RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 TMED6Q8WW62 240 aa8.84□□□□□ -0.99
UPF1-203ENST00000594504 LINC01587Q99440 93 aa8.84□□□□□ -0.99
UPF1-203ENST00000594504 TEX48A0A1B0GUV7 120 aa8.83□□□□□ -1
UPF1-203ENST00000594504 SERTM2A0A1B0GWG4 89 aa8.83□□□□□ -1
UPF1-203ENST00000594504 A0A1W2PRE2 83 aa8.83□□□□□ -1
UPF1-203ENST00000594504 C7orf71A4D174 169 aa8.83□□□□□ -1
UPF1-203ENST00000594504 ZNF705GA8MUZ8 300 aaPredicted RBP8.83□□□□□ -1
UPF1-203ENST00000594504 J3KRW8 73 aa8.83□□□□□ -1
UPF1-203ENST00000594504 FHITP49789 147 aa8.83□□□□□ -1
UPF1-203ENST00000594504 FGF8P55075 233 aaPredicted RBP8.83□□□□□ -1
UPF1-203ENST00000594504 GOLT1AQ6ZVE7 132 aa8.83□□□□□ -1
UPF1-203ENST00000594504 ZFAND2AQ8N6M9 145 aa8.83□□□□□ -1
UPF1-203ENST00000594504 Q8TAT8 98 aa8.83□□□□□ -1
UPF1-203ENST00000594504 FAM213BQ8TBF2 198 aa8.83□□□□□ -1
UPF1-203ENST00000594504 RPH3ALQ9UNE2 315 aa8.83□□□□□ -1
UPF1-203ENST00000594504 LENEPQ9Y5L5 61 aa8.83□□□□□ -1
UPF1-203ENST00000594504 PCLOQ9Y6V0 5065 aa8.83□□□□□ -1
UPF1-203ENST00000594504 TRAV12-3A0A0B4J271 114 aa8.82□□□□□ -1
UPF1-203ENST00000594504 GGTLC3B5MD39 225 aa8.82□□□□□ -1
UPF1-203ENST00000594504 GPX1P07203 203 aa8.82□□□□□ -1
UPF1-203ENST00000594504 SUMO1P63165 101 aaKnown RBP8.82□□□□□ -1
UPF1-203ENST00000594504 GNG5P63218 68 aa8.82□□□□□ -1
UPF1-203ENST00000594504 TMEM88Q6PEY1 159 aa8.82□□□□□ -1
UPF1-203ENST00000594504 Q6ZR54 194 aa8.82□□□□□ -1
UPF1-203ENST00000594504 SLC51BQ86UW2 128 aa8.82□□□□□ -1
UPF1-203ENST00000594504 C9orf62Q8N4C0 152 aa8.82□□□□□ -1
UPF1-203ENST00000594504 TMPRSS5Q9H3S3 457 aa8.82□□□□□ -1
UPF1-203ENST00000594504 NACAE9PAV3 2078 aa8.81□□□□□ -1
UPF1-203ENST00000594504 K7EQM0 130 aa8.81□□□□□ -1
UPF1-203ENST00000594504 TCRAP04437 139 aa8.81□□□□□ -1
UPF1-203ENST00000594504 MED14OSP0DP75 135 aa8.81□□□□□ -1
UPF1-203ENST00000594504 HTN1P15515 57 aa8.81□□□□□ -1
UPF1-203ENST00000594504 RNASE4P34096 147 aaKnown RBP8.81□□□□□ -1
UPF1-203ENST00000594504 RAB5CP51148 216 aa8.81□□□□□ -1
UPF1-203ENST00000594504 DAD1P61803 113 aa8.81□□□□□ -1
UPF1-203ENST00000594504 BTN1A1Q13410 526 aa8.81□□□□□ -1
UPF1-203ENST00000594504 ZNF493Q6ZR52 646 aa8.81□□□□□ -1
UPF1-203ENST00000594504 SFT2D1Q8WV19 159 aa8.81□□□□□ -1
UPF1-203ENST00000594504 MBD3L1Q8WWY6 194 aa8.81□□□□□ -1
UPF1-203ENST00000594504 PYGO2Q9BRQ0 406 aa8.81□□□□□ -1
UPF1-203ENST00000594504 NKX6-2Q9C056 277 aaPredicted RBP8.81□□□□□ -1
UPF1-203ENST00000594504 EPDR1Q9UM22 224 aa8.81□□□□□ -1
UPF1-203ENST00000594504 FAM74A7A6NL05 159 aa8.8□□□□□ -1
UPF1-203ENST00000594504 ZNF324O75467 553 aaPredicted RBP8.8□□□□□ -1
UPF1-203ENST00000594504 H2AFB1P0C5Y9 115 aa8.8□□□□□ -1
UPF1-203ENST00000594504 AZU1P20160 251 aa8.8□□□□□ -1
UPF1-203ENST00000594504 UBE2G2P60604 165 aa8.8□□□□□ -1
UPF1-203ENST00000594504 ZNF575Q86XF7 245 aa8.8□□□□□ -1
UPF1-203ENST00000594504 CCDC28AQ8IWP9 274 aa8.8□□□□□ -1
UPF1-203ENST00000594504 TMEM263Q8WUH6 116 aaKnown RBP8.8□□□□□ -1
UPF1-203ENST00000594504 C16orf74Q96GX8 76 aa8.8□□□□□ -1
UPF1-203ENST00000594504 FAM210BQ96KR6 192 aa8.8□□□□□ -1
UPF1-203ENST00000594504 ARL2-SNX15V9GYD0 113 aa8.8□□□□□ -1
UPF1-203ENST00000594504 FAT2Q9NYQ8 4349 aa8.8□□□□□ -1
UPF1-203ENST00000594504 DNAH2Q9P225 4427 aa8.8□□□□□ -1
UPF1-203ENST00000594504 DNAH17Q9UFH2 4485 aa8.8□□□□□ -1
UPF1-203ENST00000594504 TRAV8-1A0A0A6YYK1 113 aa8.79□□□□□ -1
UPF1-203ENST00000594504 FBLL1A6NHQ2 334 aaKnown RBP8.79□□□□□ -1
UPF1-203ENST00000594504 LYRM9A8MSI8 78 aa8.79□□□□□ -1
UPF1-203ENST00000594504 IFNA7P01567 189 aa8.79□□□□□ -1
UPF1-203ENST00000594504 RNF212Q495C1 297 aa8.79□□□□□ -1
UPF1-203ENST00000594504 PRR9Q5T870 116 aa8.79□□□□□ -1
UPF1-203ENST00000594504 CYB561D1Q8N8Q1 229 aa8.79□□□□□ -1
UPF1-203ENST00000594504 RNASE8Q8TDE3 154 aaKnown RBP8.79□□□□□ -1
UPF1-203ENST00000594504 LINC00467Q9BRT7 94 aa8.79□□□□□ -1
UPF1-203ENST00000594504 ATG101Q9BSB4 218 aa8.79□□□□□ -1
UPF1-203ENST00000594504 PLAC8L1A1L4L8 177 aa8.78□□□□□ -1
UPF1-203ENST00000594504 SULT1A2P50226 295 aa8.78□□□□□ -1
UPF1-203ENST00000594504 TCEAL7Q9BRU2 100 aa8.78□□□□□ -1
UPF1-203ENST00000594504 NDFIP1Q9BT67 221 aa8.78□□□□□ -1
UPF1-203ENST00000594504 KRTAP4-5Q9BYR2 181 aa8.78□□□□□ -1
UPF1-203ENST00000594504 TIMM8BQ9Y5J9 83 aaPredicted RBP8.78□□□□□ -1
UPF1-203ENST00000594504 RGS13O14921 159 aa8.77□□□□□ -1.01
UPF1-203ENST00000594504 DEFB130BP0DP73 79 aa8.77□□□□□ -1.01
UPF1-203ENST00000594504 DEFB130AP0DP74 79 aa8.77□□□□□ -1.01
UPF1-203ENST00000594504 PPT1P50897 306 aa8.77□□□□□ -1.01
UPF1-203ENST00000594504 ANXA2RQ3ZCQ2 193 aa8.77□□□□□ -1.01
UPF1-203ENST00000594504 C1orf134Q5TEV5 83 aa8.77□□□□□ -1.01
UPF1-203ENST00000594504 Q6AWC8 147 aa8.77□□□□□ -1.01
UPF1-203ENST00000594504 EIF4E3Q8N5X7 224 aaKnown RBP8.77□□□□□ -1.01
UPF1-203ENST00000594504 TMEM75Q8N9X5 138 aa8.77□□□□□ -1.01
UPF1-203ENST00000594504 ZNF680Q8NEM1 530 aa8.77□□□□□ -1.01
UPF1-203ENST00000594504 HIST1H2BAQ96A08 127 aa8.77□□□□□ -1.01
UPF1-203ENST00000594504 TREM1Q9NP99 234 aa8.77□□□□□ -1.01
UPF1-203ENST00000594504 PSG8Q9UQ74 426 aa8.77□□□□□ -1.01
UPF1-203ENST00000594504 TRAV1-1A0A0B4J248 108 aa8.76□□□□□ -1.01
UPF1-203ENST00000594504 A0A1B0GV50 99 aa8.76□□□□□ -1.01
UPF1-203ENST00000594504 F5H768 121 aa8.76□□□□□ -1.01
UPF1-203ENST00000594504 F6UZH7 168 aa8.76□□□□□ -1.01
UPF1-203ENST00000594504 TEX46H3BTG2 121 aa8.76□□□□□ -1.01
UPF1-203ENST00000594504 PEX7O00628 323 aa8.76□□□□□ -1.01
UPF1-203ENST00000594504 PAGE4O60829 102 aa8.76□□□□□ -1.01
UPF1-203ENST00000594504 IGLV2-11P01706 119 aa8.76□□□□□ -1.01
UPF1-203ENST00000594504 FLI1Q01543 452 aaPredicted RBP8.76□□□□□ -1.01
UPF1-203ENST00000594504 CST9LP1Q5W188 147 aa8.76□□□□□ -1.01
UPF1-203ENST00000594504 TVP23CQ96ET8 276 aa8.76□□□□□ -1.01
UPF1-203ENST00000594504 SGK494Q96LW2 274 aa8.76□□□□□ -1.01
UPF1-203ENST00000594504 DYNC1H1Q14204 4646 aaKnown RBP8.76□□□□□ -1.01
UPF1-203ENST00000594504 IGHV1OR15-1A0A075B7D0 117 aa8.75□□□□□ -1.01
UPF1-203ENST00000594504 CBY3A6NI87 242 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 84.9 ms