RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 CLPSP04118 112 aa4.49□□□□□ -1.69
LSM1-202ENST00000520286 CDC34P49427 236 aaPredicted RBP4.49□□□□□ -1.69
LSM1-202ENST00000520286 KRTDAPP60985 99 aa4.49□□□□□ -1.69
LSM1-202ENST00000520286 PSG4Q00888 419 aa4.49□□□□□ -1.69
LSM1-202ENST00000520286 CLEC12BQ2HXU8 276 aa4.49□□□□□ -1.69
LSM1-202ENST00000520286 DEFB134Q4QY38 66 aa4.49□□□□□ -1.69
LSM1-202ENST00000520286 C5orf47Q569G3 176 aa4.49□□□□□ -1.69
LSM1-202ENST00000520286 BVES-AS1Q5T3Y7 98 aa4.49□□□□□ -1.69
LSM1-202ENST00000520286 SAMD13Q5VXD3 122 aa4.49□□□□□ -1.69
LSM1-202ENST00000520286 TCF23Q7RTU1 214 aa4.49□□□□□ -1.69
LSM1-202ENST00000520286 NEGR1Q7Z3B1 354 aa4.49□□□□□ -1.69
LSM1-202ENST00000520286 RPP25LQ8N5L8 163 aaKnown RBP4.49□□□□□ -1.69
LSM1-202ENST00000520286 FER1L6-AS1Q8NA97 138 aa4.49□□□□□ -1.69
LSM1-202ENST00000520286 OR8B12Q8NGG6 310 aa4.49□□□□□ -1.69
LSM1-202ENST00000520286 OR11L1Q8NGX0 322 aa4.49□□□□□ -1.69
LSM1-202ENST00000520286 SLC25A40Q8TBP6 338 aa4.49□□□□□ -1.69
LSM1-202ENST00000520286 SCGB1C1Q8TD33 95 aa4.49□□□□□ -1.69
LSM1-202ENST00000520286 SPACA5Q96QH8 159 aa4.49□□□□□ -1.69
LSM1-202ENST00000520286 GNB1LQ9BYB4 327 aa4.49□□□□□ -1.69
LSM1-202ENST00000520286 IL36BQ9NZH7 164 aa4.49□□□□□ -1.69
LSM1-202ENST00000520286 POLR1DQ9Y2S0 133 aa4.49□□□□□ -1.69
LSM1-202ENST00000520286 LY96Q9Y6Y9 160 aa4.49□□□□□ -1.69
LSM1-202ENST00000520286 POLQO75417 2590 aa4.49□□□□□ -1.69
LSM1-202ENST00000520286 NBPF19A0A087WUL8 3843 aa4.48□□□□□ -1.69
LSM1-202ENST00000520286 FREM3P0C091 2139 aa4.48□□□□□ -1.69
LSM1-202ENST00000520286 A0A1B0GV72 72 aa4.48□□□□□ -1.69
LSM1-202ENST00000520286 A0A1W2PQD3 144 aa4.48□□□□□ -1.69
LSM1-202ENST00000520286 ODAMA1E959 279 aa4.48□□□□□ -1.69
LSM1-202ENST00000520286 DPRXA6NFQ7 191 aa4.48□□□□□ -1.69
LSM1-202ENST00000520286 OR2T8A6NH00 312 aa4.48□□□□□ -1.69
LSM1-202ENST00000520286 H0Y980 276 aa4.48□□□□□ -1.69
LSM1-202ENST00000520286 PDE6DO43924 150 aa4.48□□□□□ -1.69
LSM1-202ENST00000520286 OR7C2O60412 319 aa4.48□□□□□ -1.69
LSM1-202ENST00000520286 CA2P00918 260 aa4.48□□□□□ -1.69
LSM1-202ENST00000520286 SERPINA7P05543 415 aa4.48□□□□□ -1.69
LSM1-202ENST00000520286 CBLN1P23435 193 aa4.48□□□□□ -1.69
LSM1-202ENST00000520286 REG1BP48304 166 aa4.48□□□□□ -1.69
LSM1-202ENST00000520286 ZNF83P51522 516 aa4.48□□□□□ -1.69
LSM1-202ENST00000520286 CCL7P80098 99 aa4.48□□□□□ -1.69
LSM1-202ENST00000520286 PSG9Q00887 426 aa4.48□□□□□ -1.69
LSM1-202ENST00000520286 KISS1Q15726 138 aa4.48□□□□□ -1.69
LSM1-202ENST00000520286 HLA-DRB5Q30154 266 aa4.48□□□□□ -1.69
LSM1-202ENST00000520286 DEFB133Q30KQ1 61 aa4.48□□□□□ -1.69
LSM1-202ENST00000520286 Q6ZT83 130 aa4.48□□□□□ -1.69
LSM1-202ENST00000520286 C6orf201Q7Z4U5 140 aa4.48□□□□□ -1.69
LSM1-202ENST00000520286 SLC25A29Q8N8R3 303 aa4.48□□□□□ -1.69
LSM1-202ENST00000520286 SFRP2Q96HF1 295 aa4.48□□□□□ -1.69
LSM1-202ENST00000520286 TXNDC17Q9BRA2 123 aa4.48□□□□□ -1.69
LSM1-202ENST00000520286 ST20Q9HBF5 79 aa4.48□□□□□ -1.69
LSM1-202ENST00000520286 KCNIP2Q9NS61 270 aa4.48□□□□□ -1.69
LSM1-202ENST00000520286 SLC39A9Q9NUM3 307 aa4.48□□□□□ -1.69
LSM1-202ENST00000520286 ICE1Q9Y2F5 2266 aa4.48□□□□□ -1.69
LSM1-202ENST00000520286 ITPR3Q14573 2671 aa4.48□□□□□ -1.69
LSM1-202ENST00000520286 FBN3Q75N90 2809 aa4.47□□□□□ -1.69
LSM1-202ENST00000520286 IGKV1D-43A0A0B4J1Z2 117 aa4.47□□□□□ -1.69
LSM1-202ENST00000520286 MDFIC2A0A1B0GVS7 189 aa4.47□□□□□ -1.69
LSM1-202ENST00000520286 ZNF850A8MQ14 1090 aa4.47□□□□□ -1.69
LSM1-202ENST00000520286 TRAPPC2LH3BP13 241 aa4.47□□□□□ -1.69
LSM1-202ENST00000520286 DHRS3O75911 302 aa4.47□□□□□ -1.69
LSM1-202ENST00000520286 PPYP01298 95 aa4.47□□□□□ -1.69
LSM1-202ENST00000520286 OR10J4P0C629 311 aa4.47□□□□□ -1.69
LSM1-202ENST00000520286 CCL4P13236 92 aa4.47□□□□□ -1.69
LSM1-202ENST00000520286 CMC4P56277 68 aaPredicted RBP4.47□□□□□ -1.69
LSM1-202ENST00000520286 HBG1P69891 147 aa4.47□□□□□ -1.69
LSM1-202ENST00000520286 HBG2P69892 147 aa4.47□□□□□ -1.69
LSM1-202ENST00000520286 TMEM267Q0VDI3 215 aaPredicted RBP4.47□□□□□ -1.69
LSM1-202ENST00000520286 HIST3H3Q16695 136 aa4.47□□□□□ -1.69
LSM1-202ENST00000520286 LCE3EQ5T5B0 92 aa4.47□□□□□ -1.69
LSM1-202ENST00000520286 AMMECR1LQ6DCA0 310 aa4.47□□□□□ -1.69
LSM1-202ENST00000520286 MRPL54Q6P161 138 aaKnown RBP4.47□□□□□ -1.69
LSM1-202ENST00000520286 BAGE3Q86Y29 109 aa4.47□□□□□ -1.69
LSM1-202ENST00000520286 BAGE2Q86Y30 109 aa4.47□□□□□ -1.69
LSM1-202ENST00000520286 OR2M3Q8NG83 312 aa4.47□□□□□ -1.69
LSM1-202ENST00000520286 OR10P1Q8NGE3 313 aa4.47□□□□□ -1.69
LSM1-202ENST00000520286 OR8B3Q8NGG8 313 aa4.47□□□□□ -1.69
LSM1-202ENST00000520286 LMX1AQ8TE12 382 aa4.47□□□□□ -1.69
LSM1-202ENST00000520286 PP6455Q8WZ26 134 aa4.47□□□□□ -1.69
LSM1-202ENST00000520286 OR8B2Q96RD0 313 aa4.47□□□□□ -1.69
LSM1-202ENST00000520286 GPER1Q99527 375 aa4.47□□□□□ -1.69
LSM1-202ENST00000520286 MRPL20Q9BYC9 149 aaKnown RBP4.47□□□□□ -1.69
LSM1-202ENST00000520286 TMEM38BQ9NVV0 291 aa4.47□□□□□ -1.69
LSM1-202ENST00000520286 DYSFO75923 2080 aa4.47□□□□□ -1.69
LSM1-202ENST00000520286 SETD2Q9BYW2 2564 aaPredicted RBP4.47□□□□□ -1.69
LSM1-202ENST00000520286 BOD1L1Q8NFC6 3051 aa4.47□□□□□ -1.69
LSM1-202ENST00000520286 OTOGQ6ZRI0 2925 aa4.46□□□□□ -1.69
LSM1-202ENST00000520286 CACNA1DQ01668 2161 aa4.46□□□□□ -1.7
LSM1-202ENST00000520286 TRBV20OR9-2A0A075B6H5 130 aa4.46□□□□□ -1.7
LSM1-202ENST00000520286 LOC102724200A0A096LPH7 203 aaPredicted RBP4.46□□□□□ -1.7
LSM1-202ENST00000520286 C9JCJ5 164 aa4.46□□□□□ -1.7
LSM1-202ENST00000520286 NAPSAO96009 420 aa4.46□□□□□ -1.7
LSM1-202ENST00000520286 FXYD4P59646 89 aa4.46□□□□□ -1.7
LSM1-202ENST00000520286 CEACAM16Q2WEN9 425 aa4.46□□□□□ -1.7
LSM1-202ENST00000520286 DEFB109BQ30KR1 87 aa4.46□□□□□ -1.7
LSM1-202ENST00000520286 LUZP6Q538Z0 58 aa4.46□□□□□ -1.7
LSM1-202ENST00000520286 TMEM14EPQ6UXP3 125 aa4.46□□□□□ -1.7
LSM1-202ENST00000520286 TMEM136Q6ZRR5 245 aa4.46□□□□□ -1.7
LSM1-202ENST00000520286 ORMDL3Q8N138 153 aa4.46□□□□□ -1.7
LSM1-202ENST00000520286 C5orf17Q8NAS9 161 aa4.46□□□□□ -1.7
LSM1-202ENST00000520286 LSM10Q969L4 123 aaKnown RBP4.46□□□□□ -1.7
LSM1-202ENST00000520286 OR2V2Q96R30 315 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms