RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 LGALS1P09382 135 aaKnown RBP10.4□□□□□ -0.75
CCDC88C-201ENST00000331194 IL17RELQ6ZVW7 336 aa10.4□□□□□ -0.75
CCDC88C-201ENST00000331194 KLHL30-AS1Q8NEE0 82 aa10.4□□□□□ -0.75
CCDC88C-201ENST00000331194 ACACBO00763 2458 aa10.39□□□□□ -0.75
CCDC88C-201ENST00000331194 LAGE3Q14657 143 aa10.39□□□□□ -0.75
CCDC88C-201ENST00000331194 IGHV3OR16-13A0A075B7E8 117 aa10.39□□□□□ -0.75
CCDC88C-201ENST00000331194 IGHV3-74A0A0B4J1X5 117 aa10.39□□□□□ -0.75
CCDC88C-201ENST00000331194 IGHV3-66A0A0C4DH42 116 aa10.39□□□□□ -0.75
CCDC88C-201ENST00000331194 LYNX1G3V0Z9 82 aa10.39□□□□□ -0.75
CCDC88C-201ENST00000331194 CCDC179H3BU77 68 aa10.39□□□□□ -0.75
CCDC88C-201ENST00000331194 H3BVH4 76 aa10.39□□□□□ -0.75
CCDC88C-201ENST00000331194 LYNX1P0DP58 116 aa10.39□□□□□ -0.75
CCDC88C-201ENST00000331194 ADIPOQQ15848 244 aa10.39□□□□□ -0.75
CCDC88C-201ENST00000331194 TAL2Q16559 108 aa10.39□□□□□ -0.75
CCDC88C-201ENST00000331194 VKORC1Q9BQB6 163 aa10.39□□□□□ -0.75
CCDC88C-201ENST00000331194 TNFRSF18Q9Y5U5 241 aa10.39□□□□□ -0.75
CCDC88C-201ENST00000331194 IGKV3D-20A0A0C4DH25 116 aa10.38□□□□□ -0.75
CCDC88C-201ENST00000331194 THBDP07204 575 aa10.38□□□□□ -0.75
CCDC88C-201ENST00000331194 ZFAND6Q6FIF0 208 aa10.38□□□□□ -0.75
CCDC88C-201ENST00000331194 FAM215AQ9Y5M1 114 aa10.38□□□□□ -0.75
CCDC88C-201ENST00000331194 CENPEQ02224 2701 aa10.38□□□□□ -0.75
CCDC88C-201ENST00000331194 TEX29Q8N6K0 151 aa10.38□□□□□ -0.75
CCDC88C-201ENST00000331194 NRACQ8N912 160 aa10.38□□□□□ -0.75
CCDC88C-201ENST00000331194 DLX4Q92988 240 aaPredicted RBP10.38□□□□□ -0.75
CCDC88C-201ENST00000331194 FABP5P3A8MUU1 101 aa10.38□□□□□ -0.75
CCDC88C-201ENST00000331194 BUB1B-PAK6H3BSN5 160 aa10.38□□□□□ -0.75
CCDC88C-201ENST00000331194 CACNA1AO00555 2505 aa10.38□□□□□ -0.75
CCDC88C-201ENST00000331194 EMP1P54849 157 aa10.37□□□□□ -0.75
CCDC88C-201ENST00000331194 TMEM78Q5T7P6 136 aa10.37□□□□□ -0.75
CCDC88C-201ENST00000331194 MBD3L4A6NDZ8 208 aaPredicted RBP10.37□□□□□ -0.75
CCDC88C-201ENST00000331194 MBD3L3A6NE82 208 aaPredicted RBP10.37□□□□□ -0.75
CCDC88C-201ENST00000331194 MBD3L5A6NJ08 208 aaPredicted RBP10.37□□□□□ -0.75
CCDC88C-201ENST00000331194 IGLV1-47P01700 117 aa10.37□□□□□ -0.75
CCDC88C-201ENST00000331194 PDE6HQ13956 83 aa10.37□□□□□ -0.75
CCDC88C-201ENST00000331194 MBD3L2Q8NHZ7 208 aaPredicted RBP10.37□□□□□ -0.75
CCDC88C-201ENST00000331194 F8W735 103 aaPredicted RBP10.36□□□□□ -0.75
CCDC88C-201ENST00000331194 NHLRC4P0CG21 123 aaPredicted RBP10.36□□□□□ -0.75
CCDC88C-201ENST00000331194 SRSF9Q13242 221 aaKnown RBP eCLIP10.36□□□□□ -0.75
CCDC88C-201ENST00000331194 C3orf36Q3SXR2 165 aa10.36□□□□□ -0.75
CCDC88C-201ENST00000331194 J3KRW8 73 aa10.36□□□□□ -0.75
CCDC88C-201ENST00000331194 SCGB1D4Q6XE38 83 aa10.36□□□□□ -0.75
CCDC88C-201ENST00000331194 CNFNQ9BYD5 112 aa10.36□□□□□ -0.75
CCDC88C-201ENST00000331194 TIMM23O14925 209 aa10.36□□□□□ -0.75
CCDC88C-201ENST00000331194 SLC25A16P16260 332 aa10.36□□□□□ -0.75
CCDC88C-201ENST00000331194 PRTN3P24158 256 aa10.36□□□□□ -0.75
CCDC88C-201ENST00000331194 PSMG4Q5JS54 123 aa10.36□□□□□ -0.75
CCDC88C-201ENST00000331194 C8orf31Q8N9H6 132 aa10.36□□□□□ -0.75
CCDC88C-201ENST00000331194 PRADC1Q9BSG0 188 aa10.36□□□□□ -0.75
CCDC88C-201ENST00000331194 ONECUT1Q9UBC0 465 aa10.36□□□□□ -0.75
CCDC88C-201ENST00000331194 RAXQ9Y2V3 346 aa10.36□□□□□ -0.75
CCDC88C-201ENST00000331194 ZNF815PA8K554 130 aa10.35□□□□□ -0.75
CCDC88C-201ENST00000331194 F8VRH5 84 aa10.35□□□□□ -0.75
CCDC88C-201ENST00000331194 TCL1BO95988 128 aa10.35□□□□□ -0.75
CCDC88C-201ENST00000331194 FANCD2OSQ96PS1 177 aa10.35□□□□□ -0.75
CCDC88C-201ENST00000331194 YAE1D1Q9NRH1 226 aa10.35□□□□□ -0.75
CCDC88C-201ENST00000331194 TRAV17A0A0B4J275 112 aa10.35□□□□□ -0.75
CCDC88C-201ENST00000331194 H7C1H1 209 aa10.35□□□□□ -0.75
CCDC88C-201ENST00000331194 PLNP26678 52 aa10.35□□□□□ -0.75
CCDC88C-201ENST00000331194 ATP5J2P56134 94 aa10.35□□□□□ -0.75
CCDC88C-201ENST00000331194 IGHV3-49A0A0A0MS15 119 aa10.34□□□□□ -0.75
CCDC88C-201ENST00000331194 CRYBG3Q68DQ2 2970 aa10.34□□□□□ -0.75
CCDC88C-201ENST00000331194 COX8CQ7Z4L0 72 aa10.34□□□□□ -0.75
CCDC88C-201ENST00000331194 SCGB3A1Q96QR1 104 aa10.34□□□□□ -0.75
CCDC88C-201ENST00000331194 VPS13CQ709C8 3753 aa10.34□□□□□ -0.75
CCDC88C-201ENST00000331194 GAGE12JA6NER3 117 aa10.34□□□□□ -0.75
CCDC88C-201ENST00000331194 GAGE7O76087 117 aa10.34□□□□□ -0.75
CCDC88C-201ENST00000331194 GAGE12FP0CL80 117 aa10.34□□□□□ -0.75
CCDC88C-201ENST00000331194 GAGE12GP0CL81 117 aa10.34□□□□□ -0.75
CCDC88C-201ENST00000331194 GAGE12IP0CL82 117 aa10.34□□□□□ -0.75
CCDC88C-201ENST00000331194 BSPH1Q075Z2 132 aa10.34□□□□□ -0.75
CCDC88C-201ENST00000331194 GAGE4Q13068 117 aa10.34□□□□□ -0.75
CCDC88C-201ENST00000331194 PKD1L2Q7Z442 2459 aa10.34□□□□□ -0.75
CCDC88C-201ENST00000331194 NBL1P41271 181 aa10.33□□□□□ -0.76
CCDC88C-201ENST00000331194 C3orf56Q8N813 242 aa10.33□□□□□ -0.76
CCDC88C-201ENST00000331194 RPL7P18124 248 aaKnown RBP10.33□□□□□ -0.76
CCDC88C-201ENST00000331194 UTP20O75691 2785 aaKnown RBP10.33□□□□□ -0.76
CCDC88C-201ENST00000331194 PRR30Q53SZ7 412 aaPredicted RBP10.33□□□□□ -0.76
CCDC88C-201ENST00000331194 MFAP4P55083 255 aa10.32□□□□□ -0.76
CCDC88C-201ENST00000331194 HES1Q14469 280 aa10.32□□□□□ -0.76
CCDC88C-201ENST00000331194 PPDPFLQ8WWR9 84 aa10.32□□□□□ -0.76
CCDC88C-201ENST00000331194 RPL39LQ96EH5 51 aaKnown RBP10.32□□□□□ -0.76
CCDC88C-201ENST00000331194 SPANXN1Q5VSR9 72 aa10.32□□□□□ -0.76
CCDC88C-201ENST00000331194 TEN1Q86WV5 123 aa10.32□□□□□ -0.76
CCDC88C-201ENST00000331194 ANKRD29Q8N6D5 301 aa10.32□□□□□ -0.76
CCDC88C-201ENST00000331194 ATP6V0E2Q8NHE4 81 aa10.32□□□□□ -0.76
CCDC88C-201ENST00000331194 IGHV7-4-1A0A0J9YVY3 117 aa10.31□□□□□ -0.76
CCDC88C-201ENST00000331194 CRIP2P52943 208 aaPredicted RBP10.31□□□□□ -0.76
CCDC88C-201ENST00000331194 NDPQ00604 133 aa10.31□□□□□ -0.76
CCDC88C-201ENST00000331194 LINC01559Q495D7 138 aa10.31□□□□□ -0.76
CCDC88C-201ENST00000331194 RASL10AQ92737 203 aa10.31□□□□□ -0.76
CCDC88C-201ENST00000331194 AJUBAQ96IF1 538 aa10.31□□□□□ -0.76
CCDC88C-201ENST00000331194 AGPAT4-IT1Q9H0P7 198 aa10.31□□□□□ -0.76
CCDC88C-201ENST00000331194 PPDPFQ9H3Y8 114 aa10.31□□□□□ -0.76
CCDC88C-201ENST00000331194 UBE2D1P51668 147 aa10.31□□□□□ -0.76
CCDC88C-201ENST00000331194 Q6ZS46 218 aa10.31□□□□□ -0.76
CCDC88C-201ENST00000331194 C21orf62Q9NYP8 219 aa10.31□□□□□ -0.76
CCDC88C-201ENST00000331194 SPG11Q96JI7 2443 aa10.31□□□□□ -0.76
CCDC88C-201ENST00000331194 CFAP46Q8IYW2 2715 aa10.31□□□□□ -0.76
CCDC88C-201ENST00000331194 CSMD2Q7Z408 3487 aa10.3□□□□□ -0.76
CCDC88C-201ENST00000331194 M0QXV9 152 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms