RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 IFNA7P01567 189 aa3.51□□□□□ -1.85
VPS53-219ENST00000576019 IGKV3-11P04433 115 aa3.51□□□□□ -1.85
VPS53-219ENST00000576019 MUC1P15941 1255 aaPredicted RBP3.51□□□□□ -1.85
VPS53-219ENST00000576019 G6PCP35575 357 aa3.51□□□□□ -1.85
VPS53-219ENST00000576019 EMP1P54849 157 aa3.51□□□□□ -1.85
VPS53-219ENST00000576019 LTC4SQ16873 150 aa3.51□□□□□ -1.85
VPS53-219ENST00000576019 DEFB134Q4QY38 66 aa3.51□□□□□ -1.85
VPS53-219ENST00000576019 PDZD9Q8IXQ8 264 aa3.51□□□□□ -1.85
VPS53-219ENST00000576019 OR5J2Q8NH18 312 aa3.51□□□□□ -1.85
VPS53-219ENST00000576019 MBD3L1Q8WWY6 194 aa3.51□□□□□ -1.85
VPS53-219ENST00000576019 H1FXQ92522 213 aaKnown RBP3.51□□□□□ -1.85
VPS53-219ENST00000576019 TTTY13Q9BZ97 58 aa3.51□□□□□ -1.85
VPS53-219ENST00000576019 MCTS1Q9ULC4 181 aaKnown RBP3.51□□□□□ -1.85
VPS53-219ENST00000576019 TP53TG3Q9ULZ0 132 aa3.51□□□□□ -1.85
VPS53-219ENST00000576019 IGKV1D-37A0A075B6S9 117 aa3.5□□□□□ -1.85
VPS53-219ENST00000576019 TRAV41A0A0B4J266 112 aa3.5□□□□□ -1.85
VPS53-219ENST00000576019 A0A1B0GW54 56 aa3.5□□□□□ -1.85
VPS53-219ENST00000576019 H3BQ85 93 aa3.5□□□□□ -1.85
VPS53-219ENST00000576019 M0R233 179 aa3.5□□□□□ -1.85
VPS53-219ENST00000576019 KPNA4O00629 521 aaPredicted RBP3.5□□□□□ -1.85
VPS53-219ENST00000576019 PRM2P04554 102 aa3.5□□□□□ -1.85
VPS53-219ENST00000576019 OR10J4P0C629 311 aa3.5□□□□□ -1.85
VPS53-219ENST00000576019 PIGPP57054 158 aa3.5□□□□□ -1.85
VPS53-219ENST00000576019 KLF3P57682 345 aaPredicted RBP3.5□□□□□ -1.85
VPS53-219ENST00000576019 LGALSLQ3ZCW2 172 aaPredicted RBP3.5□□□□□ -1.85
VPS53-219ENST00000576019 ZNF322Q6U7Q0 402 aaPredicted RBP3.5□□□□□ -1.85
VPS53-219ENST00000576019 LYZL2Q7Z4W2 148 aa3.5□□□□□ -1.85
VPS53-219ENST00000576019 Q8N2B8 174 aa3.5□□□□□ -1.85
VPS53-219ENST00000576019 ZNF561Q8N587 486 aa3.5□□□□□ -1.85
VPS53-219ENST00000576019 MALSU1Q96EH3 234 aa3.5□□□□□ -1.85
VPS53-219ENST00000576019 UPK3BQ9BT76 320 aa3.5□□□□□ -1.85
VPS53-219ENST00000576019 FUT9Q9Y231 359 aa3.5□□□□□ -1.85
VPS53-219ENST00000576019 LINC00587B1AMM8 73 aa3.49□□□□□ -1.85
VPS53-219ENST00000576019 IGKV1-5P01602 117 aa3.49□□□□□ -1.85
VPS53-219ENST00000576019 APOC1P02654 83 aa3.49□□□□□ -1.85
VPS53-219ENST00000576019 HIST1H2BOP23527 126 aa3.49□□□□□ -1.85
VPS53-219ENST00000576019 CRHBPP24387 322 aa3.49□□□□□ -1.85
VPS53-219ENST00000576019 SRIP30626 198 aa3.49□□□□□ -1.85
VPS53-219ENST00000576019 HIST1H2BBP33778 126 aa3.49□□□□□ -1.85
VPS53-219ENST00000576019 RPL27AP46776 148 aaKnown RBP3.49□□□□□ -1.85
VPS53-219ENST00000576019 SRP9P49458 86 aaKnown RBP3.49□□□□□ -1.85
VPS53-219ENST00000576019 EVX1P49640 407 aa3.49□□□□□ -1.85
VPS53-219ENST00000576019 ZNF80P51504 273 aaPredicted RBP3.49□□□□□ -1.85
VPS53-219ENST00000576019 HIST1H2BDP58876 126 aa3.49□□□□□ -1.85
VPS53-219ENST00000576019 HIST1H2BCP62807 126 aa3.49□□□□□ -1.85
VPS53-219ENST00000576019 CCL20P78556 96 aa3.49□□□□□ -1.85
VPS53-219ENST00000576019 DHRS2Q13268 280 aa3.49□□□□□ -1.85
VPS53-219ENST00000576019 HIST2H2BEQ16778 126 aa3.49□□□□□ -1.85
VPS53-219ENST00000576019 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.49□□□□□ -1.85
VPS53-219ENST00000576019 TMEM69Q5SWH9 247 aa3.49□□□□□ -1.85
VPS53-219ENST00000576019 AADACL3Q5VUY0 350 aa3.49□□□□□ -1.85
VPS53-219ENST00000576019 ZNF880Q6PDB4 577 aa3.49□□□□□ -1.85
VPS53-219ENST00000576019 TOMM20LQ6UXN7 152 aa3.49□□□□□ -1.85
VPS53-219ENST00000576019 TCF24Q7RTU0 167 aa3.49□□□□□ -1.85
VPS53-219ENST00000576019 BPIFB6Q8NFQ5 453 aa3.49□□□□□ -1.85
VPS53-219ENST00000576019 OR10D4PQ8NGN7 298 aa3.49□□□□□ -1.85
VPS53-219ENST00000576019 OR5C1Q8NGR4 320 aa3.49□□□□□ -1.85
VPS53-219ENST00000576019 ZNF675Q8TD23 568 aa3.49□□□□□ -1.85
VPS53-219ENST00000576019 KLF14Q8TD94 323 aaPredicted RBP3.49□□□□□ -1.85
VPS53-219ENST00000576019 HIST1H2BHQ93079 126 aa3.49□□□□□ -1.85
VPS53-219ENST00000576019 HIST1H2BNQ99877 126 aa3.49□□□□□ -1.85
VPS53-219ENST00000576019 HIST1H2BMQ99879 126 aa3.49□□□□□ -1.85
VPS53-219ENST00000576019 CCDC32Q9BV29 185 aa3.49□□□□□ -1.85
VPS53-219ENST00000576019 PBOV1Q9GZY1 135 aa3.49□□□□□ -1.85
VPS53-219ENST00000576019 PRR34Q9NV39 138 aa3.49□□□□□ -1.85
VPS53-219ENST00000576019 IL36BQ9NZH7 164 aa3.49□□□□□ -1.85
VPS53-219ENST00000576019 ASB4Q9Y574 426 aa3.49□□□□□ -1.85
VPS53-219ENST00000576019 S4R3C0 116 aa3.49□□□□□ -1.85
VPS53-219ENST00000576019 IGHV1-18A0A0C4DH31 117 aa3.48□□□□□ -1.85
VPS53-219ENST00000576019 DHRS12A0PJE2 317 aa3.48□□□□□ -1.85
VPS53-219ENST00000576019 GGT3PA6NGU5 568 aa3.48□□□□□ -1.85
VPS53-219ENST00000576019 J3QRK9 145 aa3.48□□□□□ -1.85
VPS53-219ENST00000576019 CST8O60676 142 aa3.48□□□□□ -1.85
VPS53-219ENST00000576019 IGHV1-69P01742 117 aa3.48□□□□□ -1.85
VPS53-219ENST00000576019 TAS2R30P59541 319 aa3.48□□□□□ -1.85
VPS53-219ENST00000576019 TAS2R20P59543 309 aa3.48□□□□□ -1.85
VPS53-219ENST00000576019 CCSMST1Q4G0I0 132 aa3.48□□□□□ -1.85
VPS53-219ENST00000576019 FAM229BQ4G0N7 80 aa3.48□□□□□ -1.85
VPS53-219ENST00000576019 RPL22L1Q6P5R6 122 aaKnown RBP3.48□□□□□ -1.85
VPS53-219ENST00000576019 SDIM1Q6ZPB5 146 aa3.48□□□□□ -1.85
VPS53-219ENST00000576019 Q6ZQT7 251 aa3.48□□□□□ -1.85
VPS53-219ENST00000576019 C3orf22Q8N5N4 141 aa3.48□□□□□ -1.85
VPS53-219ENST00000576019 PLEKHB2Q96CS7 222 aa3.48□□□□□ -1.85
VPS53-219ENST00000576019 DERL1Q9BUN8 251 aa3.48□□□□□ -1.85
VPS53-219ENST00000576019 TMEM138Q9NPI0 162 aa3.48□□□□□ -1.85
VPS53-219ENST00000576019 RFPL4AA6NLU0 287 aa3.47□□□□□ -1.85
VPS53-219ENST00000576019 RFPL4AL1F8VTS6 287 aa3.47□□□□□ -1.85
VPS53-219ENST00000576019 LEPROTO15243 131 aa3.47□□□□□ -1.85
VPS53-219ENST00000576019 NDUFB2O95178 105 aa3.47□□□□□ -1.85
VPS53-219ENST00000576019 IGHV3-53P01767 116 aa3.47□□□□□ -1.85
VPS53-219ENST00000576019 RPS4Y1P22090 263 aaKnown RBP3.47□□□□□ -1.85
VPS53-219ENST00000576019 DSCR4P56555 118 aaPredicted RBP3.47□□□□□ -1.85
VPS53-219ENST00000576019 SCGB2B2Q4G0G5 96 aa3.47□□□□□ -1.85
VPS53-219ENST00000576019 LYRM7Q5U5X0 104 aa3.47□□□□□ -1.85
VPS53-219ENST00000576019 ZNF660Q6AZW8 331 aaPredicted RBP3.47□□□□□ -1.85
VPS53-219ENST00000576019 IDO2Q6ZQW0 420 aa3.47□□□□□ -1.85
VPS53-219ENST00000576019 ZNF767PQ75MW2 155 aa3.47□□□□□ -1.85
VPS53-219ENST00000576019 OR13C4Q8NGS5 318 aa3.47□□□□□ -1.85
VPS53-219ENST00000576019 RNASE11Q8TAA1 199 aaKnown RBP3.47□□□□□ -1.85
VPS53-219ENST00000576019 C2orf50Q96LR7 162 aa3.47□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms