RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 DEFB130AP0DP74 79 aa8.39□□□□□ -1.07
YBX3-217ENST00000546164 RNASE4P34096 147 aaKnown RBP8.39□□□□□ -1.07
YBX3-217ENST00000546164 DAZ2Q13117 558 aaKnown RBP8.39□□□□□ -1.07
YBX3-217ENST00000546164 PRR9Q5T870 116 aa8.39□□□□□ -1.07
YBX3-217ENST00000546164 EIF4E3Q8N5X7 224 aaKnown RBP8.39□□□□□ -1.07
YBX3-217ENST00000546164 ZNF680Q8NEM1 530 aa8.39□□□□□ -1.07
YBX3-217ENST00000546164 HYLS1Q96M11 299 aa8.39□□□□□ -1.07
YBX3-217ENST00000546164 NOP10Q9NPE3 64 aaKnown RBP8.39□□□□□ -1.07
YBX3-217ENST00000546164 DNAH2Q9P225 4427 aa8.38□□□□□ -1.07
YBX3-217ENST00000546164 CTXND1A0A1B0GTU2 59 aa8.38□□□□□ -1.07
YBX3-217ENST00000546164 SERTM2A0A1B0GWG4 89 aa8.38□□□□□ -1.07
YBX3-217ENST00000546164 SNURFLB1AK76 121 aa8.38□□□□□ -1.07
YBX3-217ENST00000546164 ATP5G1P05496 136 aa8.38□□□□□ -1.07
YBX3-217ENST00000546164 ATP5G3P48201 142 aa8.38□□□□□ -1.07
YBX3-217ENST00000546164 ZNF726P1Q15940 193 aa8.38□□□□□ -1.07
YBX3-217ENST00000546164 SSX7Q7RTT5 188 aa8.38□□□□□ -1.07
YBX3-217ENST00000546164 C5orf17Q8NAS9 161 aa8.38□□□□□ -1.07
YBX3-217ENST00000546164 C11orf72Q8NBR9 251 aa8.38□□□□□ -1.07
YBX3-217ENST00000546164 OR11H4Q8NGC9 324 aa8.38□□□□□ -1.07
YBX3-217ENST00000546164 ARPC5LQ9BPX5 153 aa8.38□□□□□ -1.07
YBX3-217ENST00000546164 A0A0D9SG52 128 aa8.37□□□□□ -1.07
YBX3-217ENST00000546164 P0DMU3 169 aa8.37□□□□□ -1.07
YBX3-217ENST00000546164 FAM231AP0DMU4 169 aa8.37□□□□□ -1.07
YBX3-217ENST00000546164 FAM231CP0DMU5 169 aa8.37□□□□□ -1.07
YBX3-217ENST00000546164 HTN3P15516 51 aa8.37□□□□□ -1.07
YBX3-217ENST00000546164 AKR1C8PQ5T2L2 129 aa8.37□□□□□ -1.07
YBX3-217ENST00000546164 IBA57Q5T440 356 aaKnown RBP8.37□□□□□ -1.07
YBX3-217ENST00000546164 Q6AWC8 147 aa8.37□□□□□ -1.07
YBX3-217ENST00000546164 GOLT1AQ6ZVE7 132 aa8.37□□□□□ -1.07
YBX3-217ENST00000546164 C18orf15Q96N68 181 aa8.37□□□□□ -1.07
YBX3-217ENST00000546164 IGHV1OR15-1A0A075B7D0 117 aa8.36□□□□□ -1.07
YBX3-217ENST00000546164 A0A1W2PRE2 83 aa8.36□□□□□ -1.07
YBX3-217ENST00000546164 GGTLC3B5MD39 225 aa8.36□□□□□ -1.07
YBX3-217ENST00000546164 TCRAP04437 139 aa8.36□□□□□ -1.07
YBX3-217ENST00000546164 TMEM88Q6PEY1 159 aa8.36□□□□□ -1.07
YBX3-217ENST00000546164 C15orf53Q8NAA6 179 aa8.36□□□□□ -1.07
YBX3-217ENST00000546164 FRAS1Q86XX4 4008 aa8.35□□□□□ -1.07
YBX3-217ENST00000546164 TRAV8-1A0A0A6YYK1 113 aa8.35□□□□□ -1.07
YBX3-217ENST00000546164 RGS13O14921 159 aa8.35□□□□□ -1.07
YBX3-217ENST00000546164 BCL2L11O43521 198 aa8.35□□□□□ -1.07
YBX3-217ENST00000546164 SEC11BP0C7V7 166 aa8.35□□□□□ -1.07
YBX3-217ENST00000546164 TCL1AP56279 114 aa8.35□□□□□ -1.07
YBX3-217ENST00000546164 GNG5P63218 68 aa8.35□□□□□ -1.07
YBX3-217ENST00000546164 Q6ZNX1 250 aa8.35□□□□□ -1.07
YBX3-217ENST00000546164 Q6ZQT7 251 aa8.35□□□□□ -1.07
YBX3-217ENST00000546164 GSN-AS1Q9NRJ2 163 aa8.35□□□□□ -1.07
YBX3-217ENST00000546164 RPH3ALQ9UNE2 315 aa8.35□□□□□ -1.07
YBX3-217ENST00000546164 DNAH17Q9UFH2 4485 aa8.35□□□□□ -1.07
YBX3-217ENST00000546164 KANTRA0A1W2PQU2 76 aa8.34□□□□□ -1.07
YBX3-217ENST00000546164 FBLL1A6NHQ2 334 aaKnown RBP8.34□□□□□ -1.07
YBX3-217ENST00000546164 F5H768 121 aa8.34□□□□□ -1.07
YBX3-217ENST00000546164 K7EQM0 130 aa8.34□□□□□ -1.07
YBX3-217ENST00000546164 SPINK4O60575 86 aa8.34□□□□□ -1.07
YBX3-217ENST00000546164 SUMO1P63165 101 aaKnown RBP8.34□□□□□ -1.07
YBX3-217ENST00000546164 TDRG1Q3Y452 100 aa8.34□□□□□ -1.07
YBX3-217ENST00000546164 TCTE3Q8IZS6 198 aa8.34□□□□□ -1.07
YBX3-217ENST00000546164 POM121L12Q8N7R1 296 aa8.34□□□□□ -1.07
YBX3-217ENST00000546164 TVP23CQ96ET8 276 aa8.34□□□□□ -1.07
YBX3-217ENST00000546164 EPDR1Q9UM22 224 aa8.34□□□□□ -1.07
YBX3-217ENST00000546164 GAGE12BA1L429 117 aa8.33□□□□□ -1.08
YBX3-217ENST00000546164 MAP1LC3B2A6NCE7 125 aa8.33□□□□□ -1.08
YBX3-217ENST00000546164 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.33□□□□□ -1.08
YBX3-217ENST00000546164 UMAD1C9J7I0 102 aa8.33□□□□□ -1.08
YBX3-217ENST00000546164 GAGE7O76087 117 aa8.33□□□□□ -1.08
YBX3-217ENST00000546164 IGLV2-11P01706 119 aa8.33□□□□□ -1.08
YBX3-217ENST00000546164 GAGE12FP0CL80 117 aa8.33□□□□□ -1.08
YBX3-217ENST00000546164 GAGE12GP0CL81 117 aa8.33□□□□□ -1.08
YBX3-217ENST00000546164 GAGE12IP0CL82 117 aa8.33□□□□□ -1.08
YBX3-217ENST00000546164 EIF5AP63241 154 aaKnown RBP8.33□□□□□ -1.08
YBX3-217ENST00000546164 LGALS9BQ3B8N2 356 aa8.33□□□□□ -1.08
YBX3-217ENST00000546164 Q6ZTI0 123 aa8.33□□□□□ -1.08
YBX3-217ENST00000546164 IQCF2Q8IXL9 164 aa8.33□□□□□ -1.08
YBX3-217ENST00000546164 CYB561D1Q8N8Q1 229 aa8.33□□□□□ -1.08
YBX3-217ENST00000546164 ATG101Q9BSB4 218 aa8.33□□□□□ -1.08
YBX3-217ENST00000546164 ZNF471Q9BX82 626 aaPredicted RBP8.33□□□□□ -1.08
YBX3-217ENST00000546164 NKX6-2Q9C056 277 aaPredicted RBP8.33□□□□□ -1.08
YBX3-217ENST00000546164 MAP1LC3BQ9GZQ8 125 aa8.33□□□□□ -1.08
YBX3-217ENST00000546164 TMPRSS5Q9H3S3 457 aa8.33□□□□□ -1.08
YBX3-217ENST00000546164 TREM1Q9NP99 234 aa8.33□□□□□ -1.08
YBX3-217ENST00000546164 TP53TG3Q9ULZ0 132 aa8.33□□□□□ -1.08
YBX3-217ENST00000546164 KLF12Q9Y4X4 402 aa8.33□□□□□ -1.08
YBX3-217ENST00000546164 FAT2Q9NYQ8 4349 aa8.33□□□□□ -1.08
YBX3-217ENST00000546164 TRAV21A0A0B4J279 112 aa8.32□□□□□ -1.08
YBX3-217ENST00000546164 FAM74A7A6NL05 159 aa8.32□□□□□ -1.08
YBX3-217ENST00000546164 FGF8P55075 233 aaPredicted RBP8.32□□□□□ -1.08
YBX3-217ENST00000546164 FLI1Q01543 452 aaPredicted RBP8.32□□□□□ -1.08
YBX3-217ENST00000546164 ZNF415Q09FC8 603 aa8.32□□□□□ -1.08
YBX3-217ENST00000546164 RNF212Q495C1 297 aa8.32□□□□□ -1.08
YBX3-217ENST00000546164 MUC21Q5SSG8 566 aa8.32□□□□□ -1.08
YBX3-217ENST00000546164 FAM159AQ6UWV7 190 aa8.32□□□□□ -1.08
YBX3-217ENST00000546164 TMUB2Q71RG4 321 aa8.32□□□□□ -1.08
YBX3-217ENST00000546164 TMEM75Q8N9X5 138 aa8.32□□□□□ -1.08
YBX3-217ENST00000546164 STOML3Q8TAV4 291 aa8.32□□□□□ -1.08
YBX3-217ENST00000546164 NDFIP1Q9BT67 221 aa8.32□□□□□ -1.08
YBX3-217ENST00000546164 KRTAP9-2Q9BYQ4 174 aa8.32□□□□□ -1.08
YBX3-217ENST00000546164 PSG8Q9UQ74 426 aa8.32□□□□□ -1.08
YBX3-217ENST00000546164 ARL2-SNX15V9GYD0 113 aa8.32□□□□□ -1.08
YBX3-217ENST00000546164 TRGV11A0A075B6L2 103 aa8.31□□□□□ -1.08
YBX3-217ENST00000546164 TRGV1A0A0A0MS02 117 aa8.31□□□□□ -1.08
YBX3-217ENST00000546164 H3BNG1 76 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms