RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 IGHV1OR15-1A0A075B7D0 117 aa9.74□□□□□ -0.85
SYNE1-226ENST00000488376 F6UZH7 168 aa9.74□□□□□ -0.85
SYNE1-226ENST00000488376 RGS13O14921 159 aa9.74□□□□□ -0.85
SYNE1-226ENST00000488376 MBP02144 154 aa9.74□□□□□ -0.85
SYNE1-226ENST00000488376 P0DMU3 169 aa9.74□□□□□ -0.85
SYNE1-226ENST00000488376 FAM231AP0DMU4 169 aa9.74□□□□□ -0.85
SYNE1-226ENST00000488376 FAM231CP0DMU5 169 aa9.74□□□□□ -0.85
SYNE1-226ENST00000488376 DAZ2Q13117 558 aaKnown RBP9.74□□□□□ -0.85
SYNE1-226ENST00000488376 ANXA2RQ3ZCQ2 193 aa9.74□□□□□ -0.85
SYNE1-226ENST00000488376 ACTR3CQ9C0K3 210 aaPredicted RBP9.74□□□□□ -0.85
SYNE1-226ENST00000488376 TRBV7-9A0A0J9YWB2 115 aa9.73□□□□□ -0.85
SYNE1-226ENST00000488376 CXorf1O96002 111 aa9.73□□□□□ -0.85
SYNE1-226ENST00000488376 FGF8P55075 233 aaPredicted RBP9.73□□□□□ -0.85
SYNE1-226ENST00000488376 TCL1AP56279 114 aa9.73□□□□□ -0.85
SYNE1-226ENST00000488376 IQCF2Q8IXL9 164 aa9.73□□□□□ -0.85
SYNE1-226ENST00000488376 TRGV1A0A0A0MS02 117 aa9.72□□□□□ -0.85
SYNE1-226ENST00000488376 M0R2N4 97 aa9.72□□□□□ -0.85
SYNE1-226ENST00000488376 NUDT3O95989 172 aa9.72□□□□□ -0.85
SYNE1-226ENST00000488376 FHITP49789 147 aa9.72□□□□□ -0.85
SYNE1-226ENST00000488376 SUMO1P63165 101 aaKnown RBP9.72□□□□□ -0.85
SYNE1-226ENST00000488376 FAM74A1Q5RGS3 127 aa9.72□□□□□ -0.85
SYNE1-226ENST00000488376 Q6AWC8 147 aa9.72□□□□□ -0.85
SYNE1-226ENST00000488376 KCNRGQ8N5I3 272 aa9.72□□□□□ -0.85
SYNE1-226ENST00000488376 ZNF680Q8NEM1 530 aa9.72□□□□□ -0.85
SYNE1-226ENST00000488376 ST6GAL2Q96JF0 529 aa9.72□□□□□ -0.85
SYNE1-226ENST00000488376 MRPL16Q9NX20 251 aaKnown RBP9.72□□□□□ -0.85
SYNE1-226ENST00000488376 MDFICQ9P1T7 246 aa9.72□□□□□ -0.85
SYNE1-226ENST00000488376 IGLV2-18A0A075B6J9 118 aa9.71□□□□□ -0.86
SYNE1-226ENST00000488376 TRAV26-1A0A087WT03 109 aa9.71□□□□□ -0.86
SYNE1-226ENST00000488376 A0A0J9YY99 117 aa9.71□□□□□ -0.86
SYNE1-226ENST00000488376 CTXND1A0A1B0GTU2 59 aa9.71□□□□□ -0.86
SYNE1-226ENST00000488376 TAAR5O14804 337 aa9.71□□□□□ -0.86
SYNE1-226ENST00000488376 SPINK4O60575 86 aa9.71□□□□□ -0.86
SYNE1-226ENST00000488376 IGLV2-11P01706 119 aa9.71□□□□□ -0.86
SYNE1-226ENST00000488376 TCRAP04437 139 aa9.71□□□□□ -0.86
SYNE1-226ENST00000488376 UBE2G2P60604 165 aa9.71□□□□□ -0.86
SYNE1-226ENST00000488376 OR5I1Q13606 314 aa9.71□□□□□ -0.86
SYNE1-226ENST00000488376 UBE2DNLQ8IWF7 75 aa9.71□□□□□ -0.86
SYNE1-226ENST00000488376 C5orf17Q8NAS9 161 aa9.71□□□□□ -0.86
SYNE1-226ENST00000488376 TMED6Q8WW62 240 aa9.71□□□□□ -0.86
SYNE1-226ENST00000488376 C8orf49Q96NF6 230 aa9.71□□□□□ -0.86
SYNE1-226ENST00000488376 ARPC5LQ9BPX5 153 aa9.71□□□□□ -0.86
SYNE1-226ENST00000488376 LENEPQ9Y5L5 61 aa9.71□□□□□ -0.86
SYNE1-226ENST00000488376 ZNF80P51504 273 aaPredicted RBP9.7□□□□□ -0.86
SYNE1-226ENST00000488376 ZNF345Q14585 488 aa9.7□□□□□ -0.86
SYNE1-226ENST00000488376 TMEM183BQ1AE95 376 aa9.7□□□□□ -0.86
SYNE1-226ENST00000488376 AKR1C8PQ5T2L2 129 aa9.7□□□□□ -0.86
SYNE1-226ENST00000488376 IBA57Q5T440 356 aaKnown RBP9.7□□□□□ -0.86
SYNE1-226ENST00000488376 TMEM183AQ8IXX5 376 aa9.7□□□□□ -0.86
SYNE1-226ENST00000488376 ARL6IP6Q8N6S5 226 aa9.7□□□□□ -0.86
SYNE1-226ENST00000488376 C15orf53Q8NAA6 179 aa9.7□□□□□ -0.86
SYNE1-226ENST00000488376 LINC00479Q96M42 142 aa9.7□□□□□ -0.86
SYNE1-226ENST00000488376 TREM1Q9NP99 234 aa9.7□□□□□ -0.86
SYNE1-226ENST00000488376 TMEM167BQ9NRX6 74 aa9.7□□□□□ -0.86
SYNE1-226ENST00000488376 NAGKQ9UJ70 344 aa9.7□□□□□ -0.86
SYNE1-226ENST00000488376 EPDR1Q9UM22 224 aa9.7□□□□□ -0.86
SYNE1-226ENST00000488376 TRGV2A0A075B6R0 118 aa9.69□□□□□ -0.86
SYNE1-226ENST00000488376 TRAV34A0A0B4J273 112 aa9.69□□□□□ -0.86
SYNE1-226ENST00000488376 HMSDA8MTL9 139 aa9.69□□□□□ -0.86
SYNE1-226ENST00000488376 GNRH2O43555 120 aa9.69□□□□□ -0.86
SYNE1-226ENST00000488376 IGHV3-53P01767 116 aa9.69□□□□□ -0.86
SYNE1-226ENST00000488376 FRAS1Q86XX4 4008 aa9.69□□□□□ -0.86
SYNE1-226ENST00000488376 C11orf21Q9P2W6 132 aa9.69□□□□□ -0.86
SYNE1-226ENST00000488376 MAP1LC3B2A6NCE7 125 aa9.68□□□□□ -0.86
SYNE1-226ENST00000488376 BCL2L11O43521 198 aa9.68□□□□□ -0.86
SYNE1-226ENST00000488376 ZNF415Q09FC8 603 aa9.68□□□□□ -0.86
SYNE1-226ENST00000488376 VSIG2Q96IQ7 327 aa9.68□□□□□ -0.86
SYNE1-226ENST00000488376 MAP1LC3BQ9GZQ8 125 aa9.68□□□□□ -0.86
SYNE1-226ENST00000488376 PSG8Q9UQ74 426 aa9.68□□□□□ -0.86
SYNE1-226ENST00000488376 DNAH6Q9C0G6 4158 aa9.67□□□□□ -0.86
SYNE1-226ENST00000488376 A0A1W2PRE2 83 aa9.67□□□□□ -0.86
SYNE1-226ENST00000488376 FAM74A7A6NL05 159 aa9.67□□□□□ -0.86
SYNE1-226ENST00000488376 RNF212Q495C1 297 aa9.67□□□□□ -0.86
SYNE1-226ENST00000488376 FAM159AQ6UWV7 190 aa9.67□□□□□ -0.86
SYNE1-226ENST00000488376 PRNTQ86SH4 94 aa9.67□□□□□ -0.86
SYNE1-226ENST00000488376 TMEM75Q8N9X5 138 aa9.67□□□□□ -0.86
SYNE1-226ENST00000488376 C18orf15Q96N68 181 aa9.67□□□□□ -0.86
SYNE1-226ENST00000488376 ZNF471Q9BX82 626 aaPredicted RBP9.67□□□□□ -0.86
SYNE1-226ENST00000488376 LINC00588Q9Y4M8 146 aa9.67□□□□□ -0.86
SYNE1-226ENST00000488376 IGHV3-16A0A0C4DH30 117 aa9.66□□□□□ -0.86
SYNE1-226ENST00000488376 TYMSP04818 313 aa9.66□□□□□ -0.86
SYNE1-226ENST00000488376 FLI1Q01543 452 aaPredicted RBP9.66□□□□□ -0.86
SYNE1-226ENST00000488376 TDRG1Q3Y452 100 aa9.66□□□□□ -0.86
SYNE1-226ENST00000488376 Q6ZR54 194 aa9.66□□□□□ -0.86
SYNE1-226ENST00000488376 TMUB2Q71RG4 321 aa9.66□□□□□ -0.86
SYNE1-226ENST00000488376 CYB561D1Q8N8Q1 229 aa9.66□□□□□ -0.86
SYNE1-226ENST00000488376 ATG101Q9BSB4 218 aa9.66□□□□□ -0.86
SYNE1-226ENST00000488376 TRAV21A0A0B4J279 112 aa9.65□□□□□ -0.86
SYNE1-226ENST00000488376 A0A0D9SG52 128 aa9.65□□□□□ -0.86
SYNE1-226ENST00000488376 A0A1B0GV50 99 aa9.65□□□□□ -0.86
SYNE1-226ENST00000488376 SERTM2A0A1B0GWG4 89 aa9.65□□□□□ -0.86
SYNE1-226ENST00000488376 RTL8CO15255 209 aa9.65□□□□□ -0.86
SYNE1-226ENST00000488376 SFTA3P0C7M3 94 aa9.65□□□□□ -0.86
SYNE1-226ENST00000488376 Q6ZNX1 250 aa9.65□□□□□ -0.86
SYNE1-226ENST00000488376 ZNRF2Q8NHG8 242 aa9.65□□□□□ -0.86
SYNE1-226ENST00000488376 FAM213BQ8TBF2 198 aa9.65□□□□□ -0.86
SYNE1-226ENST00000488376 NACAE9PAV3 2078 aa9.64□□□□□ -0.87
SYNE1-226ENST00000488376 TRGV11A0A075B6L2 103 aa9.64□□□□□ -0.87
SYNE1-226ENST00000488376 KANTRA0A1W2PQU2 76 aa9.64□□□□□ -0.87
SYNE1-226ENST00000488376 PEX7O00628 323 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms