RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 IGKV3-20P01619 116 aa7.2□□□□□ -1.26
CLN3-261ENST00000637686 GIG44P09565 113 aaPredicted RBP7.2□□□□□ -1.26
CLN3-261ENST00000637686 CRISP2P16562 243 aa7.2□□□□□ -1.26
CLN3-261ENST00000637686 ZNF138P52744 262 aa7.2□□□□□ -1.26
CLN3-261ENST00000637686 CENPWQ5EE01 88 aa7.2□□□□□ -1.26
CLN3-261ENST00000637686 TMEM78Q5T7P6 136 aa7.2□□□□□ -1.26
CLN3-261ENST00000637686 EBLN2Q6P2I7 272 aa7.2□□□□□ -1.26
CLN3-261ENST00000637686 MORN3Q6PF18 240 aaPredicted RBP7.2□□□□□ -1.26
CLN3-261ENST00000637686 BAGE2Q86Y30 109 aa7.2□□□□□ -1.26
CLN3-261ENST00000637686 TMEM183AQ8IXX5 376 aa7.2□□□□□ -1.26
CLN3-261ENST00000637686 SVBPQ8N300 66 aa7.2□□□□□ -1.26
CLN3-261ENST00000637686 FAM19A4Q96LR4 140 aa7.2□□□□□ -1.26
CLN3-261ENST00000637686 DERL1Q9BUN8 251 aa7.2□□□□□ -1.26
CLN3-261ENST00000637686 ZNF492Q9P255 531 aa7.2□□□□□ -1.26
CLN3-261ENST00000637686 TRBV20OR9-2A0A075B6H5 130 aa7.19□□□□□ -1.26
CLN3-261ENST00000637686 IGKV2-40A0A087WW87 121 aaPredicted RBP7.19□□□□□ -1.26
CLN3-261ENST00000637686 PRAC2D3DTV9 90 aa7.19□□□□□ -1.26
CLN3-261ENST00000637686 SNAPINO95295 136 aa7.19□□□□□ -1.26
CLN3-261ENST00000637686 IGKV2D-40P01614 121 aaPredicted RBP7.19□□□□□ -1.26
CLN3-261ENST00000637686 CEBPGP53567 150 aa7.19□□□□□ -1.26
CLN3-261ENST00000637686 LINC01551Q86U37 167 aa7.19□□□□□ -1.26
CLN3-261ENST00000637686 OR4B1Q8NGF8 309 aa7.19□□□□□ -1.26
CLN3-261ENST00000637686 MUC7Q8TAX7 377 aa7.19□□□□□ -1.26
CLN3-261ENST00000637686 AGPAT4-IT1Q9H0P7 198 aa7.19□□□□□ -1.26
CLN3-261ENST00000637686 RPH3ALQ9UNE2 315 aa7.19□□□□□ -1.26
CLN3-261ENST00000637686 STAB2Q8WWQ8 2551 aa7.18□□□□□ -1.26
CLN3-261ENST00000637686 TRAV8-1A0A0A6YYK1 113 aa7.18□□□□□ -1.26
CLN3-261ENST00000637686 TRAV34A0A0B4J273 112 aa7.18□□□□□ -1.26
CLN3-261ENST00000637686 A0A0J9YWU9 116 aa7.18□□□□□ -1.26
CLN3-261ENST00000637686 GCGP01275 180 aa7.18□□□□□ -1.26
CLN3-261ENST00000637686 IGLV2-8P01709 118 aa7.18□□□□□ -1.26
CLN3-261ENST00000637686 FXYD7P58549 80 aa7.18□□□□□ -1.26
CLN3-261ENST00000637686 RPL23P62829 140 aaKnown RBP7.18□□□□□ -1.26
CLN3-261ENST00000637686 HIST1H1AQ02539 215 aaPredicted RBP7.18□□□□□ -1.26
CLN3-261ENST00000637686 ZNF674Q2M3X9 581 aa7.18□□□□□ -1.26
CLN3-261ENST00000637686 FAM231DQ6ZW35 169 aa7.18□□□□□ -1.26
CLN3-261ENST00000637686 OR11H2Q8NH07 326 aa7.18□□□□□ -1.26
CLN3-261ENST00000637686 OCC1Q8TAD7 63 aa7.18□□□□□ -1.26
CLN3-261ENST00000637686 LINC00479Q96M42 142 aa7.18□□□□□ -1.26
CLN3-261ENST00000637686 VGLL1Q99990 258 aa7.18□□□□□ -1.26
CLN3-261ENST00000637686 A0A087WWC5 75 aa7.17□□□□□ -1.26
CLN3-261ENST00000637686 C3orf84H3BNL1 204 aa7.17□□□□□ -1.26
CLN3-261ENST00000637686 APOC3P02656 99 aa7.17□□□□□ -1.26
CLN3-261ENST00000637686 AMBPP02760 352 aa7.17□□□□□ -1.26
CLN3-261ENST00000637686 ZNF705DP0CH99 300 aaPredicted RBP7.17□□□□□ -1.26
CLN3-261ENST00000637686 ZNF705BP0CI00 300 aaPredicted RBP7.17□□□□□ -1.26
CLN3-261ENST00000637686 PRB4P10163 310 aaPredicted RBP7.17□□□□□ -1.26
CLN3-261ENST00000637686 TSPOP30536 169 aa7.17□□□□□ -1.26
CLN3-261ENST00000637686 LEPP41159 167 aa7.17□□□□□ -1.26
CLN3-261ENST00000637686 NUTF2P61970 127 aaKnown RBP7.17□□□□□ -1.26
CLN3-261ENST00000637686 RHEBQ15382 184 aa7.17□□□□□ -1.26
CLN3-261ENST00000637686 SMUG1Q53HV7 270 aa7.17□□□□□ -1.26
CLN3-261ENST00000637686 PRNTQ86SH4 94 aa7.17□□□□□ -1.26
CLN3-261ENST00000637686 ISOC2Q96AB3 205 aa7.17□□□□□ -1.26
CLN3-261ENST00000637686 TMEM242Q9NWH2 141 aa7.17□□□□□ -1.26
CLN3-261ENST00000637686 XCL2Q9UBD3 114 aa7.17□□□□□ -1.26
CLN3-261ENST00000637686 KLLNB2CW77 178 aa7.16□□□□□ -1.26
CLN3-261ENST00000637686 PPP1R2P9O14990 202 aa7.16□□□□□ -1.26
CLN3-261ENST00000637686 CT45A10P0DMU9 189 aa7.16□□□□□ -1.26
CLN3-261ENST00000637686 ZFAND6Q6FIF0 208 aa7.16□□□□□ -1.26
CLN3-261ENST00000637686 AMTNQ6UX39 209 aa7.16□□□□□ -1.26
CLN3-261ENST00000637686 CSNK1G2-AS1Q8NCQ2 148 aa7.16□□□□□ -1.26
CLN3-261ENST00000637686 CLRN3Q8NCR9 226 aa7.16□□□□□ -1.26
CLN3-261ENST00000637686 ANAPC16Q96DE5 110 aa7.16□□□□□ -1.26
CLN3-261ENST00000637686 C20orf144Q9BQM9 153 aa7.16□□□□□ -1.26
CLN3-261ENST00000637686 C1QTNF4Q9BXJ3 329 aa7.16□□□□□ -1.26
CLN3-261ENST00000637686 CTDSP1Q9GZU7 261 aa7.16□□□□□ -1.26
CLN3-261ENST00000637686 OSTCQ9NRP0 149 aa7.16□□□□□ -1.26
CLN3-261ENST00000637686 DNAH7Q8WXX0 4024 aa7.16□□□□□ -1.26
CLN3-261ENST00000637686 K7EN84 100 aa7.15□□□□□ -1.26
CLN3-261ENST00000637686 DEFB4AO15263 64 aa7.15□□□□□ -1.26
CLN3-261ENST00000637686 MT-ND4LP03901 98 aa7.15□□□□□ -1.26
CLN3-261ENST00000637686 ERCC8Q13216 396 aa7.15□□□□□ -1.26
CLN3-261ENST00000637686 ADIRFQ15847 76 aa7.15□□□□□ -1.26
CLN3-261ENST00000637686 CT83Q5H943 113 aa7.15□□□□□ -1.26
CLN3-261ENST00000637686 CASC10Q5T4H9 136 aa7.15□□□□□ -1.26
CLN3-261ENST00000637686 Q6AWC8 147 aa7.15□□□□□ -1.26
CLN3-261ENST00000637686 ZFAND2AQ8N6M9 145 aa7.15□□□□□ -1.26
CLN3-261ENST00000637686 C19orf71A6NCJ1 209 aa7.14□□□□□ -1.27
CLN3-261ENST00000637686 FABP5P3A8MUU1 101 aa7.14□□□□□ -1.27
CLN3-261ENST00000637686 M0R036 132 aa7.14□□□□□ -1.27
CLN3-261ENST00000637686 PFN1P07737 140 aaKnown RBP7.14□□□□□ -1.27
CLN3-261ENST00000637686 CXCL1P09341 107 aa7.14□□□□□ -1.27
CLN3-261ENST00000637686 CDKN1BP46527 198 aa7.14□□□□□ -1.27
CLN3-261ENST00000637686 FAM162BQ5T6X4 162 aa7.14□□□□□ -1.27
CLN3-261ENST00000637686 C15orf54Q8N8G6 183 aa7.14□□□□□ -1.27
CLN3-261ENST00000637686 IL17DQ8TAD2 202 aa7.14□□□□□ -1.27
CLN3-261ENST00000637686 Q8TAT8 98 aa7.14□□□□□ -1.27
CLN3-261ENST00000637686 ZC2HC1AQ96GY0 325 aa7.14□□□□□ -1.27
CLN3-261ENST00000637686 SFRP2Q96HF1 295 aa7.14□□□□□ -1.27
CLN3-261ENST00000637686 SGK494Q96LW2 274 aa7.14□□□□□ -1.27
CLN3-261ENST00000637686 X6R8D5 127 aa7.14□□□□□ -1.27
CLN3-261ENST00000637686 IGHV3OR16-12A0A075B7B8 117 aa7.13□□□□□ -1.27
CLN3-261ENST00000637686 TRAV21A0A0B4J279 112 aa7.13□□□□□ -1.27
CLN3-261ENST00000637686 C7orf77A4D0Y5 90 aa7.13□□□□□ -1.27
CLN3-261ENST00000637686 FAM231BA6NCW3 169 aa7.13□□□□□ -1.27
CLN3-261ENST00000637686 CXorf65A6NEN9 183 aa7.13□□□□□ -1.27
CLN3-261ENST00000637686 PGPEP1LA6NFU8 196 aa7.13□□□□□ -1.27
CLN3-261ENST00000637686 M0R2Z0 102 aa7.13□□□□□ -1.27
CLN3-261ENST00000637686 MGST1P10620 155 aaKnown RBP7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms