RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 LINC00467Q9BRT7 94 aa11.61□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 DAD1P61803 113 aa11.6□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 CYB561D1Q8N8Q1 229 aa11.6□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 SFT2D1Q8WV19 159 aa11.6□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 ATG101Q9BSB4 218 aa11.6□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 NKX6-2Q9C056 277 aaPredicted RBP11.6□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 TIMM8BQ9Y5J9 83 aaPredicted RBP11.6□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 DEFB131BA0A096LNP1 70 aa11.59□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 LCE6AA0A183 80 aa11.59□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 RGS13O14921 159 aa11.59□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 IFNA7P01567 189 aa11.59□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 H2AFB1P0C5Y9 115 aa11.59□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 RAB5CP51148 216 aa11.59□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 EIF4E3Q8N5X7 224 aaKnown RBP11.59□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 SGK494Q96LW2 274 aa11.59□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 NDFIP1Q9BT67 221 aa11.59□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 ARL2-SNX15V9GYD0 113 aa11.59□□□□□ -0.55
MSH5-SAPCD1-206ENST00000491552 A0A1B0GV50 99 aa11.58□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 CBY3A6NI87 242 aa11.58□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 ANXA2RQ3ZCQ2 193 aa11.58□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 Q6AWC8 147 aa11.58□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 Q6ZQT7 251 aa11.58□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 TMEM75Q8N9X5 138 aa11.58□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 ZNF680Q8NEM1 530 aa11.58□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 TVP23CQ96ET8 276 aa11.58□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 TREM1Q9NP99 234 aa11.58□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 NOP10Q9NPE3 64 aaKnown RBP11.58□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 PSG8Q9UQ74 426 aa11.58□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 IGHV1OR15-1A0A075B7D0 117 aa11.57□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 FBLL1A6NHQ2 334 aaKnown RBP11.57□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 SNURFLB1AK76 121 aa11.57□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 IGLL5B9A064 214 aa11.57□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 F6UZH7 168 aa11.57□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 PEX7O00628 323 aa11.57□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 SULT1A2P50226 295 aa11.57□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 FLI1Q01543 452 aaPredicted RBP11.57□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 KMT2CQ8NEZ4 4911 aaKnown RBP11.56□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 PAGE4O60829 102 aa11.56□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 IGLV2-11P01706 119 aa11.56□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 DEFB130BP0DP73 79 aa11.56□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 DEFB130AP0DP74 79 aa11.56□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 PPT1P50897 306 aa11.56□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 CST9LP1Q5W188 147 aa11.56□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 HIST1H2BAQ96A08 127 aa11.56□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 TCEAL7Q9BRU2 100 aa11.56□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 TRAV21A0A0B4J279 112 aa11.55□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 HTN3P15516 51 aa11.55□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 ATP5G3P48201 142 aa11.55□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 TCTAP57738 103 aa11.55□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 MUC21Q5SSG8 566 aa11.55□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 PRNTQ86SH4 94 aa11.55□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 C11orf72Q8NBR9 251 aa11.55□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 LINC00479Q96M42 142 aa11.55□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 GSN-AS1Q9NRJ2 163 aa11.55□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 DYNC2H1Q8NCM8 4307 aaKnown RBP11.55□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 IGHV4-4A0A075B6R2 117 aa11.54□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 TRAV34A0A0B4J273 112 aa11.54□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 NKX2-5P52952 324 aaPredicted RBP11.54□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 DAZ2Q13117 558 aaKnown RBP11.54□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 IBA57Q5T440 356 aaKnown RBP11.54□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 FAM159AQ6UWV7 190 aa11.54□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 C8orf49Q96NF6 230 aa11.54□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 TP53TG3Q9ULZ0 132 aa11.54□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 TEX46H3BTG2 121 aa11.53□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 TCL1AP56279 114 aa11.53□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 SAPCD1Q5SSQ6 148 aa11.53□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 Q86TA4 180 aa11.53□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 LINC00612Q8N6U2 182 aa11.53□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 LINC00476Q8WZB0 136 aa11.53□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 NAGKQ9UJ70 344 aa11.53□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 APLNQ9ULZ1 77 aa11.53□□□□□ -0.56
MSH5-SAPCD1-206ENST00000491552 TRAV1-1A0A0B4J248 108 aa11.52□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 ZNF415Q09FC8 603 aa11.52□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 SMUG1Q53HV7 270 aa11.52□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 FAM210BQ96KR6 192 aa11.52□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 MANBALQ9NQG1 85 aa11.52□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 KLF12Q9Y4X4 402 aa11.52□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 TENM2Q9NT68 2774 aa11.52□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 PLECQ15149 4684 aaKnown RBP11.51□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 TRGV11A0A075B6L2 103 aa11.51□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 GAGE12BA1L429 117 aa11.51□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 GAGE7O76087 117 aa11.51□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 GCGP01275 180 aa11.51□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 ATP5G1P05496 136 aa11.51□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 GAGE12FP0CL80 117 aa11.51□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 GAGE12GP0CL81 117 aa11.51□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 GAGE12IP0CL82 117 aa11.51□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 AKR1C3P42330 323 aa11.51□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 TMEM183BQ1AE95 376 aa11.51□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 TDRG1Q3Y452 100 aa11.51□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 TMEM183AQ8IXX5 376 aa11.51□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 FMC1Q96HJ9 113 aa11.51□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 NDUFAF3Q9BU61 184 aa11.51□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 GNG13Q9P2W3 67 aa11.51□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 LYSTQ99698 3801 aa11.51□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 LY6G6CO95867 125 aa11.5□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 PFN1P07737 140 aaKnown RBP11.5□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 ZNF80P51504 273 aaPredicted RBP11.5□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 UBE2G1P62253 170 aa11.5□□□□□ -0.57
MSH5-SAPCD1-206ENST00000491552 CCL20P78556 96 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms