RNA–Protein interactions for RNA: ENST00000490866.2

SYNE1-229, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 581 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-229ENST00000490866 A0A1W2PPQ1 181 aa5.2□□□□□ -1.58
SYNE1-229ENST00000490866 C7orf77A4D0Y5 90 aa5.2□□□□□ -1.58
SYNE1-229ENST00000490866 F2Z2F3 143 aa5.2□□□□□ -1.58
SYNE1-229ENST00000490866 IGLV2-11P01706 119 aa5.2□□□□□ -1.58
SYNE1-229ENST00000490866 P01737 135 aa5.2□□□□□ -1.58
SYNE1-229ENST00000490866 S100A8P05109 93 aa5.2□□□□□ -1.58
SYNE1-229ENST00000490866 PFN1P07737 140 aaKnown RBP5.2□□□□□ -1.58
SYNE1-229ENST00000490866 CXCL1P09341 107 aa5.2□□□□□ -1.58
SYNE1-229ENST00000490866 MGST1P10620 155 aaKnown RBP5.2□□□□□ -1.58
SYNE1-229ENST00000490866 HLA-DRB4P13762 266 aa5.2□□□□□ -1.58
SYNE1-229ENST00000490866 CDKN1BP46527 198 aa5.2□□□□□ -1.58
SYNE1-229ENST00000490866 ADIRFQ15847 76 aa5.2□□□□□ -1.58
SYNE1-229ENST00000490866 RASL11AQ6T310 242 aa5.2□□□□□ -1.58
SYNE1-229ENST00000490866 ADAMTSL5Q6ZMM2 481 aa5.2□□□□□ -1.58
SYNE1-229ENST00000490866 ISOC2Q96AB3 205 aa5.2□□□□□ -1.58
SYNE1-229ENST00000490866 IGF2BP2-AS1Q96M15 143 aa5.2□□□□□ -1.58
SYNE1-229ENST00000490866 AGPAT4-IT1Q9H0P7 198 aa5.2□□□□□ -1.58
SYNE1-229ENST00000490866 RPS10P5Q9NQ39 176 aa5.2□□□□□ -1.58
SYNE1-229ENST00000490866 HLA-DRB4X5D2U9 266 aa5.2□□□□□ -1.58
SYNE1-229ENST00000490866 IGKV3-7A0A075B6H7 116 aa5.19□□□□□ -1.58
SYNE1-229ENST00000490866 KIR2DL5BA0A0G2JN68 375 aa5.19□□□□□ -1.58
SYNE1-229ENST00000490866 KIR2DL5BA0A0G2JPC4 375 aa5.19□□□□□ -1.58
SYNE1-229ENST00000490866 A8MTW9 85 aa5.19□□□□□ -1.58
SYNE1-229ENST00000490866 H3BTX0 84 aa5.19□□□□□ -1.58
SYNE1-229ENST00000490866 H7BYZ3 331 aa5.19□□□□□ -1.58
SYNE1-229ENST00000490866 M0R3E3 92 aa5.19□□□□□ -1.58
SYNE1-229ENST00000490866 UBE2CO00762 179 aa5.19□□□□□ -1.58
SYNE1-229ENST00000490866 EIF3GO75821 320 aaKnown RBP eCLIP5.19□□□□□ -1.58
SYNE1-229ENST00000490866 ZNF688P0C7X2 276 aa5.19□□□□□ -1.58
SYNE1-229ENST00000490866 FOXA3P55318 350 aaPredicted RBP5.19□□□□□ -1.58
SYNE1-229ENST00000490866 DEFB131AP59861 70 aa5.19□□□□□ -1.58
SYNE1-229ENST00000490866 WDR73Q6P4I2 378 aa5.19□□□□□ -1.58
SYNE1-229ENST00000490866 Q86TA4 180 aa5.19□□□□□ -1.58
SYNE1-229ENST00000490866 APRG1Q8IVJ8 170 aa5.19□□□□□ -1.58
SYNE1-229ENST00000490866 KIR2DL5AQ8N109 375 aa5.19□□□□□ -1.58
SYNE1-229ENST00000490866 RNF182Q8N6D2 247 aa5.19□□□□□ -1.58
SYNE1-229ENST00000490866 KIR2DL5BQ8NHK3 375 aa5.19□□□□□ -1.58
SYNE1-229ENST00000490866 BORCS7Q96B45 105 aa5.19□□□□□ -1.58
SYNE1-229ENST00000490866 NAT8BQ9UHF3 227 aa5.19□□□□□ -1.58
SYNE1-229ENST00000490866 RPH3ALQ9UNE2 315 aa5.19□□□□□ -1.58
SYNE1-229ENST00000490866 KRTAP4-8A0A0G2JLE6 195 aa5.18□□□□□ -1.58
SYNE1-229ENST00000490866 ZNF705GA8MUZ8 300 aaPredicted RBP5.18□□□□□ -1.58
SYNE1-229ENST00000490866 ZNF705FA8MVS1 300 aaPredicted RBP5.18□□□□□ -1.58
SYNE1-229ENST00000490866 KLLNB2CW77 178 aa5.18□□□□□ -1.58
SYNE1-229ENST00000490866 H3BMM0 161 aa5.18□□□□□ -1.58
SYNE1-229ENST00000490866 GATCO43716 136 aaKnown RBP5.18□□□□□ -1.58
SYNE1-229ENST00000490866 ADCYAP1P18509 176 aa5.18□□□□□ -1.58
SYNE1-229ENST00000490866 TFPI2P48307 235 aa5.18□□□□□ -1.58
SYNE1-229ENST00000490866 GNG5P63218 68 aa5.18□□□□□ -1.58
SYNE1-229ENST00000490866 TSKUQ8WUA8 353 aa5.18□□□□□ -1.58
SYNE1-229ENST00000490866 FAM19A4Q96LR4 140 aa5.18□□□□□ -1.58
SYNE1-229ENST00000490866 LINC00479Q96M42 142 aa5.18□□□□□ -1.58
SYNE1-229ENST00000490866 VGLL1Q99990 258 aa5.18□□□□□ -1.58
SYNE1-229ENST00000490866 NDUFAF3Q9BU61 184 aa5.18□□□□□ -1.58
SYNE1-229ENST00000490866 DERL1Q9BUN8 251 aa5.18□□□□□ -1.58
SYNE1-229ENST00000490866 RPP21Q9H633 154 aaKnown RBP5.18□□□□□ -1.58
SYNE1-229ENST00000490866 MAP6D1Q9H9H5 199 aa5.18□□□□□ -1.58
SYNE1-229ENST00000490866 AP5S1Q9NUS5 200 aa5.18□□□□□ -1.58
SYNE1-229ENST00000490866 TRBV20OR9-2A0A075B6H5 130 aa5.17□□□□□ -1.58
SYNE1-229ENST00000490866 TRAV34A0A0B4J273 112 aa5.17□□□□□ -1.58
SYNE1-229ENST00000490866 TMEM189A5PLL7 270 aa5.17□□□□□ -1.58
SYNE1-229ENST00000490866 C19orf71A6NCJ1 209 aa5.17□□□□□ -1.58
SYNE1-229ENST00000490866 SMIM9A6NGZ8 99 aa5.17□□□□□ -1.58
SYNE1-229ENST00000490866 A8MZ25 164 aa5.17□□□□□ -1.58
SYNE1-229ENST00000490866 IGLV2-8P01709 118 aa5.17□□□□□ -1.58
SYNE1-229ENST00000490866 SNRPCP09234 159 aaKnown RBP5.17□□□□□ -1.58
SYNE1-229ENST00000490866 APOC4P55056 127 aa5.17□□□□□ -1.58
SYNE1-229ENST00000490866 EGFEM1PQ0D2K5 195 aa5.17□□□□□ -1.58
SYNE1-229ENST00000490866 TDRG1Q3Y452 100 aa5.17□□□□□ -1.58
SYNE1-229ENST00000490866 RNF212Q495C1 297 aa5.17□□□□□ -1.58
SYNE1-229ENST00000490866 ACTL10Q5JWF8 245 aa5.17□□□□□ -1.58
SYNE1-229ENST00000490866 DNLZQ5SXM8 178 aa5.17□□□□□ -1.58
SYNE1-229ENST00000490866 FAM159AQ6UWV7 190 aa5.17□□□□□ -1.58
SYNE1-229ENST00000490866 ATP5L2Q7Z4Y8 100 aa5.17□□□□□ -1.58
SYNE1-229ENST00000490866 NUDT10Q8NFP7 164 aa5.17□□□□□ -1.58
SYNE1-229ENST00000490866 NUDT11Q96G61 164 aa5.17□□□□□ -1.58
SYNE1-229ENST00000490866 PYGO2Q9BRQ0 406 aa5.17□□□□□ -1.58
SYNE1-229ENST00000490866 LINC00467Q9BRT7 94 aa5.17□□□□□ -1.58
SYNE1-229ENST00000490866 IL36BQ9NZH7 164 aa5.17□□□□□ -1.58
SYNE1-229ENST00000490866 TP53TG3Q9ULZ0 132 aa5.17□□□□□ -1.58
SYNE1-229ENST00000490866 TENM1Q9UKZ4 2725 aa5.17□□□□□ -1.58
SYNE1-229ENST00000490866 FBN1P35555 2871 aaKnown RBP5.16□□□□□ -1.58
SYNE1-229ENST00000490866 TRBV24-1A0A075B6N3 115 aa5.16□□□□□ -1.58
SYNE1-229ENST00000490866 IGKV2-40A0A087WW87 121 aaPredicted RBP5.16□□□□□ -1.58
SYNE1-229ENST00000490866 SMIM27A0A1W2PRY6 76 aa5.16□□□□□ -1.58
SYNE1-229ENST00000490866 C7orf71A4D174 169 aa5.16□□□□□ -1.58
SYNE1-229ENST00000490866 CIDEAO60543 219 aa5.16□□□□□ -1.58
SYNE1-229ENST00000490866 IGKV2D-40P01614 121 aaPredicted RBP5.16□□□□□ -1.58
SYNE1-229ENST00000490866 ORM1P02763 201 aa5.16□□□□□ -1.58
SYNE1-229ENST00000490866 LINC00310P59036 64 aa5.16□□□□□ -1.58
SYNE1-229ENST00000490866 CACNG7P62955 275 aa5.16□□□□□ -1.58
SYNE1-229ENST00000490866 PIK3CD-AS1Q5SR53 167 aa5.16□□□□□ -1.58
SYNE1-229ENST00000490866 IGFL4Q6B9Z1 124 aa5.16□□□□□ -1.58
SYNE1-229ENST00000490866 ZNF493Q6ZR52 646 aa5.16□□□□□ -1.58
SYNE1-229ENST00000490866 SMIM15Q7Z3B0 74 aa5.16□□□□□ -1.58
SYNE1-229ENST00000490866 FRZBQ92765 325 aa5.16□□□□□ -1.58
SYNE1-229ENST00000490866 C20orf173Q96LM9 149 aa5.16□□□□□ -1.58
SYNE1-229ENST00000490866 CSTL1Q9H114 145 aa5.16□□□□□ -1.58
SYNE1-229ENST00000490866 TRGV11A0A075B6L2 103 aa5.15□□□□□ -1.59
SYNE1-229ENST00000490866 LOC102724200A0A096LPH7 203 aaPredicted RBP5.15□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms