RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 TMEM75Q8N9X5 138 aa9.08□□□□□ -0.96
CLSTN3-208ENST00000538933 RNF183Q96D59 192 aa9.08□□□□□ -0.96
CLSTN3-208ENST00000538933 FMC1Q96HJ9 113 aa9.08□□□□□ -0.96
CLSTN3-208ENST00000538933 SGK494Q96LW2 274 aa9.08□□□□□ -0.96
CLSTN3-208ENST00000538933 SLC35B3Q9H1N7 401 aa9.08□□□□□ -0.96
CLSTN3-208ENST00000538933 TRAV34A0A0B4J273 112 aa9.07□□□□□ -0.96
CLSTN3-208ENST00000538933 NDUFS6O75380 124 aaKnown RBP9.07□□□□□ -0.96
CLSTN3-208ENST00000538933 SRP19P09132 144 aaKnown RBP9.07□□□□□ -0.96
CLSTN3-208ENST00000538933 HLA-DRB4P13762 266 aa9.07□□□□□ -0.96
CLSTN3-208ENST00000538933 SRSF3P84103 164 aaKnown RBP9.07□□□□□ -0.96
CLSTN3-208ENST00000538933 FLI1Q01543 452 aaPredicted RBP9.07□□□□□ -0.96
CLSTN3-208ENST00000538933 ERCC8Q13216 396 aa9.07□□□□□ -0.96
CLSTN3-208ENST00000538933 GDF5OSQ5U4N7 250 aa9.07□□□□□ -0.96
CLSTN3-208ENST00000538933 C11orf52Q96A22 123 aa9.07□□□□□ -0.96
CLSTN3-208ENST00000538933 LINC00477Q96M19 166 aa9.07□□□□□ -0.96
CLSTN3-208ENST00000538933 VGLL1Q99990 258 aa9.07□□□□□ -0.96
CLSTN3-208ENST00000538933 APLNQ9ULZ1 77 aa9.07□□□□□ -0.96
CLSTN3-208ENST00000538933 PSG8Q9UQ74 426 aa9.07□□□□□ -0.96
CLSTN3-208ENST00000538933 HLA-DRB4X5D2U9 266 aa9.07□□□□□ -0.96
CLSTN3-208ENST00000538933 TRAV8-1A0A0A6YYK1 113 aa9.06□□□□□ -0.96
CLSTN3-208ENST00000538933 PRSS29PA6NIE9 313 aa9.06□□□□□ -0.96
CLSTN3-208ENST00000538933 ZNF727A8MUV8 499 aa9.06□□□□□ -0.96
CLSTN3-208ENST00000538933 NPIPB6E9PJ23 425 aa9.06□□□□□ -0.96
CLSTN3-208ENST00000538933 TSPOP30536 169 aa9.06□□□□□ -0.96
CLSTN3-208ENST00000538933 RPL35P42766 123 aaKnown RBP9.06□□□□□ -0.96
CLSTN3-208ENST00000538933 ZNF138P52744 262 aa9.06□□□□□ -0.96
CLSTN3-208ENST00000538933 TCTAP57738 103 aa9.06□□□□□ -0.96
CLSTN3-208ENST00000538933 NANOS2P60321 138 aaKnown RBP9.06□□□□□ -0.96
CLSTN3-208ENST00000538933 NUTF2P61970 127 aaKnown RBP9.06□□□□□ -0.96
CLSTN3-208ENST00000538933 TMEM183BQ1AE95 376 aa9.06□□□□□ -0.96
CLSTN3-208ENST00000538933 SOHLH1Q5JUK2 328 aa9.06□□□□□ -0.96
CLSTN3-208ENST00000538933 C9orf47Q6ZRZ4 202 aa9.06□□□□□ -0.96
CLSTN3-208ENST00000538933 C2CD4CQ8TF44 421 aa9.06□□□□□ -0.96
CLSTN3-208ENST00000538933 SMIM7Q9BQ49 75 aa9.06□□□□□ -0.96
CLSTN3-208ENST00000538933 PARLQ9H300 379 aa9.06□□□□□ -0.96
CLSTN3-208ENST00000538933 DMBT1Q9UGM3 2413 aaPredicted RBP9.05□□□□□ -0.96
CLSTN3-208ENST00000538933 H3BMM0 161 aa9.05□□□□□ -0.96
CLSTN3-208ENST00000538933 J3KRW8 73 aa9.05□□□□□ -0.96
CLSTN3-208ENST00000538933 SFTA3P0C7M3 94 aa9.05□□□□□ -0.96
CLSTN3-208ENST00000538933 RPL35AP18077 110 aaKnown RBP9.05□□□□□ -0.96
CLSTN3-208ENST00000538933 LEPP41159 167 aa9.05□□□□□ -0.96
CLSTN3-208ENST00000538933 GNG4P50150 75 aa9.05□□□□□ -0.96
CLSTN3-208ENST00000538933 TAS2R60P59551 318 aa9.05□□□□□ -0.96
CLSTN3-208ENST00000538933 Q86TA4 180 aa9.05□□□□□ -0.96
CLSTN3-208ENST00000538933 Q8TAT8 98 aa9.05□□□□□ -0.96
CLSTN3-208ENST00000538933 LINC00479Q96M42 142 aa9.05□□□□□ -0.96
CLSTN3-208ENST00000538933 DERL1Q9BUN8 251 aa9.05□□□□□ -0.96
CLSTN3-208ENST00000538933 AGPAT4-IT1Q9H0P7 198 aa9.05□□□□□ -0.96
CLSTN3-208ENST00000538933 UBE2CO00762 179 aa9.04□□□□□ -0.96
CLSTN3-208ENST00000538933 CT45A10P0DMU9 189 aa9.04□□□□□ -0.96
CLSTN3-208ENST00000538933 FAM74A3Q4VXF1 159 aa9.04□□□□□ -0.96
CLSTN3-208ENST00000538933 CENPWQ5EE01 88 aa9.04□□□□□ -0.96
CLSTN3-208ENST00000538933 SAPCD1Q5SSQ6 148 aa9.04□□□□□ -0.96
CLSTN3-208ENST00000538933 ZNF575Q86XF7 245 aa9.04□□□□□ -0.96
CLSTN3-208ENST00000538933 BAGE2Q86Y30 109 aa9.04□□□□□ -0.96
CLSTN3-208ENST00000538933 EIF4E3Q8N5X7 224 aaKnown RBP9.04□□□□□ -0.96
CLSTN3-208ENST00000538933 ZNF492Q9P255 531 aa9.04□□□□□ -0.96
CLSTN3-208ENST00000538933 ZFP30Q9Y2G7 519 aa9.04□□□□□ -0.96
CLSTN3-208ENST00000538933 F8W036 122 aa9.03□□□□□ -0.96
CLSTN3-208ENST00000538933 GPX1P07203 203 aa9.03□□□□□ -0.96
CLSTN3-208ENST00000538933 MGST1P10620 155 aaKnown RBP9.03□□□□□ -0.96
CLSTN3-208ENST00000538933 APOC4P55056 127 aa9.03□□□□□ -0.96
CLSTN3-208ENST00000538933 FXYD7P58549 80 aa9.03□□□□□ -0.96
CLSTN3-208ENST00000538933 TRPT1Q86TN4 253 aaKnown RBP9.03□□□□□ -0.96
CLSTN3-208ENST00000538933 SLC7A5P1Q8MH63 180 aa9.03□□□□□ -0.96
CLSTN3-208ENST00000538933 ODF3Q96PU9 254 aa9.03□□□□□ -0.96
CLSTN3-208ENST00000538933 LENEPQ9Y5L5 61 aa9.03□□□□□ -0.96
CLSTN3-208ENST00000538933 DNAH5Q8TE73 4624 aa9.03□□□□□ -0.96
CLSTN3-208ENST00000538933 KIR2DL5BA0A0G2JN68 375 aa9.02□□□□□ -0.97
CLSTN3-208ENST00000538933 KIR2DL5BA0A0G2JPC4 375 aa9.02□□□□□ -0.97
CLSTN3-208ENST00000538933 TRBV6-1A0A0K0K1D8 114 aa9.02□□□□□ -0.97
CLSTN3-208ENST00000538933 C9JQL5 133 aa9.02□□□□□ -0.97
CLSTN3-208ENST00000538933 AMBPP02760 352 aa9.02□□□□□ -0.97
CLSTN3-208ENST00000538933 CDKN1BP46527 198 aa9.02□□□□□ -0.97
CLSTN3-208ENST00000538933 SPINK13Q1W4C9 94 aa9.02□□□□□ -0.97
CLSTN3-208ENST00000538933 SMUG1Q53HV7 270 aa9.02□□□□□ -0.97
CLSTN3-208ENST00000538933 MORN3Q6PF18 240 aaPredicted RBP9.02□□□□□ -0.97
CLSTN3-208ENST00000538933 KIR2DL5AQ8N109 375 aa9.02□□□□□ -0.97
CLSTN3-208ENST00000538933 NHLRC2Q8NBF2 726 aa9.02□□□□□ -0.97
CLSTN3-208ENST00000538933 KIR2DL5BQ8NHK3 375 aa9.02□□□□□ -0.97
CLSTN3-208ENST00000538933 NIPSNAP3BQ9BS92 247 aa9.02□□□□□ -0.97
CLSTN3-208ENST00000538933 BIN3Q9NQY0 253 aa9.02□□□□□ -0.97
CLSTN3-208ENST00000538933 KLF12Q9Y4X4 402 aa9.02□□□□□ -0.97
CLSTN3-208ENST00000538933 SRRM2Q9UQ35 2752 aaKnown RBP9.02□□□□□ -0.97
CLSTN3-208ENST00000538933 TMEM218A2RU14 115 aa9.01□□□□□ -0.97
CLSTN3-208ENST00000538933 C9JCJ5 164 aa9.01□□□□□ -0.97
CLSTN3-208ENST00000538933 M0R2Z0 102 aa9.01□□□□□ -0.97
CLSTN3-208ENST00000538933 LTAP01374 205 aa9.01□□□□□ -0.97
CLSTN3-208ENST00000538933 IGLV2-11P01706 119 aa9.01□□□□□ -0.97
CLSTN3-208ENST00000538933 TMEM241Q24JQ0 296 aa9.01□□□□□ -0.97
CLSTN3-208ENST00000538933 C11orf45Q8TAV5 145 aa9.01□□□□□ -0.97
CLSTN3-208ENST00000538933 C8orf49Q96NF6 230 aa9.01□□□□□ -0.97
CLSTN3-208ENST00000538933 CLUHP3Q96NS8 147 aa9.01□□□□□ -0.97
CLSTN3-208ENST00000538933 C1QTNF4Q9BXJ3 329 aa9.01□□□□□ -0.97
CLSTN3-208ENST00000538933 NAT8Q9UHE5 227 aa9.01□□□□□ -0.97
CLSTN3-208ENST00000538933 TRBV7-9A0A0J9YWB2 115 aa9□□□□□ -0.97
CLSTN3-208ENST00000538933 CA1P00915 261 aaPredicted RBP9□□□□□ -0.97
CLSTN3-208ENST00000538933 INSP01308 110 aa9□□□□□ -0.97
CLSTN3-208ENST00000538933 RNASE4P34096 147 aaKnown RBP9□□□□□ -0.97
CLSTN3-208ENST00000538933 PRR27Q6MZM9 219 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms