15□□□□□ -0.3
SMARCB1-204ENST00000407422 CYB561D1Q8N8Q1 229 aa13.15□□□□□ -0.3
SMARCB1-204ENST00000407422 PCNPQ8WW12 178 aaKnown RBP13.15□□□□□ -0.3
SMARCB1-204ENST00000407422 LINC00479Q96M42 142 aa13.15□□□□□ -0.3
SMARCB1-204ENST00000407422 LOC100131303A0A0U1RQF7 123 aa13.14□□□□□ -0.31
SMARCB1-204ENST00000407422 KRTAP10-2P60368 255 aa13.14□□□□□ -0.31
SMARCB1-204ENST00000407422 C9JCJ5 164 aa13.13□□□□□ -0.31
SMARCB1-204ENST00000407422 ORM1P02763 201 aa13.13□□□□□ -0.31
SMARCB1-204ENST00000407422 PFN1P07737 140 aaKnown RBP13.13□□□□□ -0.31
SMARCB1-204ENST00000407422 WFDC10BQ8IUB3 73 aa13.13□□□□□ -0.31
SMARCB1-204ENST00000407422 KRTAP4-5Q9BYR2 181 aa13.13□□□□□ -0.31
SMARCB1-204ENST00000407422 TRAV34A0A0B4J273 112 aa13.13□□□□□ -0.31
SMARCB1-204ENST00000407422 A0A1W2PRE2 83 aa13.13□□□□□ -0.31
SMARCB1-204ENST00000407422 TAAR5O14804 337 aa13.13□□□□□ -0.31
SMARCB1-204ENST00000407422 CTAG1AP78358 180 aa13.13□□□□□ -0.31
SMARCB1-204ENST00000407422 ZNF876PQ49A33 203 aa13.13□□□□□ -0.31
SMARCB1-204ENST00000407422 CTXND1A0A1B0GTU2 59 aa13.12□□□□□ -0.31
SMARCB1-204ENST00000407422 GATA1P15976 413 aaPredicted RBP13.12□□□□□ -0.31
SMARCB1-204ENST00000407422 FGF8P55075 233 aaPredicted RBP13.12□□□□□ -0.31
SMARCB1-204ENST00000407422 UBE2G2P60604 165 aa13.12□□□□□ -0.31
SMARCB1-204ENST00000407422 DPPA3Q6W0C5 159 aa13.12□□□□□ -0.31
SMARCB1-204ENST00000407422 AKAP14Q86UN6 197 aa13.12□□□□□ -0.31
SMARCB1-204ENST00000407422 ARPC5O15511 151 aa13.11□□□□□ -0.31
SMARCB1-204ENST00000407422 ZFP69Q49AA0 526 aa13.11□□□□□ -0.31
SMARCB1-204ENST00000407422 TXNDC17Q9BRA2 123 aa13.11□□□□□ -0.31
SMARCB1-204ENST00000407422 CDK2AP2O75956 126 aa13.1□□□□□ -0.31
SMARCB1-204ENST00000407422 C9orf85Q96MD7 179 aa13.1□□□□□ -0.31
SMARCB1-204ENST00000407422 CYTL1Q9NRR1 136 aa13.1□□□□□ -0.31
SMARCB1-204ENST00000407422 LY96Q9Y6Y9 160 aa13.1□□□□□ -0.31
SMARCB1-204ENST00000407422 SMLR1H3BR10 107 aa13.1□□□□□ -0.31
SMARCB1-204ENST00000407422 IFNA7P01567 189 aa13.1□□□□□ -0.31
SMARCB1-204ENST00000407422 RNASE3P12724 160 aaKnown RBP13.1□□□□□ -0.31
SMARCB1-204ENST00000407422 SAPCD1Q5SSQ6 148 aa13.1□□□□□ -0.31
SMARCB1-204ENST00000407422 AKR1C8PQ5T2L2 129 aa13.1□□□□□ -0.31
SMARCB1-204ENST00000407422 CFAP126Q5VTH2 177 aa13.1□□□□□ -0.31
SMARCB1-204ENST00000407422 SLC51BQ86UW2 128 aa13.1□□□□□ -0.31
SMARCB1-204ENST00000407422 IGHV3-73A0A0B4J1V6 119 aa13.09□□□□□ -0.31
SMARCB1-204ENST00000407422 PGPEP1LA6NFU8 196 aa13.09□□□□□ -0.31
SMARCB1-204ENST00000407422 FBLL1A6NHQ2 334 aaKnown RBP13.09□□□□□ -0.31
SMARCB1-204ENST00000407422 SLC25A29Q8N8R3 303 aa13.09□□□□□ -0.31
SMARCB1-204ENST00000407422 NHLRC2Q8NBF2 726 aa13.09□□□□□ -0.31
SMARCB1-204ENST00000407422 ARL2-SNX15V9GYD0 113 aa13.09□□□□□ -0.31
SMARCB1-204ENST00000407422 FAM74A7A6NL05 159 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms