RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 RPH3ALQ9UNE2 315 aa11.48□□□□□ -0.57
LSM1-205ENST00000523511 ARL14EPLP0DKL9 152 aa11.47□□□□□ -0.57
LSM1-205ENST00000523511 RPL7L1Q6DKI1 246 aaKnown RBP11.47□□□□□ -0.57
LSM1-205ENST00000523511 Q8TAT8 98 aa11.47□□□□□ -0.57
LSM1-205ENST00000523511 TRGV1A0A0A0MS02 117 aa11.46□□□□□ -0.57
LSM1-205ENST00000523511 FBLL1A6NHQ2 334 aaKnown RBP11.46□□□□□ -0.57
LSM1-205ENST00000523511 TCL1AP56279 114 aa11.46□□□□□ -0.57
LSM1-205ENST00000523511 ZNF415Q09FC8 603 aa11.46□□□□□ -0.57
LSM1-205ENST00000523511 LGALS9BQ3B8N2 356 aa11.46□□□□□ -0.57
LSM1-205ENST00000523511 SOHLH1Q5JUK2 328 aa11.46□□□□□ -0.57
LSM1-205ENST00000523511 AKR1C8PQ5T2L2 129 aa11.46□□□□□ -0.57
LSM1-205ENST00000523511 GOLT1AQ6ZVE7 132 aa11.46□□□□□ -0.57
LSM1-205ENST00000523511 IQCF2Q8IXL9 164 aa11.46□□□□□ -0.57
LSM1-205ENST00000523511 TRGV11A0A075B6L2 103 aa11.45□□□□□ -0.58
LSM1-205ENST00000523511 TRAV21A0A0B4J279 112 aa11.45□□□□□ -0.58
LSM1-205ENST00000523511 RNF222A6NCQ9 220 aa11.45□□□□□ -0.58
LSM1-205ENST00000523511 H3BNG1 76 aa11.45□□□□□ -0.58
LSM1-205ENST00000523511 ARPC5O15511 151 aa11.45□□□□□ -0.58
LSM1-205ENST00000523511 EIF3GO75821 320 aaKnown RBP eCLIP11.45□□□□□ -0.58
LSM1-205ENST00000523511 GCHFRP30047 84 aa11.45□□□□□ -0.58
LSM1-205ENST00000523511 SLAQ13239 276 aa11.45□□□□□ -0.58
LSM1-205ENST00000523511 LINC00336Q6ZUF6 198 aa11.45□□□□□ -0.58
LSM1-205ENST00000523511 C5orf17Q8NAS9 161 aa11.45□□□□□ -0.58
LSM1-205ENST00000523511 C18orf15Q96N68 181 aa11.45□□□□□ -0.58
LSM1-205ENST00000523511 SPINK4O60575 86 aa11.44□□□□□ -0.58
LSM1-205ENST00000523511 Q6AWC8 147 aa11.44□□□□□ -0.58
LSM1-205ENST00000523511 Q6ZTI0 123 aa11.44□□□□□ -0.58
LSM1-205ENST00000523511 C11orf72Q8NBR9 251 aa11.44□□□□□ -0.58
LSM1-205ENST00000523511 SUN5Q8TC36 379 aa11.44□□□□□ -0.58
LSM1-205ENST00000523511 SPXQ9BT56 116 aa11.44□□□□□ -0.58
LSM1-205ENST00000523511 NKX6-2Q9C056 277 aaPredicted RBP11.44□□□□□ -0.58
LSM1-205ENST00000523511 SH3BGRL3Q9H299 93 aa11.44□□□□□ -0.58
LSM1-205ENST00000523511 TREM1Q9NP99 234 aa11.44□□□□□ -0.58
LSM1-205ENST00000523511 TRAV26-1A0A087WT03 109 aa11.43□□□□□ -0.58
LSM1-205ENST00000523511 CTXND1A0A1B0GTU2 59 aa11.43□□□□□ -0.58
LSM1-205ENST00000523511 SUMO1P63165 101 aaKnown RBP11.43□□□□□ -0.58
LSM1-205ENST00000523511 STOML3Q8TAV4 291 aa11.43□□□□□ -0.58
LSM1-205ENST00000523511 KCNS1Q96KK3 526 aa11.43□□□□□ -0.58
LSM1-205ENST00000523511 KLF12Q9Y4X4 402 aa11.43□□□□□ -0.58
LSM1-205ENST00000523511 A0A1W2PRE2 83 aa11.42□□□□□ -0.58
LSM1-205ENST00000523511 ZFP69Q49AA0 526 aa11.42□□□□□ -0.58
LSM1-205ENST00000523511 MUC21Q5SSG8 566 aa11.42□□□□□ -0.58
LSM1-205ENST00000523511 PRR9Q5T870 116 aa11.42□□□□□ -0.58
LSM1-205ENST00000523511 EPDR1Q9UM22 224 aa11.42□□□□□ -0.58
LSM1-205ENST00000523511 M0R2N4 97 aa11.41□□□□□ -0.58
LSM1-205ENST00000523511 TCRAP04437 139 aa11.41□□□□□ -0.58
LSM1-205ENST00000523511 PPT1P50897 306 aa11.41□□□□□ -0.58
LSM1-205ENST00000523511 EIF5AP63241 154 aaKnown RBP11.41□□□□□ -0.58
LSM1-205ENST00000523511 SAPCD1Q5SSQ6 148 aa11.41□□□□□ -0.58
LSM1-205ENST00000523511 TMPRSS5Q9H3S3 457 aa11.41□□□□□ -0.58
LSM1-205ENST00000523511 NAGKQ9UJ70 344 aa11.41□□□□□ -0.58
LSM1-205ENST00000523511 TP53TG3Q9ULZ0 132 aa11.41□□□□□ -0.58
LSM1-205ENST00000523511 IGLV2-18A0A075B6J9 118 aa11.4□□□□□ -0.58
LSM1-205ENST00000523511 A0A0D9SG52 128 aa11.4□□□□□ -0.58
LSM1-205ENST00000523511 A0A0J9YY99 117 aa11.4□□□□□ -0.58
LSM1-205ENST00000523511 HMSDA8MTL9 139 aa11.4□□□□□ -0.58
LSM1-205ENST00000523511 IFNA7P01567 189 aa11.4□□□□□ -0.58
LSM1-205ENST00000523511 GNG5P63218 68 aa11.4□□□□□ -0.58
LSM1-205ENST00000523511 ZNF345Q14585 488 aa11.4□□□□□ -0.58
LSM1-205ENST00000523511 TDRG1Q3Y452 100 aa11.4□□□□□ -0.58
LSM1-205ENST00000523511 CYB561D1Q8N8Q1 229 aa11.4□□□□□ -0.58
LSM1-205ENST00000523511 SDF2L1Q9HCN8 221 aa11.4□□□□□ -0.58
LSM1-205ENST00000523511 F6UZH7 168 aa11.39□□□□□ -0.59
LSM1-205ENST00000523511 HOXA5P20719 270 aa11.39□□□□□ -0.59
LSM1-205ENST00000523511 TMEM183BQ1AE95 376 aa11.39□□□□□ -0.59
LSM1-205ENST00000523511 TMEM183AQ8IXX5 376 aa11.39□□□□□ -0.59
LSM1-205ENST00000523511 KCNRGQ8N5I3 272 aa11.39□□□□□ -0.59
LSM1-205ENST00000523511 PSG8Q9UQ74 426 aa11.39□□□□□ -0.59
LSM1-205ENST00000523511 TRAV8-1A0A0A6YYK1 113 aa11.38□□□□□ -0.59
LSM1-205ENST00000523511 KANTRA0A1W2PQU2 76 aa11.38□□□□□ -0.59
LSM1-205ENST00000523511 FLI1Q01543 452 aaPredicted RBP11.38□□□□□ -0.59
LSM1-205ENST00000523511 SMUG1Q53HV7 270 aa11.38□□□□□ -0.59
LSM1-205ENST00000523511 SSX7Q7RTT5 188 aa11.38□□□□□ -0.59
LSM1-205ENST00000523511 TMEM75Q8N9X5 138 aa11.38□□□□□ -0.59
LSM1-205ENST00000523511 MRPL16Q9NX20 251 aaKnown RBP11.38□□□□□ -0.59
LSM1-205ENST00000523511 MDFICQ9P1T7 246 aa11.38□□□□□ -0.59
LSM1-205ENST00000523511 PRO0255Q9UI72 69 aa11.38□□□□□ -0.59
LSM1-205ENST00000523511 UMAD1C9J7I0 102 aa11.37□□□□□ -0.59
LSM1-205ENST00000523511 PAX4O43316 350 aa11.37□□□□□ -0.59
LSM1-205ENST00000523511 RASL10AQ92737 203 aa11.37□□□□□ -0.59
LSM1-205ENST00000523511 HIST1H2BAQ96A08 127 aa11.37□□□□□ -0.59
LSM1-205ENST00000523511 CYTL1Q9NRR1 136 aa11.37□□□□□ -0.59
LSM1-205ENST00000523511 HHLA3Q9XRX5 114 aa11.37□□□□□ -0.59
LSM1-205ENST00000523511 TRGV4A0A0C4DH28 118 aa11.36□□□□□ -0.59
LSM1-205ENST00000523511 G3V3Q6 166 aa11.36□□□□□ -0.59
LSM1-205ENST00000523511 SEC11BP0C7V7 166 aa11.36□□□□□ -0.59
LSM1-205ENST00000523511 C1orf134Q5TEV5 83 aa11.36□□□□□ -0.59
LSM1-205ENST00000523511 Q6ZQT7 251 aa11.36□□□□□ -0.59
LSM1-205ENST00000523511 PRNTQ86SH4 94 aa11.36□□□□□ -0.59
LSM1-205ENST00000523511 SGK494Q96LW2 274 aa11.36□□□□□ -0.59
LSM1-205ENST00000523511 LINC00588Q9Y4M8 146 aa11.36□□□□□ -0.59
LSM1-205ENST00000523511 KMT2AQ03164 3969 aa11.36□□□□□ -0.59
LSM1-205ENST00000523511 EPPK1P58107 5090 aaKnown RBP11.36□□□□□ -0.59
LSM1-205ENST00000523511 MAP1LC3B2A6NCE7 125 aa11.35□□□□□ -0.59
LSM1-205ENST00000523511 GGTLC3B5MD39 225 aa11.35□□□□□ -0.59
LSM1-205ENST00000523511 SMLR1H3BR10 107 aa11.35□□□□□ -0.59
LSM1-205ENST00000523511 M0R2P5 195 aa11.35□□□□□ -0.59
LSM1-205ENST00000523511 PFDN1O60925 122 aa11.35□□□□□ -0.59
LSM1-205ENST00000523511 GCGP01275 180 aa11.35□□□□□ -0.59
LSM1-205ENST00000523511 Q6ZR54 194 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms